Rv0676c - c.2428T>C
Drug resistance types
40 Sensitive
3 RR-TB
98 HR-TB
14 MDR-TB
3 Pre-XDR-TB
0 XDR-TB
41 Other
lineage Counts
| lineage | Count |
|---|---|
| 99 | |
| lineage4.9 | 13 |
| La1.8.1 | 2 |
| lineage2 | 2 |
| lineage4.5 | 1 |
| lineage4.1.1 | 1 |
| lineage4.1 | 2 |
| lineage4.9;lineage4.8.1;lineage4.1.1 | 1 |
| lineage4 | 42 |
| lineage2.1 | 1 |
| lineage1.2.1.1 | 1 |
| lineage4.1.1.2 | 1 |
| lineage2.2.1 | 10 |
| lineage4.3.4.2.1 | 2 |
| lineage1.1.3.1 | 2 |
| lineage1.1.2 | 2 |
| lineage4.9;lineage2.1 | 1 |
| lineage4.1.2.1 | 3 |
| lineage2.2.1.1 | 1 |
| lineage3.1 | 2 |
| La2 | 1 |
| lineage4.1.2 | 2 |
| lineage4.8 | 1 |
| lineage4.3.2.1 | 1 |
| lineage4.4.1.2 | 1 |
| La1 | 1 |
| lineage4.1.2.1.1 | 1 |
| lineage4.3.2 | 1 |
| lineage4.4.1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 199 |
Geographic prevalence
Country level data for this variant is available for 2 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR15368973 | Other | None | SRR13861552 | Sensitive | lineage4.9 | None | SRR1640750 | HR-TB | None | SRR1791747 | Other | La1.8.1 | None | SRR20969677 | HR-TB | lineage2 | None | SRR19303884 | HR-TB | None | SRR19304036 | HR-TB | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR25827453 | MDR-TB | None | ERR176793 | Other | lineage4.1.1 | None | SRR3675464 | HR-TB | lineage4.1 | None | ERR779852 | Sensitive | lineage4.9;lineage4.8.1;lineage4.1.1 | None | SRR3675465 | HR-TB | None | SRR3675482 | HR-TB | None | ERR181824 | HR-TB | lineage4 | None | SRR3675221 | HR-TB | None | SRR3675236 | HR-TB | None | ERR702405 | Sensitive | lineage2.1 | None | ERR161033 | HR-TB | None | SRR3675486 | HR-TB | None | ERR4814734 | Other | lineage1.2.1.1 | None | SRR3675383 | HR-TB | None | SRR3675311 | Other | None | SRR3675246 | Sensitive | lineage4 | None | ERR181887 | HR-TB | None | ERR4817037 | Other | lineage4.9 | None | SRR3675545 | HR-TB | None | ERR4818021 | Other | La1.8.1 | None | SRR3675558 | HR-TB | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR3275196 | Other | lineage2.2.1 | nl | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | SRR5341455 | Sensitive | lineage4 | None | SRR5341387 | Other | lineage4 | None | SRR5341425 | Other | lineage4 | None | ERR2512849 | RR-TB | lineage1.1.3.1 | None | SRR5007188 | Other | lineage4 | None | SRR5341456 | Other | None | SRR5341300 | Other | lineage4 | None | SRR5341298 | Sensitive | lineage4 | None | SRR5341303 | RR-TB | lineage4 | None | SRR5341299 | Sensitive | lineage4 | None | SRR5341310 | Other | lineage1.1.2 | None | SRR5341302 | HR-TB | None | SRR5341308 | Sensitive | lineage4 | None | SRR5341467 | Other | lineage4 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341461 | Sensitive | lineage4 | None | SRR5341366 | Sensitive | lineage4 | None | SRR5341323 | Sensitive | lineage4 | None | SRR5341333 | HR-TB | None | ERR502511 | Sensitive | lineage4.9;lineage2.1 | None | ERR2446563 | Other | lineage2.2.1 | nl | SRR5341469 | Other | lineage4 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | ERR278594 | HR-TB | None | ERR2693239 | HR-TB | None | SRR6045526 | HR-TB | None | SRR6045892 | Sensitive | None | ERR4827442 | MDR-TB | lineage2.2.1 | None | SRR6044790 | HR-TB | None | SRR6044876 | Sensitive | lineage4 | None | SRR6046492 | Other | None | SRR6045233 | HR-TB | None | SRR6046066 | HR-TB | None | SRR6045327 | HR-TB | None | SRR6325442 | HR-TB | None | SRR6046305 | Other | lineage4.9 | None | SRR6045952 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6046397 | Other | None | SRR6046514 | HR-TB | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | SRR6325448 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | SRR6046540 | HR-TB | None | SRR6511621 | HR-TB | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | ERR4831889 | HR-TB | lineage2.2.1 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | ERR294248 | HR-TB | None | SRR6789624 | MDR-TB | lineage4.1 | None | ERR294266 | HR-TB | None | ERR323036 | HR-TB | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR323034 | HR-TB | lineage3.1 | None | ERR502532 | HR-TB | None | ERR502510 | Sensitive | lineage4 | None | ERR502524 | HR-TB | La2 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | ERR5311081 | HR-TB | None | ERR5311099 | HR-TB | None | ERR5311090 | HR-TB | None | ERR323038 | HR-TB | None | SRR9970980 | Other | lineage4.1.2 | None | SRR7535082 | Sensitive | lineage4 | None | ERR323041 | HR-TB | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323055 | HR-TB | None | ERR323108 | HR-TB | lineage4 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR323063 | HR-TB | None | ERR323066 | Sensitive | lineage4 | None | ERR323085 | Sensitive | lineage4 | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR323107 | Other | lineage4 | None | ERR1035122 | Sensitive | None | ERR1034634 | HR-TB | None | ERR1063862 | HR-TB | None | ERR1035157 | Other | lineage4.9 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR1063896 | Sensitive | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR108471 | HR-TB | lineage4 | None | ERR137286 | Sensitive | lineage4 | None | ERR3283010 | Other | La1 | None | ERR3283017 | HR-TB | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283021 | HR-TB | None | ERR3797015 | HR-TB | None | ERR3283027 | HR-TB | None | ERR3283036 | HR-TB | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3468544 | HR-TB | None | ERR3283032 | HR-TB | None | ERR3283040 | HR-TB | None | ERR3283058 | Other | lineage4.9 | None | ERR3445504 | HR-TB | None | ERR3797016 | HR-TB | None | ERR3797043 | HR-TB | None | ERR3797017 | Other | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3797069 | Other | None | ERR3797081 | Sensitive | lineage4 | None | ERR3797079 | Sensitive | lineage4 | None | ERR3797083 | HR-TB | None | ERR3797087 | Sensitive | lineage4 | None | ERR4188350 | HR-TB | None | ERR4024991 | Other | None | ERR4796254 | Sensitive | lineage4 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR4796929 | Sensitive | lineage4 | None | ERR4797264 | Sensitive | None | ERR4797184 | Sensitive | lineage4 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR5336148 | Other | None | ERR4797474 | Other | None | ERR4798099 | Other | None | ERR4811022 | HR-TB | None | ERR4799378 | Sensitive | lineage4 | None | ERR4810741 | HR-TB | None | ERR4811105 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR6866639 | Other | None | ERR6358837 | HR-TB | None | ERR6866022 | Other | None | ERR6866410 | Sensitive | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR702406 | HR-TB | None | ERR736875 | HR-TB | lineage4 | None | ERR736874 | HR-TB | None | ERR751326 | Sensitive | lineage4 | None | ERR736834 | Sensitive | lineage4 | None | ERR736856 | HR-TB | lineage4 | None | ERR736867 | HR-TB | None | ERR736872 | Sensitive | lineage4 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR8976043 | HR-TB | None | SRR069989 | HR-TB | lineage2 | None | ERR9117709 | HR-TB | None | ERR9119669 | HR-TB | None | SRR1158918 | Sensitive | lineage4 | None | SRR10808805 | Sensitive | None | SRR10809074 | Sensitive | lineage4 | None | SRR1169194 | Other | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1172728 | MDR-TB | None | SRR1172310 | HR-TB | None | SRR1172234 | Other | None | SRR1173153 | HR-TB | None | SRR1172817 | HR-TB | None | SRR1172844 | MDR-TB | lineage4.4.1.1 | None | SRR1173568 | Other | lineage4.9 | None | SRR1180996 | HR-TB | lineage4 | None | SRR1173777 | Other | lineage4 | None | SRR1175074 | MDR-TB | None | SRR1173706 | Other | lineage4.9 | None | SRR1173778 | Other | None | SRR1184388 | Other | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184294 | HR-TB | None | SRR1196546 | HR-TB | None | SRR12416824 | HR-TB | None |
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