Rv3596c - c.427_428delTCinsAG


Drug resistance types
15 Sensitive 13 RR-TB 98 HR-TB 23 MDR-TB 6 Pre-XDR-TB 1 XDR-TB 154 Other
lineage Counts
lineage Count
lineage4.9 107
lineage4.1.2.1 11
lineage4 2
La3;lineage4.9 3
lineage4.9;lineage6.1.3 1
lineage1.1.2 1
La1.7;M.canetti;lineage4.9 4
M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
lineage3.1 1
La1.6;La3;M.canetti;lineage2.1;lineage4.9 1
lineage5.2 2
M.canetti;lineage4.2;lineage4.9 1
lineage4.1.1.1 2
lineage4.1;lineage4.8 2
La1.7;lineage4.9;lineage7 3
lineage2.2.1 10
M.canetti;lineage2.1;lineage4.9 2
lineage4.8 3
lineage4.2;lineage4.6.3;lineage4.9.1 2
lineage4.3.1;lineage4.9;lineage6 1
lineage4.1.3 2
lineage4.2;lineage4.6.3;lineage4.9 1
lineage4.1 1
lineage2.1;lineage4.9;lineage6.3 6
La1;lineage4.1.2 1
lineage4.9;lineage7 2
M.canetti;lineage4.9 5
lineage4.2;lineage4.9 1
lineage1.2.2.2 1
lineage4.9;lineage9 1
lineage4.6.2.2 6
La3;lineage2.1;lineage4.9;lineage6.3 2
lineage4.6.3;lineage4.9;lineage6.3 1
lineage3 7
21
La3;lineage2.1;lineage6.3 1
lineage2.2 4
lineage2.1;lineage4.9 13
lineage4.3.4.2.1 3
La2;lineage2.2 1
lineage2.2.2 1
lineage2.2.1.1 1
lineage4.3.4.2 2
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 4
La1.6;La3;lineage4.9 1
La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 2
lineage4.9;lineage6.3 4
La1;lineage4.9 2
lineage4.3.4.1 2
La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 1
La1.7.1;La1.7.X-unk4;lineage7 1
La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 1
lineage2.1 3
M.canetti;lineage2.1;lineage6.3 1
lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 1
lineage6.1.3 1
La1.7;lineage3;lineage4.9;lineage7 1
M.canetti;lineage4.9;lineage9 1
lineage1.1.3.1 1
La1.2.BCG 1
lineage2.2.1.2 2
La3;M.canetti;lineage2.2.1 1
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 1
La1.7.1 1
lineage4.1.2 1
La1.8.1 1
La1.7;lineage4.9 3
La2;lineage4.9 1
La1;lineage2;lineage4.9 1
lineage1.1.1.1 1
La1.2.BCG;La1.8.1 1
lineage4.6.1.1 1
lineage4.4.1.1 2
lineage2.1;lineage4.3.2;lineage4.9 1
M.canetti;lineage1 1
lineage4.3.2.1 1
La3 2
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 1
lineage4.4.1.2 1
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 1
lineage4.7 2
La1.7;lineage4.9;lineage6 1
lineage2.1;lineage6.3 2
La3;lineage2.1;lineage4.9 1
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 1
M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 1
La1.6;La3;lineage4.6.4;lineage4.9 1
La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 1
lineage2.2.1;lineage3 1
La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 1
spoligotype Counts
spoligotype Count
None 310
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR3283030 HR-TB lineage4.9 None
SRR3675232 Other lineage4.1.2.1 None
ERR2027263 Other lineage4 None
ERR4769521 RR-TB lineage4.9 None
SRR1169306 Other La3;lineage4.9 None
ERR176643 Other La3;lineage4.9 None
ERR3445504 Other lineage4.9;lineage6.1.3 None
SRR5341310 Other lineage1.1.2 None
SRR6046783 Other La1.7;M.canetti;lineage4.9 None
SRR6046397 RR-TB M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
ERR323066 HR-TB lineage4.9 None
SRR11662694 Other lineage4.9 None
SRR1184346 HR-TB lineage3.1 None
SRR3675248 Other lineage4.9 None
ERR3283020 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.9 None
SRR6511621 HR-TB lineage4.9 None
ERR4872094 MDR-TB lineage5.2 None
ERR4820854 Other lineage4.1.2.1 None
ERR2041726 MDR-TB lineage4.1.2.1 None
ERR4815441 HR-TB lineage4.9 None
ERR1035122 HR-TB lineage4.9 None
SRR3675571 MDR-TB M.canetti;lineage4.2;lineage4.9 None
ERR176793 Other lineage4.1.1.1 None
ERR926163 Other lineage4.9 None
ERR9786525 RR-TB lineage4.1;lineage4.8 None
SRR3675221 Other lineage4.9 None
SRR1184294 Other lineage4.9 None
ERR323107 HR-TB lineage4.9 None
ERR4819877 HR-TB lineage4.9 None
SRR5341432 Other La1.7;lineage4.9;lineage7 None
ERR4816478 HR-TB lineage4 None
ERR4814352 Other lineage2.2.1 None
ERR736859 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR11049020 Other lineage4.8 None
ERR3290633 Other lineage4.2;lineage4.6.3;lineage4.9.1 None
SRR6046299 Other lineage4.3.1;lineage4.9;lineage6 None
ERR9786611 HR-TB lineage4.1.3 None
SRR14782405 HR-TB lineage4.9 None
ERR5311097 Other lineage4.2;lineage4.6.3;lineage4.9 None
ERR9786440 Other lineage4.1 None
SRR6458423 HR-TB lineage2.2.1 None
ERR702404 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR9970978 Other La1;lineage4.1.2 None
ERR4831117 HR-TB lineage4.9;lineage7 None
SRR6045519 MDR-TB M.canetti;lineage4.9 None
ERR3797046 HR-TB lineage4.9 None
ERR4828872 RR-TB lineage4.2;lineage4.9 None
ERR4797201 Other lineage1.2.2.2 None
SRR6046720 HR-TB lineage4.9;lineage9 None
ERR373947 Other lineage4.9 None
ERR4819809 HR-TB lineage4.6.2.2 None
SRR5341425 Other lineage4.9 None
SRR3675517 Other La3;lineage2.1;lineage4.9;lineage6.3 None
SRR6045892 Sensitive lineage4.9 None
ERR7821163 Other lineage2.2.1 None
SRR3675574 Other lineage4.6.3;lineage4.9;lineage6.3 None
SRR5341412 Pre-XDR-TB lineage3 None
ERR9786645 Other lineage4.6.2.2 None
ERR9786682 Other lineage4.1.2.1 None
ERR369159 Other lineage4.9 None
SRR7496509 Other None
ERR4818615 Sensitive None
ERR11252612 Other La3;lineage4.9 None
SRR1184372 MDR-TB None
ERR2514692 Other None
ERR4817060 Other None
ERR6866807 RR-TB lineage4.9 None
ERR137286 Other lineage4.9 None
ERR4810741 HR-TB La3;lineage2.1;lineage6.3 None
SRR3675449 RR-TB M.canetti;lineage4.9 None
ERR4800341 HR-TB lineage3 None
ERR4810624 MDR-TB lineage2.2 None
SRR1184380 Other lineage2.1;lineage4.9 None
ERR161034 HR-TB lineage4.3.4.2.1 None
ERR702405 HR-TB lineage4.9 None
ERR1063839 MDR-TB La2;lineage2.2 None
SRR18910194 HR-TB lineage2.2.2 None
SRR6079962 HR-TB lineage2.2.1.1 None
ERR9786592 Other lineage4.3.4.2 None
ERR3797017 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR6866639 HR-TB lineage4.9 None
ERR4820773 HR-TB lineage4.9 None
ERR176549 Other lineage4.3.4.2.1 None
ERR926156 Other lineage4.9 None
SRR5341341 Pre-XDR-TB lineage2.2.1 None
SRR6045242 Other lineage2.1;lineage4.9 None
ERR363506 Sensitive lineage4.9 None
ERR3797061 Other La1.6;La3;lineage4.9 None
ERR736848 Other lineage4.9 None
ERR926157 Other lineage4.9 None
ERR990545 RR-TB lineage3 None
ERR2026698 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
SRR5341313 Other La1.7;lineage4.9;lineage7 None
ERR9119669 MDR-TB lineage4.9 None
SRR3675465 Other lineage4.9;lineage6.3 None
ERR736839 HR-TB M.canetti;lineage4.9 None
SRR14782054 Other lineage4.9 None
ERR9786526 Other lineage4.1;lineage4.8 None
ERR1063883 HR-TB lineage4.9 None
SRR14801749 HR-TB lineage4.9 None
SRR3675461 RR-TB lineage4.9 None
ERR3804169 HR-TB lineage4.1.3 None
ERR323043 Other lineage2.1;lineage4.9 None
SRR6045399 Other M.canetti;lineage4.9 None
SRR6789621 Other lineage4.9 None
SRR5341461 HR-TB lineage4.9 None
SRR10808805 Other La1;lineage4.9 None
SRR6045371 Other lineage4.9 None
ERR2446566 Other lineage4.9 None
SRR26399255 Sensitive lineage2.2.1 None
ERR2041725 MDR-TB lineage4.1.2.1 None
ERR3797070 Other lineage4.9 None
SRR3675467 Other lineage2.1;lineage4.9;lineage6.3 None
SRR6045887 Other La1.7;M.canetti;lineage4.9 None
ERR926159 Sensitive lineage4.9 None
ERR2693230 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR3797028 HR-TB M.canetti;lineage4.9 None
SRR10809074 HR-TB lineage4.9 None
SRR13583478 HR-TB lineage4.3.4.1 None
ERR133825 HR-TB La1;lineage4.9 None
ERR3283036 Other lineage2.1;lineage4.9 None
ERR2026696 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 None
SRR3675246 Other lineage4.9 None
ERR3445501 HR-TB La1.7.1;La1.7.X-unk4;lineage7 None
ERR2693257 HR-TB La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 None
ERR363453 Other lineage4.9 None
ERR9119500 MDR-TB lineage5.2 None
SRR6044790 Other lineage2.1;lineage4.9 None
SRR1158918 Other lineage4.9 None
ERR4797054 Pre-XDR-TB lineage2.1 None
ERR9786346 Sensitive lineage4.3.4.2 None
ERR3283040 HR-TB lineage4.9 None
ERR502532 Other M.canetti;lineage2.1;lineage6.3 None
SRR1180137 RR-TB lineage2.2.1 None
SRR12416840 MDR-TB lineage4.9 None
ERR11465352 Sensitive lineage4.3.4.1 None
ERR6358991 HR-TB lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 None
ERR9787165 Other lineage6.1.3 None
SRR5341315 Other La1.7;lineage3;lineage4.9;lineage7 None
ERR502510 HR-TB lineage4.9 None
SRR17658565 Pre-XDR-TB lineage3 None
ERR3283018 HR-TB lineage4.9 None
ERR4819241 Other lineage4.9 None
SRR3675505 Other La1.7;M.canetti;lineage4.9 None
ERR2026697 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
ERR9786617 Other lineage4.1.1.1 None
ERR926161 Sensitive lineage4.9 None
ERR736856 HR-TB lineage4.9 None
ERR502511 HR-TB lineage4.9 None
ERR1063856 HR-TB M.canetti;lineage4.9;lineage9 None
ERR363456 Sensitive lineage4.9 None
ERR8479578 HR-TB lineage1.1.3.1 None
SRR1184381 MDR-TB None
ERR9786843 Other None
ERR234659 HR-TB None
SRR7496517 Other None
ERR9787197 Other None
SRR3675236 Other None
ERR6358979 HR-TB lineage4.9 None
ERR3797029 Other lineage4.9 None
ERR4798262 HR-TB La1.2.BCG None
SRR3675524 Other lineage4.9;lineage6.3 None
ERR373945 Other lineage4.9 None
SRR1175127 Other lineage2.2.1.2 None
SRR13423649 Other lineage2.2.1 None
SRR3742657 Pre-XDR-TB La3;M.canetti;lineage2.2.1 None
ERR2693252 HR-TB lineage4.9 None
SRR1173629 Other lineage2.1;lineage4.9 None
SRR12416824 HR-TB lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
SRR1159378 Other lineage4.9 None
ERR4818929 HR-TB lineage4.9 None
ERR2026695 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 None
ERR3283055 HR-TB lineage4.9 None
SRR1792478 HR-TB La1.7.1 None
SRR9970980 HR-TB lineage4.1.2 None
SRR1791747 Other La1.8.1 None
SRR20969708 HR-TB lineage2.2 None
ERR926165 Other lineage4.9 None
SRR3675492 Other La1.7;lineage4.9 None
ERR9896144 Other lineage3 None
ERR702406 Other lineage2.1 None
SRR6044942 HR-TB lineage4.9 None
ERR926162 Sensitive lineage4.9 None
SRR3675214 Other lineage4.9 None
SRR6046225 Other lineage4.9;lineage6.3 None
ERR4799025 Other lineage4.8 None
ERR1063857 MDR-TB La2;lineage4.9 None
ERR067699 HR-TB La1;lineage2;lineage4.9 None
SRR26399491 Sensitive lineage1.1.1.1 None
ERR4818021 Other La1.2.BCG;La1.8.1 None
ERR6358755 Other lineage4.6.1.1 None
ERR9786627 Other lineage4.1.2.1 None
ERR3283019 Other lineage2.1;lineage4.9 None
SRR1173778 Other lineage4.9 None
ERR3797014 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR4816559 MDR-TB lineage4.4.1.1 None
ERR124636 HR-TB lineage4.9 None
ERR9119525 MDR-TB lineage4.6.2.2 None
ERR926158 Sensitive lineage4.9 None
SRR3675267 Other La1.7;lineage4.9 None
SRR5341308 HR-TB lineage4.9 None
SRR6045327 Other lineage2.1;lineage4.3.2;lineage4.9 None
SRR15014655 Other M.canetti;lineage1 None
ERR1063846 HR-TB lineage4.9 None
ERR3797085 Other lineage4.9 None
SRR9970981 RR-TB lineage4.3.2.1 None
SRR7496472 Other lineage4.9 None
SRR6046521 Other lineage4.4.1.1 None
ERR323062 HR-TB lineage4.9 None
ERR4872119 MDR-TB lineage4.6.2.2 None
SRR6046210 Other lineage4.9 None
ERR212121 HR-TB lineage4.9;lineage6.3 None
ERR751326 Other lineage4.9 None
SRR6046540 Other lineage2.1;lineage4.9 None
ERR3445502 HR-TB lineage4.9;lineage7 None
ERR4769474 HR-TB lineage4.9 None
ERR176751 HR-TB lineage4.9 None
ERR4817731 HR-TB lineage4.9 None
ERR3801503 Other lineage4.6.2.2 None
SRR5341453 Other lineage4.9 None
SRR1172728 RR-TB La3 None
SRR12416842 HR-TB lineage4.9 None
ERR3804155 Other lineage4.1.2.1 None
ERR3283042 HR-TB lineage4.9 None
ERR1334034 Other lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 None
ERR926164 Other lineage4.9 None
ERR363509 Sensitive lineage4.9 None
ERR4816656 Other lineage4.9 None
ERR4819781 Other lineage2.2.1 None
SRR6044876 Sensitive lineage4.9 None
ERR9786694 Other lineage4.1.2.1 None
SRR3675457 Other lineage4.9 None
ERR473332 Other lineage4.9 None
SRR1172796 Sensitive lineage2.2.1.2 None
ERR736867 Other lineage2.1;lineage4.9 None
ERR4797588 MDR-TB lineage3 None
SRR5341467 Other lineage4.9 None
ERR9786711 Other lineage4.6.2.2 None
ERR736871 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR1172817 Other La3 None
ERR323056 HR-TB lineage4.4.1.2 None
ERR9786601 Other lineage4.1.2.1 None
SRR3675490 Other lineage2.1;lineage4.9;lineage6.3 None
SRR3675311 Other lineage4.9 None
ERR4819422 HR-TB lineage4.9 None
SRR6045380 Other lineage2.1;lineage4.9 None
ERR736834 HR-TB lineage4.9 None
ERR3283026 HR-TB lineage4.2;lineage4.6.3;lineage4.9.1 None
ERR6359082 Other lineage4.9 None
SRR5341299 HR-TB lineage4.9 None
ERR736863 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR926155 Other lineage4.9 None
SRR7131023 Other lineage4.1.2.1 None
SRR11662690 HR-TB lineage4.9 None
SRR19304036 Other La3;lineage2.1;lineage4.9;lineage6.3 None
SRR7496523 Other lineage4.7 None
SRR5341456 Other lineage4.9 None
SRR20970016 Other lineage2.2 None
ERR971389 Other lineage4.9 None
ERR9786642 Other lineage4.1.2.1 None
SRR3675572 Other None
ERR1063896 HR-TB None
SRR1175074 Other None
ERR9786604 Other None
ERR4815604 Other None
SRR6789626 Other None
SRR7535086 Other None
SRR18213713 HR-TB None
ERR212001 HR-TB None
ERR4816999 Other None
SRR28044873 Pre-XDR-TB lineage3 None
ERR6866547 Other La1.7;lineage4.9;lineage6 None
SRR1196583 Other lineage4.9 None
ERR4797474 Other lineage4.9 None
SRR3675441 RR-TB lineage4.9 None
SRR3675275 Other lineage4.9 None
ERR4797264 HR-TB lineage4.9 None
ERR736872 HR-TB lineage4.9 None
ERR736835 HR-TB La1.7;M.canetti;lineage4.9 None
ERR4798493 MDR-TB lineage2.2.1 None
ERR5336148 Other lineage2.1;lineage6.3 None
ERR176568 HR-TB La3;lineage2.1;lineage4.9 None
ERR3797044 Other La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 None
ERR3283027 Other lineage2.1;lineage4.9;lineage6.3 None
ERR4798099 HR-TB lineage4.9 None
SRR3675581 Other lineage2.1;lineage4.9 None
SRR1184388 Other lineage2.1;lineage4.9 None
SRR1183049 RR-TB lineage2.2 None
ERR4811022 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR3797069 Other lineage4.9 None
ERR4819932 Other lineage4.7 None
ERR2693245 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR19303884 Other lineage2.1;lineage6.3 None
SRR3675501 Other La1.7;lineage4.9 None
ERR9786569 Other lineage4.8 None
SRR3675529 Other lineage2.1;lineage4.9;lineage6.3 None
SRR7535082 Other lineage4.9 None
ERR3797015 HR-TB lineage4.9 None
SRR20969731 Other lineage2.2.1 None
ERR245794 HR-TB lineage4.3.4.2.1 None
ERR6359045 Other M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 None
SRR5341422 HR-TB La1.7;lineage4.9;lineage7 None
ERR2693231 HR-TB La1.6;La3;lineage4.6.4;lineage4.9 None
ERR3283024 HR-TB La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 None
SRR5341300 HR-TB lineage4.9 None
SRR6045526 Other lineage4.9 None
SRR12142341 HR-TB lineage2.1 None
SRR5341333 HR-TB lineage2.1;lineage4.9 None
SRR25827497 XDR-TB lineage2.2.1;lineage3 None
SRR3675234 HR-TB La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 None