lineage | Count |
---|---|
lineage4 | 96 |
139 | |
lineage4.1.2 | 1 |
lineage2.2.1 | 10 |
lineage4.8.1 | 1 |
lineage4.4.1.2 | 1 |
lineage4.9 | 65 |
lineage4;lineage3.1 | 1 |
La1.2 | 1 |
lineage2 | 3 |
lineage1.1.3.1 | 1 |
lineage4.3.2 | 1 |
lineage4.3.4.2.1 | 1 |
La3 | 1 |
lineage2.2.1.1 | 1 |
lineage4.9;lineage2.2 | 1 |
lineage2.2 | 5 |
lineage4.4.1.1.1 | 1 |
lineage4.3.3 | 1 |
lineage3.1 | 2 |
lineage4.5 | 1 |
lineage4.9;La3 | 1 |
lineage6.3;lineage4.9;lineage2.1 | 1 |
lineage6.3;lineage2.2.1 | 1 |
lineage4.1 | 2 |
lineage4.1.1 | 1 |
lineage4.9;lineage4.8.1;lineage4.1.1 | 1 |
lineage2.1 | 1 |
lineage4.3 | 1 |
lineage4;lineage2 | 1 |
lineage4.8 | 3 |
lineage4.8;La3 | 1 |
lineage4.1.1.2 | 1 |
lineage3 | 1 |
lineage1.1.2 | 1 |
lineage4.1.2.1 | 1 |
lineage4.9;lineage2.1 | 1 |
lineage4.2.1 | 1 |
lineage4.1.1.3 | 1 |
spoligotype | Count |
---|---|
None | 355 |
ID | Drug resistance | Lineage | Country iso2 | ERR502510 | Sensitive | lineage4 | None | ERR5311099 | HR-TB | None | ERR502532 | HR-TB | None | SRR9970978 | Sensitive | lineage4.1.2 | None | ERR5311081 | HR-TB | None | SRR9971270 | RR-TB | lineage2.2.1 | None | SRR7496471 | Sensitive | None | ERR5311090 | HR-TB | None | SRR9971150 | RR-TB | lineage4.8.1 | None | SRR7535082 | Sensitive | lineage4 | None | SRR7535086 | Other | None | ERR323041 | HR-TB | None | ERR323066 | Sensitive | lineage4 | None | ERR323043 | HR-TB | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR1034652 | Other | None | ERR323085 | Sensitive | lineage4 | None | ERR067699 | HR-TB | lineage4 | None | ERR067712 | HR-TB | lineage4 | None | ERR1034634 | HR-TB | None | ERR323108 | HR-TB | lineage4 | None | ERR323107 | Other | lineage4 | None | ERR1063855 | Other | lineage4 | None | ERR1035122 | Sensitive | None | ERR1035157 | Other | lineage4.9 | None | ERR1063857 | HR-TB | None | ERR1063896 | Sensitive | None | ERR137286 | Sensitive | lineage4 | None | ERR108471 | HR-TB | lineage4 | None | ERR133825 | Sensitive | lineage4 | None | ERR3283025 | HR-TB | None | ERR3283021 | HR-TB | None | ERR3283014 | HR-TB | None | ERR3283032 | HR-TB | None | ERR3283027 | HR-TB | None | ERR3283024 | Other | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3283031 | HR-TB | None | ERR3283040 | HR-TB | None | ERR3283036 | HR-TB | None | ERR3283047 | HR-TB | None | ERR3283057 | HR-TB | lineage4 | None | ERR349264 | Sensitive | lineage4 | None | ERR3445501 | HR-TB | None | ERR3445502 | HR-TB | lineage4 | None | ERR3445504 | HR-TB | None | ERR3468544 | HR-TB | None | ERR349298 | Sensitive | lineage4 | None | ERR349265 | Sensitive | lineage4 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR349330 | Sensitive | lineage4 | None | ERR349299 | Sensitive | lineage4 | None | ERR349296 | Sensitive | lineage4 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR363426 | Sensitive | lineage4 | None | ERR363421 | Sensitive | lineage4 | None | ERR363445 | Sensitive | lineage4 | None | ERR363437 | Sensitive | lineage4 | None | ERR363446 | Sensitive | lineage4 | None | ERR363456 | Sensitive | lineage4 | None | ERR363449 | Sensitive | lineage4 | None | ERR363453 | Sensitive | lineage4 | None | ERR363447 | Sensitive | lineage4 | None | ERR363499 | Sensitive | lineage4 | None | ERR363474 | Sensitive | lineage4 | None | ERR363479 | Sensitive | lineage4 | None | ERR363498 | Sensitive | lineage4 | None | ERR363500 | Sensitive | lineage4 | None | ERR363490 | Sensitive | lineage4 | None | ERR363502 | Sensitive | lineage4 | None | ERR363509 | Sensitive | lineage4 | None | ERR363506 | Sensitive | lineage4 | None | ERR369151 | Sensitive | lineage4.9 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR369159 | Sensitive | lineage4 | None | ERR369158 | Sensitive | lineage4 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR373945 | HR-TB | lineage4 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR369162 | Sensitive | lineage4 | None | ERR369163 | Sensitive | lineage4 | None | ERR3797069 | Other | None | ERR373947 | Sensitive | lineage4 | None | ERR3797014 | Other | None | ERR3797044 | Other | None | ERR3797048 | HR-TB | None | ERR3797061 | Other | None | ERR373946 | Sensitive | lineage4 | None | ERR3797016 | HR-TB | None | ERR3797015 | HR-TB | None | ERR3797017 | Other | None | ERR3797036 | HR-TB | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3797063 | HR-TB | None | ERR3797081 | Sensitive | lineage4 | None | ERR3797079 | Sensitive | lineage4 | None | ERR3797064 | Sensitive | None | ERR3797087 | Sensitive | lineage4 | None | ERR3797083 | HR-TB | None | ERR3797086 | Other | lineage4.9 | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR405209 | Sensitive | lineage4 | None | ERR4188350 | HR-TB | None | ERR4178226 | Sensitive | lineage4 | None | ERR4596910 | Sensitive | lineage4 | None | ERR4407463 | HR-TB | None | ERR4798431 | HR-TB | None | ERR473334 | HR-TB | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4769497 | HR-TB | La1.2 | None | ERR4769521 | HR-TB | None | ERR4796254 | Sensitive | lineage4 | None | ERR4796929 | Sensitive | lineage4 | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4797264 | Sensitive | None | ERR473323 | HR-TB | lineage4.9 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR4769457 | Other | lineage4.9 | None | ERR4769474 | HR-TB | lineage4 | None | ERR4798823 | HR-TB | lineage4 | None | ERR4811105 | HR-TB | None | ERR4810741 | HR-TB | None | ERR4811022 | HR-TB | None | ERR6359045 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR6865502 | Sensitive | lineage4 | None | ERR6359066 | HR-TB | lineage4 | None | ERR736848 | HR-TB | None | ERR6866410 | Sensitive | None | ERR6866547 | Sensitive | lineage4 | None | ERR702404 | HR-TB | None | ERR702406 | HR-TB | None | ERR736831 | HR-TB | lineage4.9 | None | ERR736834 | Sensitive | lineage4 | None | ERR736839 | Other | None | ERR736872 | Sensitive | lineage4 | None | ERR736856 | HR-TB | lineage4 | None | ERR736867 | HR-TB | None | ERR736874 | HR-TB | None | ERR751326 | Sensitive | lineage4 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR9119669 | HR-TB | None | ERR176549 | Other | lineage4.3.4.2.1 | None | ERR8976043 | HR-TB | None | SRR10808399 | Sensitive | lineage4 | None | ERR9786843 | Other | None | SRR10808805 | Sensitive | None | SRR10809074 | Sensitive | lineage4 | None | SRR1169249 | Other | La3 | None | SRR1158918 | Sensitive | lineage4 | None | SRR1167384 | Other | lineage4 | None | SRR1169194 | Other | None | SRR1172728 | MDR-TB | None | SRR1169306 | Other | None | SRR1172234 | Other | None | SRR1172717 | Other | lineage4.9 | None | SRR1172857 | MDR-TB | None | SRR1172807 | Sensitive | lineage4.9 | None | SRR1172817 | HR-TB | None | SRR1173166 | Other | lineage4.9 | None | SRR1172951 | Other | None | SRR1173153 | HR-TB | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR1173118 | Other | None | SRR1173363 | HR-TB | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR1173384 | Other | lineage4 | None | SRR1173400 | Other | None | SRR1173562 | HR-TB | lineage4 | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173706 | Other | lineage4.9 | None | SRR1173778 | Other | None | SRR1173484 | Other | lineage4 | None | SRR1173629 | Other | None | SRR1173788 | Other | None | SRR1175049 | RR-TB | None | SRR1175074 | MDR-TB | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1175090 | Other | lineage4.9 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9;lineage2.2 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1180446 | Other | lineage4.9 | None | SRR1180996 | HR-TB | lineage4 | None | SRR1181214 | Other | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR1181349 | Sensitive | lineage4.4.1.1.1 | None | SRR1181289 | Other | lineage2.2.1 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1181368 | Other | lineage4.9 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1183049 | Other | lineage2.2 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR1181390 | Sensitive | lineage2 | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR1184294 | HR-TB | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1196494 | MDR-TB | None | SRR1184381 | MDR-TB | None | SRR1184380 | HR-TB | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1184388 | Other | None | SRR1196566 | HR-TB | None | SRR1196546 | HR-TB | None | SRR1196768 | MDR-TB | None | SRR1196677 | HR-TB | lineage2 | None | SRR12142341 | HR-TB | None | SRR11972367 | Sensitive | lineage2.2.1 | None | SRR14801749 | Sensitive | None | SRR12416824 | HR-TB | None | SRR18910194 | HR-TB | lineage2.2 | None | SRR15368973 | Other | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR26399973 | Other | lineage4.9;La3 | None | SRR8692825 | Other | lineage4.9 | None | SRR19303884 | HR-TB | None | SRR19304036 | HR-TB | None | SRR23961558 | Other | lineage6.3;lineage4.9;lineage2.1 | None | SRR3675465 | HR-TB | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | SRR3675464 | HR-TB | lineage4.1 | None | ERR176793 | Other | lineage4.1.1 | None | ERR4815604 | HR-TB | None | ERR1035239 | HR-TB | None | ERR779852 | Sensitive | lineage4.9;lineage4.8.1;lineage4.1.1 | None | ERR4814352 | HR-TB | lineage2.2.1 | None | SRR3675501 | HR-TB | None | SRR3675488 | HR-TB | None | SRR3675221 | HR-TB | None | ERR4814639 | HR-TB | lineage4 | None | SRR3675236 | HR-TB | None | SRR3675234 | Other | None | ERR702405 | Sensitive | lineage2.1 | None | SRR3675246 | Sensitive | lineage4 | None | SRR3675558 | HR-TB | None | SRR3675265 | Other | lineage4 | None | ERR176643 | HR-TB | None | ERR4817060 | RR-TB | None | ERR176568 | Other | lineage4.3 | None | ERR4816999 | Other | None | ERR2027263 | Other | lineage4 | None | ERR212033 | HR-TB | None | ERR4816466 | HR-TB | None | ERR212138 | HR-TB | lineage4 | None | SRR3675571 | HR-TB | None | ERR4816656 | HR-TB | None | ERR216965 | HR-TB | lineage4.9 | None | SRR3742665 | HR-TB | None | SRR5341384 | Sensitive | lineage4.9 | None | ERR4816585 | Other | lineage2.2 | None | ERR4815815 | Sensitive | lineage4 | None | ERR4816762 | Other | lineage4;lineage2 | None | ERR2228818 | Sensitive | lineage4.8 | None | ERR234659 | HR-TB | None | ERR4817893 | Other | lineage4.8;La3 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR4817735 | Other | lineage4.8 | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR4818929 | HR-TB | None | ERR4818561 | HR-TB | lineage4 | None | SRR5341425 | Other | lineage4 | None | ERR4818615 | Other | None | SRR5341387 | Other | lineage4 | None | SRR5341455 | Sensitive | lineage4 | None | ERR4819546 | HR-TB | lineage3 | None | SRR5341298 | Sensitive | lineage4 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR5341300 | Other | lineage4 | None | SRR5341299 | Sensitive | lineage4 | None | SRR5341303 | RR-TB | lineage4 | None | SRR5341308 | Sensitive | lineage4 | None | SRR5341302 | HR-TB | None | SRR5341333 | HR-TB | None | SRR5341310 | Other | lineage1.1.2 | None | SRR5341461 | Sensitive | lineage4 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341366 | Sensitive | lineage4 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR4820185 | Sensitive | lineage4.9 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341467 | Other | lineage4 | None | ERR502511 | Sensitive | lineage4.9;lineage2.1 | None | ERR2693231 | Other | None | SRR5341469 | Other | lineage4 | None | ERR2693230 | Other | None | ERR2693254 | Other | None | SRR6045503 | HR-TB | None | SRR6045526 | HR-TB | None | ERR2693257 | Other | None | SRR6045519 | HR-TB | None | SRR6045706 | Sensitive | lineage4 | None | SRR6045555 | HR-TB | None | ERR4821655 | Sensitive | lineage4 | None | SRR6046141 | Other | lineage4.9 | None | SRR5535933 | HR-TB | None | SRR6046133 | HR-TB | None | SRR6044790 | HR-TB | None | SRR6045832 | HR-TB | lineage4.9 | None | SRR6045795 | HR-TB | lineage2.2.1 | None | ERR2693232 | Other | lineage4.9 | None | SRR6045892 | Sensitive | None | SRR6044876 | Sensitive | lineage4 | None | SRR6044835 | Sensitive | lineage4 | None | SRR6044875 | HR-TB | lineage4.9 | None | SRR6044855 | Other | lineage4.9 | None | SRR6044890 | Other | lineage4.9 | None | SRR6045952 | HR-TB | None | SRR6046066 | HR-TB | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR6045359 | Sensitive | lineage4.9 | None | SRR6045327 | HR-TB | None | SRR6045371 | Sensitive | lineage4.2.1 | None | SRR6046594 | HR-TB | lineage4 | None | SRR6046362 | HR-TB | None | SRR6046385 | Other | lineage4.9 | None | SRR6046460 | HR-TB | None | SRR6046540 | HR-TB | None | SRR6046225 | HR-TB | None | SRR6046397 | Other | None | ERR4830353 | Other | None | SRR6046482 | HR-TB | None | SRR6046514 | HR-TB | None | ERR4831117 | HR-TB | None | SRR6046644 | HR-TB | None | SRR6511621 | HR-TB | None | ERR323037 | HR-TB | lineage4 | None | ERR485006 | HR-TB | lineage4.9 | None | SRR6046611 | HR-TB | lineage4.9 | None | SRR6046897 | Sensitive | lineage4 | None | SRR6789626 | Other | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR294248 | HR-TB | None | SRR6789624 | MDR-TB | lineage4.1 | None | ERR11465665 | Other | lineage4.1.1.3 | None |
---|