Rv0668 - c.600C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
65 Sensitive
3 RR-TB
19 HR-TB
5 MDR-TB
4 Pre-XDR-TB
0 XDR-TB
51 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 78 |
| lineage1;lineage4.9 | 1 |
| La1.8.1 | 2 |
| lineage4.1;lineage4.9 | 2 |
| lineage4.5 | 1 |
| La3;lineage2.1;lineage4.9 | 1 |
| La3;lineage4 | 1 |
| 3 | |
| lineage4.3.3 | 1 |
| lineage2.2.1 | 12 |
| lineage2.2.1;lineage4 | 1 |
| La3;lineage4.9 | 11 |
| lineage4.3.4.2.1 | 2 |
| lineage4.4.1.2 | 1 |
| lineage4 | 2 |
| lineage3 | 1 |
| lineage4.3.2.1 | 1 |
| lineage2.2 | 1 |
| lineage2.2.1.1 | 5 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| La1;lineage4.9 | 1 |
| lineage4.2;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.1.2.1 | 2 |
| lineage4.4.1.1 | 1 |
| lineage1.1.2 | 2 |
| La1.2 | 1 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| lineage4.3 | 1 |
| La1.7.1;lineage4.9 | 1 |
| lineage4.8 | 1 |
| lineage4.1.2 | 1 |
| La1.7;lineage4.9 | 1 |
| lineage1.1.1;lineage4 | 1 |
| lineage4.8;lineage4.9 | 2 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 147 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4796254 | Sensitive | lineage4.9 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | SRR7236177 | Other | La1.8.1 | None | ERR323066 | Sensitive | lineage4.9 | None | ERR4811030 | Sensitive | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | ERR4798431 | Sensitive | lineage4.1;lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | ERR3283028 | Other | La3;lineage4 | None | ERR1063896 | Sensitive | None | SRR12708409 | HR-TB | lineage4.3.3 | None | SRR3675522 | Other | lineage4.9 | None | SRR3675580 | Sensitive | lineage4.9 | None | ERR502511 | Sensitive | lineage4.9 | None | ERR400320 | Sensitive | lineage4.9 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | SRR5341455 | Sensitive | lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR363506 | Sensitive | lineage4.9 | None | SRR3675473 | Sensitive | lineage4.9 | None | ERR4798099 | Other | lineage4.9 | None | SRR5341425 | Other | lineage4.9 | None | SRR1169249 | Other | lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR3283031 | Sensitive | La3;lineage4.9 | None | SRR12708374 | Sensitive | lineage4.1;lineage4.9 | None | SRR3675235 | Sensitive | lineage4.9 | None | ERR212123 | Other | lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | SRR11662694 | Other | lineage4.9 | None | SRR29050770 | Sensitive | lineage4.9 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | ERR124636 | Sensitive | lineage4.9 | None | ERR161037 | Other | lineage4.9 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR3283011 | Other | La3;lineage4.9 | None | SRR5341461 | HR-TB | lineage4.9 | None | SRR6511621 | Sensitive | lineage4.9 | None | ERR400336 | Sensitive | lineage4.9 | None | ERR3273109 | HR-TB | lineage4 | None | ERR751326 | Other | lineage4.9 | None | SRR6046564 | Sensitive | lineage4.9 | None | SRR12708372 | Sensitive | lineage4.9 | None | ERR212138 | HR-TB | lineage4.9 | None | ERR4799378 | Sensitive | lineage4.9 | None | ERR1035122 | Sensitive | lineage4.9 | None | ERR4812155 | Other | lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR176643 | Other | La3;lineage4.9 | None | ERR6866639 | Other | lineage4.9 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | SRR3675229 | Sensitive | lineage4.9 | None | SRR29097066 | Sensitive | lineage4.9 | None | ERR363502 | Other | lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR1034634 | HR-TB | lineage4.9 | None | SRR6044819 | Sensitive | lineage4.9 | None | ERR373947 | Other | lineage4.9 | None | SRR5341467 | Other | lineage4.9 | None | ERR4799513 | HR-TB | lineage2.2 | None | SRR1184024 | RR-TB | lineage2.2.1.1 | None | ERR323085 | Sensitive | lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR3675585 | Sensitive | lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | SRR11662690 | HR-TB | lineage4.9 | None | SRR5341469 | HR-TB | lineage4.9 | None | SRR1180996 | Sensitive | lineage4.9 | None | ERR11252612 | Other | La3;lineage4.9 | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | ERR2517475 | Other | lineage4 | None | ERR4769497 | Other | La1;lineage4.9 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | SRR3675510 | Sensitive | La3;lineage4.9 | None | ERR323062 | Sensitive | lineage4.9 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | ERR137286 | Other | lineage4.9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR12708384 | Sensitive | lineage4.9 | None | SRR1791747 | Other | La1.8.1 | None | ERR3797048 | Other | La3;lineage4.9 | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | ERR702405 | Sensitive | lineage4.9 | None | SRR6045548 | Sensitive | lineage4.9 | None | SRR3675455 | Sensitive | lineage4.9 | None | SRR5341300 | HR-TB | lineage4.9 | None | SRR3675279 | Sensitive | lineage4.9 | None | SRR5341345 | Sensitive | lineage4.9 | None | SRR6045526 | Other | lineage4.9 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | ERR502510 | Sensitive | lineage4.9 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | SRR5341366 | Sensitive | lineage4.9 | None | ERR4798139 | Sensitive | lineage1.1.2 | None | ERR4797184 | Sensitive | lineage4.9 | None | ERR6198317 | Other | La1.2 | None | ERR400326 | Other | lineage4.9 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR6046245 | Other | lineage4.9 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | SRR5341323 | Sensitive | lineage4.9 | None | ERR9786656 | Sensitive | lineage4.1.2.1 | None | SRR12416840 | MDR-TB | lineage4.9 | None | ERR867542 | HR-TB | lineage4.3 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR349298 | Sensitive | lineage4.9 | None | SRR5341303 | Sensitive | lineage4.9 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675387 | Other | lineage4.9 | None | SRR5341453 | Other | lineage4.9 | None | ERR3797064 | Other | La3;lineage4.9 | None | SRR1181091 | Other | lineage2.2.1.1 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675247 | Other | lineage4.9 | None | SRR5341310 | Other | lineage1.1.2 | None | SRR3675246 | Other | lineage4.9 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR5341308 | Sensitive | lineage4.9 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | SRR29096246 | Sensitive | La1.7;lineage4.9 | None | ERR736834 | Sensitive | lineage4.9 | None | ERR373946 | Sensitive | lineage4.9 | None | SRR5341298 | Sensitive | lineage4.9 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR12708416 | Sensitive | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | ERR4024991 | Other | lineage4.8;lineage4.9 | None | ERR4797264 | Sensitive | lineage4.9 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | ERR2514692 | Other | None | SRR5341387 | Other | lineage4.9 | None | ERR212033 | Other | lineage4.9 | None | ERR4797474 | Sensitive | lineage4.9 | None | ERR6866022 | Other | lineage4.8;lineage4.9 | None |
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