EBG00000313339 - n.11C>T


Drug resistance types
38 Sensitive 14 RR-TB 85 HR-TB 47 MDR-TB 8 Pre-XDR-TB 2 XDR-TB 96 Other
lineage Counts
lineage Count
lineage4.9 119
lineage4.4.1.1.1 1
La3;lineage2.1;lineage4.9 3
lineage2.1;lineage4.9 9
lineage2.2.1 9
lineage2.1;lineage4.9;lineage6.3 7
lineage2.2 3
lineage2.1 1
La3;M.canetti;lineage2.1;lineage4.9 7
La3;lineage4.9 8
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 2
M.canetti;lineage2.2 3
La2;lineage4.9 2
La3;lineage2.1;lineage4.9;lineage6.3 3
M.canetti;lineage4.9 2
lineage2.2.1;lineage6.3 1
lineage4.9;lineage6.1.3 1
lineage1.1.2 2
lineage4 1
La1.2;La1.8.1 1
lineage1;lineage4.9 1
lineage4.9;lineage9 2
La1;lineage4.9 2
M.canetti;lineage4.2;lineage4.9 1
lineage2.1;lineage4.1.1.1;lineage6.3 2
lineage2.2.1.2;lineage7 1
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 4
La3 2
lineage4.8 2
lineage4.3.1;lineage4.9;lineage6 1
lineage2.2.1.2 2
La1;lineage4.1.2 1
lineage4.2;lineage4.8.1;lineage4.9 1
lineage2.2.1;lineage4.9 1
12
La1.7;lineage4.9;lineage6 1
lineage4.5 1
lineage4.6.1.1 2
La3;lineage2.1;lineage6.3 1
M.canetti;lineage2.1;lineage4.9 5
lineage4.3.4 1
lineage2.1;lineage6.3 1
La1.7.1 1
lineage4.1.2 1
M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
lineage3 1
La1.7;lineage4.9;lineage7 1
lineage2.2.1;lineage4 1
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 1
M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
La3;M.canetti;lineage4.8;lineage4.9 1
La1.7.1;La1.7.X-unk4 1
lineage2.1;lineage4.1.4;lineage4.9 1
lineage4.3.2.1 1
lineage4.1.1.3 3
lineage4.1.1.1 1
lineage4.3.2;lineage4.9 1
lineage2;lineage4.9 1
lineage4.3.3 2
La1.7;lineage4.9 4
La1.7.1;La1.7.X-unk4;lineage7 1
lineage2.2.1.1 1
La3;lineage2 1
lineage4.9;lineage6.3 5
La1.2.BCG 1
La1.7;M.canetti;lineage4.9 1
lineage2.1;lineage2.2;lineage6.3 1
La3;M.canetti;lineage2.2.1 1
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
La2;lineage2.2 1
La3;M.canetti;lineage2.1;lineage3.1 1
La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
lineage4.3.4.2.1 1
La1;lineage2;lineage4.9 1
lineage5.2 2
La1.7;lineage3.1;lineage4 1
lineage3.1.1 1
La2;lineage4.9;lineage9 1
La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 1
La1.7.1;lineage4.9 1
M.canetti;lineage2.1;lineage6.3 2
lineage4.9;lineage7 1
lineage4.4.1.2 1
La1.7;lineage4.2 1
La3;M.canetti;lineage3.1 1
lineage1.1.3.1 1
lineage4.6.3;lineage4.9 1
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
spoligotype Counts
spoligotype Count
None 290
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR5341330 Other lineage4.9 None
SRR1180345 Other lineage4.9 None
SRR1181215 Sensitive lineage4.4.1.1.1 None
ERR176568 HR-TB La3;lineage2.1;lineage4.9 None
SRR3675581 Other lineage2.1;lineage4.9 None
SRR10808668 Other lineage2.2.1 None
ERR4811075 Other lineage2.1;lineage4.9;lineage6.3 None
SRR1184388 Other lineage2.1;lineage4.9 None
SRR1173629 Other lineage2.1;lineage4.9 None
SRR20969708 HR-TB lineage2.2 None
ERR702406 Other lineage2.1 None
ERR323063 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR1167384 Other La3;lineage4.9 None
SRR20969731 Other lineage2.2.1 None
ERR926157 Other lineage4.9 None
SRR6325448 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR1180226 HR-TB lineage4.9 None
SRR1184021 Sensitive lineage4.9 None
ERR1873396 Pre-XDR-TB M.canetti;lineage2.2 None
ERR1063857 MDR-TB La2;lineage4.9 None
ERR4811105 HR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
ERR4811311 Other lineage2.1;lineage4.9;lineage6.3 None
SRR6045526 Other lineage4.9 None
SRR1175487 Sensitive lineage4.9 None
ERR736839 HR-TB M.canetti;lineage4.9 None
SRR1173778 Other lineage4.9 None
ERR4769521 RR-TB lineage4.9 None
SRR28119811 Other lineage2.2.1;lineage6.3 None
ERR3445504 Other lineage4.9;lineage6.1.3 None
SRR5341310 Other lineage1.1.2 None
SRR1181349 Sensitive lineage4 None
SRR7240033 Other La1.2;La1.8.1 None
SRR14801749 HR-TB lineage4.9 None
SRR1180312 Sensitive lineage4.9 None
ERR323064 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR124636 HR-TB lineage4.9 None
ERR4799478 Pre-XDR-TB lineage2.2.1 None
ERR176778 HR-TB lineage4.9 None
ERR926158 Sensitive lineage4.9 None
ERR323045 HR-TB lineage1;lineage4.9 None
SRR5341308 HR-TB lineage4.9 None
ERR926160 Other lineage4.9 None
SRR5341470 MDR-TB lineage4.9;lineage9 None
SRR2667439 Sensitive lineage4.9 None
SRR1180996 Other lineage4.9 None
SRR10808805 Other La1;lineage4.9 None
ERR323062 HR-TB lineage4.9 None
SRR3675571 MDR-TB M.canetti;lineage4.2;lineage4.9 None
ERR1063862 HR-TB lineage4.9 None
SRR6325442 MDR-TB lineage2.1;lineage4.1.1.1;lineage6.3 None
ERR926163 Other lineage4.9 None
SRR5341387 Other lineage4.9 None
SRR1181325 Sensitive lineage4.9 None
ERR751326 Other lineage4.9 None
SRR18549032 HR-TB lineage2.2.1.2;lineage7 None
ERR2229143 RR-TB lineage4.9 None
ERR176779 HR-TB lineage4.9 None
SRR1180319 Sensitive lineage4.9 None
SRR1172951 Other lineage4.9 None
ERR4769474 HR-TB lineage4.9 None
SRR1184294 Other lineage4.9 None
ERR126618 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR4817731 HR-TB lineage4.9 None
SRR1172728 RR-TB La3 None
ERR3797064 Other La3;lineage4.9 None
ERR11049020 Other lineage4.8 None
SRR6046299 Other lineage4.3.1;lineage4.9;lineage6 None
ERR473332 Other lineage4.9 None
SRR1172796 Sensitive lineage2.2.1.2 None
ERR736867 Other lineage2.1;lineage4.9 None
SRR1180391 Sensitive lineage4.9 None
SRR9970978 Other La1;lineage4.1.2 None
ERR4769452 Other lineage4.9 None
SRR6045785 MDR-TB lineage4.2;lineage4.8.1;lineage4.9 None
SRR3675508 MDR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR1181390 Sensitive lineage2.2.1;lineage4.9 None
ERR736834 HR-TB lineage4.9 None
SRR5341299 HR-TB lineage4.9 None
ERR736863 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR736856 HR-TB lineage4.9 None
ERR502511 HR-TB lineage4.9 None
SRR1184381 MDR-TB None
ERR1063896 HR-TB None
ERR9786604 Other None
SRR6789626 Other None
SRR25827682 Other None
ERR323040 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR137286 Other lineage4.9 None
ERR6866547 Other La1.7;lineage4.9;lineage6 None
ERR752229 Other lineage4.5 None
ERR1199132 Sensitive lineage4.6.1.1 None
ERR4810741 HR-TB La3;lineage2.1;lineage6.3 None
ERR1035239 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR736872 HR-TB lineage4.9 None
SRR1180300 Sensitive lineage4.9 None
SRR1184380 Other lineage2.1;lineage4.9 None
ERR2514327 HR-TB lineage4.8 None
ERR736817 HR-TB lineage4.3.4 None
ERR702405 HR-TB lineage4.9 None
ERR294248 MDR-TB lineage2.1;lineage4.9 None
SRR2667440 Sensitive lineage4.9 None
ERR124652 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR5535933 Other lineage4.9 None
SRR19303884 Other lineage2.1;lineage6.3 None
SRR1792478 HR-TB La1.7.1 None
SRR9970980 HR-TB lineage4.1.2 None
ERR124642 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
SRR6046141 Other lineage4.9 None
ERR6866410 HR-TB lineage4.9 None
ERR926156 Other lineage4.9 None
ERR926154 Sensitive lineage4.9 None
ERR990545 RR-TB lineage3 None
SRR5341313 Other La1.7;lineage4.9;lineage7 None
SRR5341333 HR-TB lineage2.1;lineage4.9 None
ERR181887 Other lineage4.9 None
ERR323060 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR1181237 Sensitive lineage2.2.1;lineage4 None
ERR3797014 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR386953 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR8552928 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR6046397 RR-TB M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
ERR323066 HR-TB lineage4.9 None
ERR323043 Other lineage2.1;lineage4.9 None
ERR038268 MDR-TB La3;M.canetti;lineage4.8;lineage4.9 None
ERR3797063 Other La3;lineage4.9 None
ERR3445503 Other La1.7.1;La1.7.X-unk4 None
ERR3797036 HR-TB lineage2.1;lineage4.1.4;lineage4.9 None
ERR3283011 Other La3;lineage4.9 None
ERR1063849 HR-TB lineage4.9 None
SRR5341461 HR-TB lineage4.9 None
SRR9970981 RR-TB lineage4.3.2.1 None
ERR1873393 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR6511621 HR-TB lineage4.9 None
SRR6789624 HR-TB lineage4.1.1.3 None
ERR736875 HR-TB lineage4.9 None
ERR176793 Other lineage4.1.1.1 None
ERR2446566 Other lineage4.9 None
ERR736865 MDR-TB lineage4.3.2;lineage4.9 None
SRR1180946 Sensitive lineage2;lineage4.9 None
SRR1180977 Sensitive lineage4.9 None
SRR1175513 Sensitive lineage4.9 None
SRR1165699 Other lineage4.9 None
ERR108471 HR-TB lineage4.9 None
ERR1063858 HR-TB lineage4.9 None
SRR1183111 HR-TB lineage4.9 None
SRR1184298 Pre-XDR-TB lineage4.3.3 None
ERR323108 HR-TB La1.7;lineage4.9 None
SRR1181289 RR-TB lineage2.2.1 None
ERR3283014 Other La3;lineage4.9 None
SRR12416842 HR-TB lineage4.9 None
ERR926164 Other lineage4.9 None
SRR1180444 Sensitive lineage4.9 None
ERR3445501 HR-TB La1.7.1;La1.7.X-unk4;lineage7 None
SRR1172234 Other lineage4.9 None
SRR1165628 Other La3;lineage4.9 None
SRR1180147 RR-TB lineage2.2.1.1 None
SRR1196571 Pre-XDR-TB lineage4.3.3 None
SRR20969677 HR-TB La3;lineage2 None
SRR1180399 Sensitive lineage4.9 None
SRR1158918 Other lineage4.9 None
SRR1196546 Other lineage4.9 None
SRR5341467 Other lineage4.9 None
ERR736871 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR11972367 Sensitive lineage2.2.1 None
SRR1172817 Other La3 None
ERR502510 HR-TB lineage4.9 None
SRR1180172 RR-TB lineage2.2.1 None
ERR216938 HR-TB La1.7;lineage4.9 None
ERR4819422 HR-TB lineage4.9 None
SRR1183144 RR-TB lineage2.2.1 None
ERR1034634 HR-TB lineage4.9 None
ERR4831545 XDR-TB M.canetti;lineage2.2 None
ERR926161 Sensitive lineage4.9 None
ERR971389 Other lineage4.9 None
ERR181824 MDR-TB lineage4.9 None
SRR28119756 Other lineage4.9;lineage6.3 None
ERR9786843 Other None
SRR1184372 MDR-TB None
ERR11252736 Other lineage4.9 None
SRR7535086 Other None
ERR987722 MDR-TB None
SRR1196768 MDR-TB None
SRR28119777 Other lineage4.9 None
SRR1173568 Sensitive lineage4.9 None
ERR278594 MDR-TB lineage2.1;lineage4.9 None
SRR6325445 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR4798262 HR-TB La1.2.BCG None
ERR736835 HR-TB La1.7;M.canetti;lineage4.9 None
ERR779852 HR-TB lineage4.9 None
ERR176651 Other lineage4.9 None
ERR4810624 MDR-TB lineage2.2 None
SRR1175127 Other lineage2.2.1.2 None
ERR8976043 MDR-TB lineage2.1;lineage2.2;lineage6.3 None
SRR3742657 Pre-XDR-TB La3;M.canetti;lineage2.2.1 None
SRR5341298 Other lineage4.9 None
SRR1180375 Sensitive lineage4.9 None
ERR736874 Other La3;lineage2.1;lineage4.9 None
SRR12416824 HR-TB lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
SRR1180420 Sensitive lineage4.9 None
ERR1063839 MDR-TB La2;lineage2.2 None
SRR2667437 Sensitive lineage4.9 None
ERR4811022 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR323034 MDR-TB La3;M.canetti;lineage2.1;lineage3.1 None
ERR11465025 Other lineage4.1.1.3 None
ERR124651 MDR-TB La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
ERR926165 Other lineage4.9 None
ERR4820773 HR-TB lineage4.9 None
SRR7535082 Other lineage4.9 None
ERR926162 Sensitive lineage4.9 None
ERR245794 HR-TB lineage4.3.4.2.1 None
ERR736848 Other lineage4.9 None
SRR5341300 HR-TB lineage4.9 None
ERR323115 Sensitive lineage4.9 None
ERR9119669 MDR-TB lineage4.9 None
SRR2667443 Sensitive lineage4.9 None
ERR067699 HR-TB La1;lineage2;lineage4.9 None
ERR9119483 Pre-XDR-TB lineage5.2 None
SRR5341384 HR-TB lineage4.9 None
ERR736837 Pre-XDR-TB lineage4.9 None
SRR1174897 MDR-TB lineage4.9;lineage9 None
SRR1181351 Sensitive lineage4.9 None
SRR16156817 Other lineage4.9 None
ERR405219 HR-TB La1.7;lineage3.1;lineage4 None
SRR6045219 HR-TB lineage4.9 None
SRR23961558 RR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR987765 Sensitive lineage4.6.1.1 None
ERR4811142 RR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
ERR1063846 HR-TB lineage4.9 None
ERR323058 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR6325447 MDR-TB lineage2.1;lineage4.1.1.1;lineage6.3 None
ERR502524 MDR-TB lineage4.9;lineage6.3 None
ERR4815441 HR-TB lineage4.9 None
SRR1196474 Other lineage3.1.1 None
ERR1035122 HR-TB lineage4.9 None
SRR1180355 Sensitive lineage4.9 None
ERR1023525 HR-TB La1.7;lineage4.9 None
ERR323053 MDR-TB La2;lineage4.9;lineage9 None
ERR926159 Sensitive lineage4.9 None
ERR323107 HR-TB lineage4.9 None
ERR6358837 MDR-TB La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR126600 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR4797193 HR-TB lineage1.1.2 None
ERR1063859 HR-TB La1.7.1;lineage4.9 None
ERR323039 MDR-TB La2;lineage4.9 None
SRR6325444 MDR-TB M.canetti;lineage2.1;lineage6.3 None
SRR5341453 Other lineage4.9 None
ERR3797028 HR-TB M.canetti;lineage4.9 None
ERR8665994 RR-TB lineage4.9 None
ERR736859 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR133825 HR-TB La1;lineage4.9 None
SRR19295647 HR-TB lineage4.9 None
SRR6458423 HR-TB lineage2.2.1 None
ERR702404 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR4831117 HR-TB lineage4.9;lineage7 None
ERR4797184 HR-TB lineage4.9 None
ERR3797046 HR-TB lineage4.9 None
SRR5341302 Other La3;lineage2.1;lineage4.9 None
ERR502532 Other M.canetti;lineage2.1;lineage6.3 None
SRR1180137 RR-TB lineage2.2.1 None
SRR6044835 Other lineage4.9 None
ERR4872077 Pre-XDR-TB lineage5.2 None
SRR1180413 Sensitive lineage4.9 None
ERR11465024 Other lineage4.1.1.3 None
ERR323056 HR-TB lineage4.4.1.2 None
ERR212125 HR-TB lineage4.9 None
ERR126608 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR23961559 Other La1.7;lineage4.2 None
SRR3675311 Other lineage4.9 None
ERR3283057 Sensitive La3;lineage4.9 None
ERR323033 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR323054 MDR-TB La3;M.canetti;lineage3.1 None
SRR1165667 Other lineage4.9;lineage6.3 None
SRR1180410 Sensitive lineage4.9 None
SRR19304036 Other La3;lineage2.1;lineage4.9;lineage6.3 None
SRR5341456 Other lineage4.9 None
ERR4811493 HR-TB lineage4.9 None
SRR20970016 Other lineage2.2 None
ERR3283025 MDR-TB La1.7;lineage4.9 None
ERR8479578 HR-TB lineage1.1.3.1 None
ERR9786671 Other None
SRR28119717 Other lineage4.9;lineage6.3 None
ERR11252558 Other lineage4.6.3;lineage4.9 None
ERR11252612 Other La3;lineage4.9 None
ERR234659 HR-TB None
SRR28119805 Other lineage4.9 None
SRR1196583 Other lineage4.9 None
ERR1035157 Other lineage4.9 None
ERR7911670 XDR-TB M.canetti;lineage2.2 None
SRR3675524 Other lineage4.9;lineage6.3 None
SRR3742665 HR-TB M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None