Rv2477c - c.1590C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
30 Sensitive
2 RR-TB
43 HR-TB
3 MDR-TB
1 Pre-XDR-TB
2 XDR-TB
32 Other
lineage Counts
| lineage | Count |
|---|---|
| M.canetti;lineage2.2 | 2 |
| lineage4.9 | 68 |
| lineage4.3.4 | 1 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| lineage2.1;lineage4.9 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
| lineage4.6.2.2 | 2 |
| La1.7.1;lineage4.9 | 1 |
| lineage4.3.4.2.1 | 3 |
| M.canetti;lineage4.9 | 2 |
| La1;lineage4.9 | 1 |
| lineage2.2.1 | 4 |
| lineage4.3.4.1 | 3 |
| La1.7;lineage4.2 | 1 |
| lineage4.9;lineage6.3 | 1 |
| lineage4.9;lineage7 | 4 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| lineage2.2 | 1 |
| lineage4.9;lineage9 | 1 |
| lineage4 | 2 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| La1.7;M.canetti;lineage4.9 | 2 |
| lineage4.9;lineage6.1.3 | 1 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage4.4.1.2 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 113 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | ERR736875 | HR-TB | lineage4.9 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | SRR7535082 | Sensitive | lineage4.9 | None | SRR6045010 | Sensitive | lineage4.9 | None | ERR137286 | Other | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | SRR3675270 | Other | lineage4.9 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR502511 | Sensitive | lineage4.9 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | ERR181887 | Other | lineage4.9 | None | ERR502510 | Sensitive | lineage4.9 | None | SRR6045347 | Other | lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | SRR6045219 | HR-TB | lineage4.9 | None | SRR5341461 | HR-TB | lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR4815441 | HR-TB | lineage4.9 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR926163 | Other | lineage4.9 | None | ERR11465509 | Sensitive | lineage4.3.4.2.1 | None | ERR751326 | Other | lineage4.9 | None | SRR6045399 | Other | M.canetti;lineage4.9 | None | ERR926159 | Sensitive | lineage4.9 | None | ERR4819877 | HR-TB | lineage4.9 | None | ERR4816466 | HR-TB | lineage4.9 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | SRR6046382 | Sensitive | lineage2.2.1 | None | ERR926164 | Other | lineage4.9 | None | ERR1063849 | HR-TB | lineage4.9 | None | SRR6046594 | Sensitive | lineage4.9 | None | ERR4816656 | Other | lineage4.9 | None | ERR11465353 | Sensitive | lineage4.3.4.1 | None | SRR5341467 | Other | lineage4.9 | None | ERR212125 | HR-TB | lineage4.9 | None | SRR23961559 | Other | La1.7;lineage4.2 | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | SRR6046485 | Other | lineage4.9 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | ERR4819422 | HR-TB | lineage4.9 | None | ERR926165 | Sensitive | lineage4.9 | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR176651 | Other | lineage4.9 | None | ERR4818929 | HR-TB | lineage4.9 | None | ERR387051 | Other | lineage4.9 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | SRR1183049 | RR-TB | lineage2.2 | None | ERR4820773 | HR-TB | lineage4.9 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | ERR11466070 | Sensitive | lineage4.3.4.1 | None | SRR6045526 | Other | lineage4.9 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | ERR212138 | HR-TB | lineage4.9 | None | ERR4816478 | HR-TB | lineage4 | None | ERR1035122 | Sensitive | lineage4.9 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | ERR473332 | Other | lineage4.9 | None | SRR5341308 | Sensitive | lineage4.9 | None | SRR3675456 | RR-TB | lineage4.9;lineage7 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR181824 | HR-TB | lineage4.9 | None | ERR176778 | HR-TB | lineage4.9 | None | SRR6045555 | Other | lineage4.9 | None | SRR6045795 | Sensitive | lineage2.2.1 | None | ERR323062 | Sensitive | lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR4819241 | Other | lineage4.9 | None | ERR926157 | Sensitive | lineage4.9 | None | SRR1180137 | Other | lineage2.2.1 | None | SRR6045053 | Other | lineage4 | None | ERR702405 | Sensitive | lineage4.9 | None | ERR736848 | Other | lineage4.9 | None | SRR5341300 | HR-TB | lineage4.9 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | ERR323115 | Sensitive | lineage4.9 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | SRR6046133 | HR-TB | lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | ERR124636 | Sensitive | lineage4.9 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR176779 | HR-TB | lineage4.9 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | ERR4817731 | HR-TB | lineage4.9 | None | ERR971389 | Sensitive | lineage4.9 | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | SRR26159066 | Sensitive | lineage4.9 | None | ERR1034634 | HR-TB | lineage4.9 | None | ERR323085 | Sensitive | lineage4.9 | None | ERR11465511 | Other | lineage4.3.4.2.1 | None | ERR736834 | Sensitive | lineage4.9 | None | ERR5311094 | HR-TB | lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None |
|---|
