Rv3245c - c.-386G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
39 Sensitive
3 RR-TB
33 HR-TB
12 MDR-TB
4 Pre-XDR-TB
0 XDR-TB
44 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 74 |
| lineage2.2.1 | 11 |
| lineage4.3.2.1 | 1 |
| lineage1.1.3.1 | 1 |
| lineage2.2.1.2 | 2 |
| La1.7;lineage4.9 | 5 |
| 3 | |
| La1.7;M.canetti;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| La2;lineage2.2 | 1 |
| lineage4.8 | 3 |
| lineage4.1.2.1 | 2 |
| lineage4.3.4.2 | 1 |
| La1.7.1 | 1 |
| lineage1.1.1 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| lineage2.2.1;lineage4.1.2.1 | 1 |
| lineage2.2 | 1 |
| lineage2.2.1.1 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| lineage4 | 4 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage4.6.2.2 | 2 |
| lineage1.1.2 | 3 |
| lineage4.9;lineage9 | 1 |
| M.canetti;lineage4.9 | 1 |
| lineage4.1.2 | 1 |
| lineage4.9;lineage7 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| La1.8.1 | 1 |
| lineage4.8.1 | 1 |
| La2;lineage4.9 | 1 |
| lineage2.1;lineage4.9 | 1 |
| lineage3 | 1 |
| lineage4.9;lineage6.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 135 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR12416842 | HR-TB | lineage4.9 | None | SRR20969731 | Other | lineage2.2.1 | None | ERR6866639 | Other | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR4816656 | Other | lineage4.9 | None | SRR5341308 | Sensitive | lineage4.9 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | ERR779852 | Sensitive | lineage4.9 | None | ERR6359082 | Other | lineage4.9 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | ERR212001 | HR-TB | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | SRR6046878 | Other | lineage4.9 | None | ERR2693252 | Sensitive | lineage4.9 | None | SRR6045010 | Sensitive | lineage4.9 | None | ERR3283042 | Other | lineage4.9 | None | ERR4819241 | Other | lineage4.9 | None | ERR4818929 | HR-TB | lineage4.9 | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | SRR1175127 | Other | lineage2.2.1.2 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | SRR5535933 | Other | lineage4.9 | None | ERR9119669 | HR-TB | lineage4.9 | None | SRR6046046 | Other | lineage4.9 | None | ERR4820773 | HR-TB | lineage4.9 | None | ERR6358979 | Other | lineage4.9 | None | SRR3675492 | Other | La1.7;lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR6045548 | Sensitive | lineage4.9 | None | ERR4799025 | Other | lineage4.8 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | ERR736856 | Sensitive | lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | ERR4769521 | RR-TB | lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | SRR6045347 | Other | lineage4.9 | None | SRR11662694 | Other | lineage4.9 | None | ERR4769450 | Other | lineage4.9 | None | ERR4797184 | Sensitive | lineage4.9 | None | ERR124636 | Sensitive | lineage4.9 | None | ERR6358991 | HR-TB | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | ERR9786346 | Sensitive | lineage4.3.4.2 | None | SRR6511621 | Sensitive | lineage4.9 | None | ERR4815441 | HR-TB | lineage4.9 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | ERR1035122 | Sensitive | lineage4.9 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR9971112 | Other | lineage2.2.1 | None | ERR1034634 | HR-TB | lineage4.9 | None | ERR11488822 | Pre-XDR-TB | lineage2.2.1;lineage4.1.2.1 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR323085 | Sensitive | lineage4.9 | None | ERR736834 | Sensitive | lineage4.9 | None | SRR3675585 | Sensitive | lineage4.9 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | ERR4797264 | Sensitive | lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | SRR5341469 | HR-TB | lineage4.9 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | ERR11252558 | Other | lineage4.6.3;lineage4.9 | None | SRR28351339 | MDR-TB | lineage4 | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | ERR6866807 | Other | lineage4.9 | None | ERR137286 | Other | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | ERR1063896 | Sensitive | None | SRR6045053 | Other | lineage4 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | SRR14801759 | HR-TB | La1.7;lineage4.9 | None | ERR323115 | Sensitive | lineage4.9 | None | ERR4798099 | Other | lineage4.9 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | SRR21733183 | RR-TB | lineage1.1.2 | None | ERR4819051 | Sensitive | lineage4.9 | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | ERR751326 | Other | lineage4.9 | None | ERR4819877 | HR-TB | lineage4.9 | None | ERR4799378 | Sensitive | lineage4.9 | None | ERR4816478 | HR-TB | lineage4 | None | SRR20970016 | Other | lineage2.2.1 | None | SRR29096387 | Sensitive | M.canetti;lineage4.9 | None | SRR5341310 | Other | lineage1.1.2 | None | SRR14782405 | HR-TB | lineage4.9 | None | SRR3675246 | Other | lineage4.9 | None | ERR176751 | Other | lineage4.9 | None | SRR9970980 | Other | lineage4.1.2 | None | ERR4769452 | Other | lineage4.9 | None | SRR5341467 | Other | lineage4.9 | None | ERR3283018 | HR-TB | lineage4.9 | None | SRR3675312 | Sensitive | lineage4.9 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | ERR4797474 | Sensitive | lineage4.9 | None | ERR4819422 | HR-TB | lineage4.9 | None | SRR6045217 | Sensitive | lineage4.9 | None | ERR323062 | Sensitive | lineage4.9 | None | ERR323066 | Sensitive | lineage4.9 | None | SRR3675270 | Other | lineage4.9 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | ERR502511 | Sensitive | lineage4.9 | None | SRR1159378 | Other | lineage4.9 | None | SRR1791747 | Other | La1.8.1 | None | ERR11465604 | HR-TB | lineage4.8.1 | None | ERR702405 | Sensitive | lineage4.9 | None | SRR5341300 | HR-TB | lineage4.9 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | SRR14782054 | Other | lineage4.9 | None | ERR502510 | Sensitive | lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | SRR5341366 | Sensitive | lineage4.9 | None | ERR400529 | Other | lineage3 | None | SRR7898221 | MDR-TB | lineage1.1.2 | None | SRR5341461 | HR-TB | lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR9786444 | Sensitive | lineage4.8 | None | ERR3797043 | Sensitive | lineage4.9 | None | ERR3273109 | HR-TB | lineage4 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | ERR4817731 | HR-TB | lineage4.9 | None | SRR5341453 | Other | lineage4.9 | None | SRR20969708 | HR-TB | lineage2.2.1 | None |
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