Rv1908c - c.444G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
16 Sensitive
0 RR-TB
72 HR-TB
6 MDR-TB
17 Pre-XDR-TB
0 XDR-TB
8 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 36 |
| lineage2.2.2;lineage4 | 6 |
| lineage2.2.2 | 15 |
| lineage2.2.1 | 27 |
| lineage4.5 | 3 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| lineage2.2.1.1 | 3 |
| lineage2.2;lineage4 | 2 |
| lineage2 | 1 |
| lineage2.2.1;lineage2.2.2 | 5 |
| lineage3 | 3 |
| lineage4.4.2 | 3 |
| lineage2.2.1;lineage4 | 1 |
| lineage2.2.1.1;lineage4 | 1 |
| lineage2;lineage4.9 | 2 |
| lineage4.9;lineage7 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage3.1 | 1 |
| 1 | |
| lineage4 | 1 |
| lineage2.2.2;lineage4.9 | 2 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| lineage2.2;lineage4.9 | 2 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 119 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR212125 | HR-TB | lineage4.9 | None | SRR1049006 | HR-TB | lineage2.2.2;lineage4 | None | SAMN02360583 | HR-TB | lineage2.2.2 | None | SRR1048966 | MDR-TB | lineage2.2.1 | None | SRR1013621 | Pre-XDR-TB | lineage2.2.2 | None | SRR1048996 | Sensitive | lineage4.5 | None | SRR1013604 | HR-TB | lineage2.2.1 | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | ERR323062 | Sensitive | lineage4.9 | None | SRR1048997 | HR-TB | lineage2.2.1 | None | SRR1144744 | HR-TB | lineage2.2.1 | None | ERR323066 | Sensitive | lineage4.9 | None | SRR1013602 | HR-TB | lineage2.2.1 | None | SRR1013577 | HR-TB | lineage2.2.2 | None | SRR1048994 | HR-TB | lineage4.9 | None | ERR736856 | Sensitive | lineage4.9 | None | SRR1048995 | HR-TB | lineage4.5 | None | SRR1048983 | HR-TB | lineage2.2.1.1 | None | SRR1047996 | MDR-TB | lineage2.2.2 | None | SRR1048868 | Pre-XDR-TB | lineage2.2.2 | None | SRR1048885 | HR-TB | lineage2.2;lineage4 | None | SRR1049040 | HR-TB | lineage2 | None | SRR1013607 | HR-TB | lineage2.2.2 | None | SAMN02360574 | HR-TB | lineage2.2.1 | None | SAMN02360581 | HR-TB | lineage2.2.1 | None | SAMN02360564 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02360571 | HR-TB | lineage2.2.1;lineage2.2.2 | None | SAMN02360586 | HR-TB | lineage2.2.1 | None | SAMN02360580 | HR-TB | lineage2.2.1 | None | SAMN02360577 | HR-TB | lineage3 | None | SAMN02360562 | Pre-XDR-TB | lineage4.4.2 | None | SRR1013584 | HR-TB | lineage2.2.2 | None | SAMN02360591 | Pre-XDR-TB | lineage2.2.2 | None | SAMN02360563 | Pre-XDR-TB | lineage2.2.2 | None | SRR1013554 | MDR-TB | lineage2.2.2;lineage4 | None | ERR176779 | HR-TB | lineage4.9 | None | SRR1049041 | HR-TB | lineage2.2.1;lineage4 | None | SRR1048986 | HR-TB | lineage2.2.1 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | ERR1035122 | Sensitive | lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | SRR1048974 | HR-TB | lineage2.2.1 | None | SRR1048968 | HR-TB | lineage2.2.1;lineage2.2.2 | None | ERR323085 | Sensitive | lineage4.9 | None | SRR1013599 | HR-TB | lineage2.2.1.1;lineage4 | None | SRR1048992 | HR-TB | lineage2.2;lineage4 | None | ERR176778 | HR-TB | lineage4.9 | None | SRR1048886 | HR-TB | lineage2.2.2;lineage4 | None | SRR1049007 | HR-TB | lineage2.2.2 | None | SRR1048965 | HR-TB | lineage2.2.1 | None | SRR1013589 | HR-TB | lineage2.2.1 | None | SRR1048991 | HR-TB | lineage2;lineage4.9 | None | SRR1013622 | Pre-XDR-TB | lineage2.2.2 | None | SRR1013598 | Sensitive | lineage2.2.2;lineage4 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | SRR1048865 | Pre-XDR-TB | lineage4.4.2 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR4797184 | Sensitive | lineage4.9 | None | ERR124636 | Sensitive | lineage4.9 | None | SAMN02360595 | Pre-XDR-TB | lineage2.2.2 | None | SRR1013570 | Pre-XDR-TB | lineage2.2.1 | None | SRR1013569 | Pre-XDR-TB | lineage2.2.1 | None | SRR6511621 | Sensitive | lineage4.9 | None | SAMN02398710 | MDR-TB | lineage2.2.2 | None | SRR1013578 | HR-TB | lineage2.2.2;lineage4 | None | SRR1048975 | HR-TB | lineage2.2.1 | None | ERR6866639 | Other | lineage4.9 | None | SRR28351442 | HR-TB | lineage3.1 | None | SRR1144759 | HR-TB | lineage2.2.2;lineage4 | None | ERR736834 | Sensitive | lineage4.9 | None | ERR4797264 | Sensitive | lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | SRR5341469 | HR-TB | lineage4.9 | None | SRR1049023 | HR-TB | lineage4.9 | None | ERR2514692 | Other | None | SRR28351339 | MDR-TB | lineage4 | None | SRR1048981 | HR-TB | lineage3 | None | SRR1048969 | HR-TB | lineage2.2.1;lineage2.2.2 | None | SRR1048987 | HR-TB | lineage2.2.1 | None | SRR1049022 | HR-TB | lineage2.2.2;lineage4.9 | None | SRR1144809 | HR-TB | lineage2.2.1 | None | SRR1048980 | HR-TB | lineage3 | None | SRR1048867 | Pre-XDR-TB | lineage2.2.2 | None | ERR736872 | HR-TB | lineage4.9 | None | SRR1013590 | HR-TB | lineage2.2.1 | None | ERR502511 | Sensitive | lineage4.9 | None | SRR1048993 | HR-TB | lineage4.9 | None | SRR1159378 | Other | lineage4.9 | None | ERR702405 | Sensitive | lineage4.9 | None | SRR5341300 | HR-TB | lineage4.9 | None | SRR6045526 | Other | lineage4.9 | None | ERR502510 | Sensitive | lineage4.9 | None | SRR1048866 | Pre-XDR-TB | lineage4.4.2 | None | ERR3797015 | HR-TB | lineage4.9 | None | SRR14801749 | HR-TB | lineage4.9 | None | SRR1048869 | HR-TB | lineage2.2.1;lineage2.2.2 | None | SRR1048982 | HR-TB | lineage2.2.1.1 | None | SRR5341461 | HR-TB | lineage4.9 | None | SAMN02360556 | Pre-XDR-TB | lineage2.2.2 | None | SAMN02360579 | HR-TB | lineage2.2.1.1 | None | SAMN02360570 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02360585 | HR-TB | lineage4.5 | None | SRR1048998 | HR-TB | lineage2.2.1 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | ERR751326 | Other | lineage4.9 | None | SRR1048870 | HR-TB | lineage2.2.1;lineage2.2.2 | None | SRR1013603 | HR-TB | lineage2.2.1 | None | SRR1048852 | HR-TB | lineage2.2;lineage4.9 | None | SRR5341453 | Other | lineage4.9 | None | SRR1048988 | HR-TB | lineage2.2.1 | None | SRR1049027 | HR-TB | lineage2.2.2;lineage4.9 | None | SRR1047993 | HR-TB | lineage2.2.1 | None | SRR1049026 | HR-TB | lineage2.2;lineage4.9 | None | SRR5341308 | Sensitive | lineage4.9 | None | SRR1048853 | HR-TB | lineage2;lineage4.9 | None | SRR5341467 | Other | lineage4.9 | None |
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