Rv0005 - c.1995C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
16 Sensitive
3 RR-TB
26 HR-TB
5 MDR-TB
4 Pre-XDR-TB
0 XDR-TB
66 Other
lineage Counts
| lineage | Count |
|---|---|
| 14 | |
| lineage2.1;lineage4.9 | 9 |
| lineage4.9;lineage6.3 | 5 |
| lineage4.9 | 36 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 7 |
| lineage4.3.4 | 1 |
| La3;lineage2.1;lineage4.9 | 3 |
| lineage2.2.1.2 | 1 |
| La3;lineage4.9 | 4 |
| lineage2.2.1 | 7 |
| lineage4.3.4.2.1 | 1 |
| lineage4.1.2.1 | 2 |
| lineage1.2.1.2 | 4 |
| lineage1.1.2 | 1 |
| La3 | 2 |
| lineage4.1.2 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.1;lineage6.3 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| La1.7 | 1 |
| lineage4.3.4.2 | 1 |
| lineage4.1.3 | 2 |
| lineage3 | 1 |
| lineage2.1 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage1.2.2.2 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| M.canetti;lineage4.9 | 1 |
| lineage4.1.1.1 | 1 |
| lineage4.1.1.3 | 1 |
| lineage4.3.4.1 | 1 |
| lineage3.1 | 1 |
| lineage4.1.1.3;lineage4.8 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 120 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR234659 | Other | None | ERR4817060 | Other | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | ERR323062 | Sensitive | lineage4.9 | None | SRR1158918 | Sensitive | lineage4.9 | None | SRR1172951 | Other | lineage4.9 | None | SRR1173778 | Other | lineage4.9 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675508 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR736872 | HR-TB | lineage4.9 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | ERR4797054 | Pre-XDR-TB | lineage2.2.1.2 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR1165628 | Other | La3;lineage4.9 | None | SRR1196494 | MDR-TB | None | SRR1184312 | Other | lineage2.2.1 | None | SRR6045526 | Other | lineage4.9 | None | SRR3675235 | Sensitive | lineage4.9 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | SRR6789626 | Other | None | ERR4810741 | HR-TB | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4811075 | Other | None | SRR28119753 | Other | lineage4.9 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR751326 | Other | lineage4.9 | None | ERR1035122 | Sensitive | lineage4.9 | None | SRR8217918 | HR-TB | lineage4.9 | None | ERR3797064 | Other | La3;lineage4.9 | None | ERR13273164 | Sensitive | lineage1.2.1.2 | None | SRR5341310 | Other | lineage1.1.2 | None | SRR1172817 | Other | La3 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR9970980 | Other | lineage4.1.2 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR28860097 | Sensitive | lineage1.2.1.2 | None | ERR4814352 | Other | lineage2.2.1 | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | SRR1167384 | Other | La3;lineage4.9 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1196583 | Other | lineage4.9 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR18213713 | HR-TB | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR26111975 | Sensitive | lineage1.2.1.2 | None | SRR26399973 | Other | La3;lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR323107 | Sensitive | lineage4.9 | None | SRR5341300 | HR-TB | lineage4.9 | None | ERR4830353 | Other | La1.7 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4798099 | Other | lineage4.9 | None | ERR7902748 | Sensitive | lineage1.2.1.2 | None | ERR176549 | Other | lineage4.3.4.2 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | ERR4800341 | Other | None | ERR4811105 | HR-TB | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR124636 | Sensitive | lineage4.9 | None | ERR4811142 | RR-TB | None | ERR4797588 | MDR-TB | lineage3 | None | SRR5341461 | HR-TB | lineage4.9 | None | SRR7535086 | Other | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR702406 | Other | lineage2.1 | None | SRR5341308 | Sensitive | lineage4.9 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | ERR4800590 | MDR-TB | lineage1.2.2.2 | in | SRR1184294 | Other | lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | ERR4819781 | Other | lineage2.2.1 | None | ERR736875 | HR-TB | lineage4.9 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | ERR137286 | Other | lineage4.9 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | ERR1035157 | Other | lineage4.9 | None | ERR176793 | Other | lineage4.1.1.1 | None | SRR10315587 | RR-TB | lineage4.1.1.3 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR13265833 | Other | lineage4.9 | None | ERR2660539 | Other | lineage4.9 | None | ERR4797184 | Sensitive | lineage4.9 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | SRR3675236 | Other | None | SRR12416824 | HR-TB | None | SRR1165699 | Other | lineage4.9 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | SRR5341453 | Other | lineage4.9 | None | SRR1172728 | RR-TB | La3 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR1173400 | Other | lineage4.9 | None | SRR28119811 | Other | lineage2.2.1 | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | SRR5341467 | Other | lineage4.9 | None | ERR323085 | Sensitive | lineage4.9 | None | SRR1184346 | HR-TB | lineage3.1 | None | ERR736834 | Sensitive | lineage4.9 | None | SRR10315576 | MDR-TB | lineage4.1.1.3;lineage4.8 | None | ERR4797264 | Sensitive | lineage4.9 | None | SRR1184381 | MDR-TB | None |
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