EBG00000313339 - n.11C>T


Drug resistance types
71 Sensitive 5 RR-TB 86 HR-TB 24 MDR-TB 8 Pre-XDR-TB 2 XDR-TB 100 Other
lineage Counts
lineage Count
La3;M.canetti;lineage2.1;lineage4.9 7
lineage4.9 122
lineage4.9;lineage6.3 7
La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 1
La3;M.canetti;lineage4.8;lineage4.9 1
La3;lineage2.1;lineage4.9;lineage6.3 3
lineage2.2.1.2;lineage7 1
lineage4.6.1.1 2
lineage2.2 3
lineage2.2.1.2 2
lineage4.8 2
lineage4.3.4 1
12
lineage2.1;lineage4.9;lineage6.3 7
lineage2.1;lineage4.9 9
La1.7;lineage4.9;lineage7 1
lineage5.2 2
lineage4.3.3 2
La1.7;lineage4.9 4
La2;lineage4.9 2
M.canetti;lineage4.9 2
lineage1.1.2 2
La3;lineage4.9 8
lineage1;lineage4.9 1
La1.2;La1.8.1 1
La1.7;lineage3.1;lineage4 1
La1;lineage2;lineage4.9 1
lineage3.1.1 1
lineage2.1;lineage4.1.1.1;lineage6.3 2
lineage4.1.1.3 3
lineage4.3.4.2.1 1
La3 2
M.canetti;lineage2.1;lineage4.9 5
lineage2.1 1
La1;lineage4.9 2
La1.7.1;La1.7.X-unk4;lineage7 1
La1;lineage4.1.2 1
lineage4.9;lineage7 1
lineage2.1;lineage2.2;lineage6.3 1
lineage2.2.1.1 1
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 2
La1.7;M.canetti;lineage4.9 1
M.canetti;lineage2.2 3
La1.7;lineage4.9;lineage6 1
lineage4.5 1
lineage2.2.1 9
La3;lineage2.1;lineage6.3 1
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
La3;M.canetti;lineage2.2.1 1
La2;lineage2.2 1
lineage2;lineage4.9 1
La3;M.canetti;lineage2.1;lineage3.1 1
lineage2.1;lineage6.3 1
La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
lineage4.1.2 1
lineage4.3.1;lineage4.9;lineage6 1
M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
lineage2.2.1;lineage4 1
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 4
lineage2.2.1;lineage6.3 1
La1.7.1;La1.7.X-unk4 1
lineage4.9;lineage9 2
lineage2.1;lineage4.1.4;lineage4.9 1
lineage4.3.2.1 1
lineage4.4.1.2 1
La3;lineage2.1;lineage4.9 3
M.canetti;lineage2.1;lineage6.3 2
lineage4.2;lineage4.8.1;lineage4.9 1
La1.7;lineage4.2 1
lineage2.2.1;lineage4.9 1
La1.2.BCG 1
La3;M.canetti;lineage3.1 1
lineage4.6.3;lineage4.9 1
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
lineage4.3.2;lineage4.9 1
lineage4.9;lineage6.1.3 1
M.canetti;lineage4.2;lineage4.9 1
lineage4.4.1.1.1 1
La3;lineage2 1
La1.7.1 1
La3;lineage2.2.2 1
lineage4.1.1.1 1
La2;lineage4.9;lineage9 1
La1.7.1;lineage4.9 1
lineage3 1
lineage4 1
lineage1.1.3.1 1
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 1
M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
spoligotype Counts
spoligotype Count
None 296
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR323060 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR6046141 Other lineage4.9 None
SRR1175513 Sensitive lineage4.9 None
SRR1180410 Sensitive lineage4.9 None
ERR13265528 Other lineage4.9;lineage6.3 None
ERR502524 HR-TB lineage4.9;lineage6.3 None
ERR6358837 HR-TB La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR038268 HR-TB La3;M.canetti;lineage4.8;lineage4.9 None
ERR323062 Sensitive lineage4.9 None
SRR19304036 Other La3;lineage2.1;lineage4.9;lineage6.3 None
ERR176651 Other lineage4.9 None
SRR18549032 HR-TB lineage2.2.1.2;lineage7 None
ERR323066 Sensitive lineage4.9 None
ERR1199132 Sensitive lineage4.6.1.1 None
SRR1196583 Other lineage4.9 None
ERR323063 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR4810624 MDR-TB lineage2.2 None
SRR1175127 Other lineage2.2.1.2 None
ERR2514327 HR-TB lineage4.8 None
SRR28119717 Other lineage4.9;lineage6.3 None
ERR736817 HR-TB lineage4.3.4 None
ERR1063896 Sensitive None
ERR736871 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR294248 MDR-TB lineage2.1;lineage4.9 None
SRR2667443 Sensitive lineage4.9 None
SRR5341313 Sensitive La1.7;lineage4.9;lineage7 None
ERR4872077 Pre-XDR-TB lineage5.2 None
SRR1184298 Pre-XDR-TB lineage4.3.3 None
ERR8665994 Other lineage4.9 None
ERR4820773 HR-TB lineage4.9 None
ERR323108 HR-TB La1.7;lineage4.9 None
ERR323039 HR-TB La2;lineage4.9 None
ERR3797028 HR-TB M.canetti;lineage4.9 None
SRR5341310 Other lineage1.1.2 None
ERR6866410 Sensitive lineage4.9 None
ERR987765 Sensitive lineage4.6.1.1 None
ERR736837 Pre-XDR-TB lineage4.9 None
SRR1165628 Other La3;lineage4.9 None
SRR5341300 HR-TB lineage4.9 None
ERR323045 HR-TB lineage1;lineage4.9 None
ERR926160 Sensitive lineage4.9 None
ERR736839 HR-TB M.canetti;lineage4.9 None
ERR502510 Sensitive lineage4.9 None
ERR2446566 Other lineage4.9 None
SRR1180420 Sensitive lineage4.9 None
SRR7240033 Other La1.2;La1.8.1 None
SRR14801749 HR-TB lineage4.9 None
ERR405219 HR-TB La1.7;lineage3.1;lineage4 None
SRR6045219 HR-TB lineage4.9 None
ERR926158 Sensitive lineage4.9 None
ERR4769474 HR-TB lineage4.9 None
ERR4797184 Sensitive lineage4.9 None
ERR124636 Sensitive lineage4.9 None
ERR216938 HR-TB La1.7;lineage4.9 None
ERR067699 Sensitive La1;lineage2;lineage4.9 None
ERR3283011 Other La3;lineage4.9 None
ERR1063846 HR-TB lineage4.9 None
SRR1196474 Other lineage3.1.1 None
SRR1196546 Other lineage4.9 None
SRR6325447 MDR-TB lineage2.1;lineage4.1.1.1;lineage6.3 None
SRR6789624 HR-TB lineage4.1.1.3 None
ERR926163 Other lineage4.9 None
ERR1023525 HR-TB La1.7;lineage4.9 None
ERR245794 HR-TB lineage4.3.4.2.1 None
SRR1172728 RR-TB La3 None
ERR971389 Sensitive lineage4.9 None
ERR3797064 Other La3;lineage4.9 None
ERR1035122 Sensitive lineage4.9 None
ERR736859 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR702406 Other lineage2.1 None
ERR133825 HR-TB La1;lineage4.9 None
ERR3445501 HR-TB La1.7.1;La1.7.X-unk4;lineage7 None
ERR473332 Other lineage4.9 None
SRR9970978 Sensitive La1;lineage4.1.2 None
SRR1196571 Pre-XDR-TB lineage4.3.3 None
ERR736867 Other lineage2.1;lineage4.9 None
ERR4831117 HR-TB lineage4.9;lineage7 None
ERR1034634 HR-TB lineage4.9 None
ERR323043 Other lineage2.1;lineage4.9 None
SRR29050859 Other lineage4.9 None
SRR1180413 Sensitive lineage4.9 None
ERR736834 Sensitive lineage4.9 None
ERR212125 HR-TB lineage4.9 None
ERR8976043 HR-TB lineage2.1;lineage2.2;lineage6.3 None
SRR5341298 Sensitive lineage4.9 None
SRR1180147 Other lineage2.2.1.1 None
ERR3283057 Sensitive La3;lineage4.9 None
SRR2667437 Sensitive lineage4.9 None
ERR1873393 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4811493 HR-TB lineage4.9 None
SRR20970016 Other lineage2.2 None
ERR3283025 MDR-TB La1.7;lineage4.9 None
ERR9786843 Other None
SRR6325448 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR987722 MDR-TB None
SRR28119752 Other lineage4.9 None
SRR8552928 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR11465024 Other lineage4.1.1.3 None
ERR124652 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR9119483 Pre-XDR-TB lineage5.2 None
ERR926156 Sensitive lineage4.9 None
SRR1180355 Sensitive lineage4.9 None
SRR1180226 HR-TB lineage4.9 None
SRR19295647 Sensitive lineage4.9 None
ERR736835 HR-TB La1.7;M.canetti;lineage4.9 None
SRR1184372 MDR-TB None
SRR5341333 Other lineage2.1;lineage4.9 None
ERR4831545 XDR-TB M.canetti;lineage2.2 None
ERR1063858 HR-TB lineage4.9 None
SRR23961558 Other lineage2.1;lineage4.9;lineage6.3 None
SRR7535082 Sensitive lineage4.9 None
ERR137286 Other lineage4.9 None
ERR6866547 Other La1.7;lineage4.9;lineage6 None
ERR752229 Other lineage4.5 None
SRR3675508 Other lineage2.1;lineage4.9;lineage6.3 None
SRR10808668 Sensitive lineage2.2.1 None
SRR1173568 Sensitive lineage4.9 None
ERR4810741 HR-TB La3;lineage2.1;lineage6.3 None
ERR1035239 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR11252736 Other lineage4.9 None
SRR3742665 HR-TB M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
ERR323058 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR1180345 Other lineage4.9 None
SRR29772570 Other lineage4.9 None
SRR3742657 Pre-XDR-TB La3;M.canetti;lineage2.2.1 None
SRR1180375 Sensitive lineage4.9 None
SRR1180391 Sensitive lineage4.9 None
ERR502511 Sensitive lineage4.9 None
SRR1184388 Other lineage2.1;lineage4.9 None
SRR1180444 Sensitive lineage4.9 None
ERR1063839 MDR-TB La2;lineage2.2 None
ERR4811022 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR1180946 Sensitive lineage2;lineage4.9 None
ERR323034 MDR-TB La3;M.canetti;lineage2.1;lineage3.1 None
ERR9119669 HR-TB lineage4.9 None
SRR5535933 Other lineage4.9 None
SRR19303884 Other lineage2.1;lineage6.3 None
ERR124651 MDR-TB La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
SRR9970980 HR-TB lineage4.1.2 None
SRR20969708 HR-TB lineage2.2 None
SRR6046299 Other lineage4.3.1;lineage4.9;lineage6 None
ERR124642 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
ERR702405 Sensitive lineage4.9 None
SRR1181237 Sensitive lineage2.2.1;lineage4 None
SRR20969731 Other lineage2.2.1 None
ERR323107 Sensitive lineage4.9 None
ERR323040 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR323115 Sensitive lineage4.9 None
ERR1063857 MDR-TB La2;lineage4.9 None
SRR6045526 Other lineage4.9 None
SRR1175487 Sensitive lineage4.9 None
ERR3283014 Sensitive La3;lineage4.9 None
SRR5341330 Other lineage4.9 None
SRR16156817 Other lineage4.9 None
SRR28119811 Other lineage2.2.1;lineage6.3 None
ERR323064 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR4799478 Pre-XDR-TB lineage2.2.1 None
ERR3445503 Other La1.7.1;La1.7.X-unk4 None
SRR5341470 MDR-TB lineage4.9;lineage9 None
ERR3797036 HR-TB lineage2.1;lineage4.1.4;lineage4.9 None
SRR5341461 HR-TB lineage4.9 None
SRR9970981 RR-TB lineage4.3.2.1 None
SRR1184380 Other lineage2.1;lineage4.9 None
SRR10808805 Other La1;lineage4.9 None
SRR6458423 HR-TB lineage2.2.1 None
SRR6511621 Sensitive lineage4.9 None
SRR3675524 Other lineage4.9;lineage6.3 None
ERR278594 HR-TB lineage2.1;lineage4.9 None
ERR2229143 RR-TB lineage4.9 None
ERR176779 HR-TB lineage4.9 None
ERR4811311 Other lineage2.1;lineage4.9;lineage6.3 None
SRR1180319 Sensitive lineage4.9 None
SRR7535086 Other None
ERR926159 Sensitive lineage4.9 None
SRR1165699 Other lineage4.9 None
ERR108471 HR-TB lineage4.9 None
ERR11465025 Other lineage4.1.1.3 None
ERR926154 Sensitive lineage4.9 None
SRR28119777 Other lineage4.9 None
SRR12416842 HR-TB lineage4.9 None
ERR926164 Other lineage4.9 None
ERR1063849 HR-TB lineage4.9 None
SRR1172817 Other La3 None
ERR323056 HR-TB lineage4.4.1.2 None
SRR3675581 Other lineage2.1;lineage4.9 None
ERR4797193 HR-TB lineage1.1.2 None
SRR1172796 Sensitive lineage2.2.1.2 None
ERR3797046 HR-TB lineage4.9 None
SRR5341302 Other La3;lineage2.1;lineage4.9 None
ERR502532 Other M.canetti;lineage2.1;lineage6.3 None
SRR5341467 Other lineage4.9 None
SRR11972367 Sensitive lineage2.2.1 None
SRR1183111 HR-TB lineage4.9 None
SRR6045785 MDR-TB lineage4.2;lineage4.8.1;lineage4.9 None
SRR23961559 Other La1.7;lineage4.2 None
SRR3675311 Other lineage4.9 None
SRR1184294 Other lineage4.9 None
SRR1181390 Sensitive lineage2.2.1;lineage4.9 None
ERR323033 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR4798262 HR-TB La1.2.BCG None
ERR323054 MDR-TB La3;M.canetti;lineage3.1 None
ERR386953 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR11252558 Other lineage4.6.3;lineage4.9 None
SRR12416824 HR-TB lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
ERR11252612 Other La3;lineage4.9 None
SRR5341387 Other lineage4.9 None
SRR25827682 Other None
SRR6325442 HR-TB lineage2.1;lineage4.1.1.1;lineage6.3 None
ERR234659 Other None
ERR126600 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR181824 HR-TB lineage4.9 None
SRR28119756 Other lineage4.9;lineage6.3 None
ERR7911670 XDR-TB M.canetti;lineage2.2 None
ERR4819422 HR-TB lineage4.9 None
ERR736875 HR-TB lineage4.9 None
ERR736865 HR-TB lineage4.3.2;lineage4.9 None
ERR926165 Sensitive lineage4.9 None
SRR1165667 Other lineage4.9;lineage6.3 None
ERR3445504 Other lineage4.9;lineage6.1.3 None
ERR926157 Sensitive lineage4.9 None
SRR2667440 Sensitive lineage4.9 None
SRR1158918 Sensitive lineage4.9 None
SRR1172951 Other lineage4.9 None
SRR1180137 Other lineage2.2.1 None
SRR1181325 Sensitive lineage4.9 None
SRR1173778 Other lineage4.9 None
SRR1196768 MDR-TB None
SRR3675571 HR-TB M.canetti;lineage4.2;lineage4.9 None
ERR736872 HR-TB lineage4.9 None
SRR1181215 Sensitive lineage4.4.1.1.1 None
ERR176568 HR-TB La3;lineage2.1;lineage4.9 None
SRR20969677 HR-TB La3;lineage2 None
SRR1180300 Sensitive lineage4.9 None
ERR4811075 Other lineage2.1;lineage4.9;lineage6.3 None
ERR736874 Other La3;lineage2.1;lineage4.9 None
SRR1173629 Other lineage2.1;lineage4.9 None
SRR1792478 HR-TB La1.7.1 None
ERR4811142 RR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
ERR126608 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR926162 Sensitive lineage4.9 None
ERR736863 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR6325445 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR736848 Other lineage4.9 None
SRR1184021 Sensitive lineage4.9 None
ERR13245558 MDR-TB La3;lineage2.2.2 None
ERR4811105 HR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
ERR1873396 Pre-XDR-TB M.canetti;lineage2.2 None
ERR736856 Sensitive lineage4.9 None
ERR1035157 Other lineage4.9 None
ERR181887 Other lineage4.9 None
SRR5341384 HR-TB lineage4.9 None
SRR1174897 MDR-TB lineage4.9;lineage9 None
ERR4769521 RR-TB lineage4.9 None
SRR6789626 Other None
ERR3797063 Sensitive La3;lineage4.9 None
ERR926161 Sensitive lineage4.9 None
ERR4815441 HR-TB lineage4.9 None
ERR1063862 HR-TB lineage4.9 None
ERR176793 Other lineage4.1.1.1 None
ERR751326 Other lineage4.9 None
ERR323053 MDR-TB La2;lineage4.9;lineage9 None
ERR1063859 HR-TB La1.7.1;lineage4.9 None
SRR1180977 Sensitive lineage4.9 None
ERR990545 Other lineage3 None
SRR1181349 Sensitive lineage4 None
ERR11049020 Other lineage4.8 None
ERR126618 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR4817731 HR-TB lineage4.9 None
SRR6325444 MDR-TB M.canetti;lineage2.1;lineage6.3 None
SRR5341453 Other lineage4.9 None
ERR8479578 Sensitive lineage1.1.3.1 None
SRR1180172 Other lineage2.2.1 None
SRR1172234 Other lineage4.9 None
SRR5341308 Sensitive lineage4.9 None
ERR13265748 Other lineage4.9;lineage6.3 None
ERR702404 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR1180399 Sensitive lineage4.9 None
ERR4769452 Other lineage4.9 None
SRR6044835 Other lineage4.9 None
ERR779852 Sensitive lineage4.9 None
SRR2667439 Sensitive lineage4.9 None
SRR1181351 Sensitive lineage4.9 None
SRR1183144 Other lineage2.2.1 None
SRR5341299 HR-TB lineage4.9 None
ERR3797014 Other La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR5341456 Other lineage4.9 None
SRR1180996 Sensitive lineage4.9 None
SRR1184381 MDR-TB None
SRR28119805 Other lineage4.9 None
ERR9786671 Other None
ERR176778 HR-TB lineage4.9 None
SRR1181289 Other lineage2.2.1 None
SRR6046397 Other M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
SRR1180312 Sensitive lineage4.9 None
ERR9786604 Other None
SRR1167384 Other La3;lineage4.9 None