Rv3596c - c.1935C>T


Drug resistance types
44 Sensitive 5 RR-TB 92 HR-TB 23 MDR-TB 6 Pre-XDR-TB 1 XDR-TB 194 Other
lineage Counts
lineage Count
lineage4.9 148
La1.7;lineage4.9;lineage7 3
lineage4.3.3 5
lineage4 5
lineage4.8 7
lineage2.2.1 22
M.canetti;lineage2.1;lineage4.9 2
lineage4.1.2.1 17
lineage4.3.4.1 1
lineage2.1;lineage4.9 14
La3;lineage2 1
lineage1.2.2.2 1
La3;lineage2.1;lineage4.9 2
lineage3 4
lineage4.3.4.2 1
lineage4.6.2.2 2
La3;lineage2.1;lineage4.9;lineage6.3 4
lineage6.1.3 1
La1.7;lineage3;lineage4.9;lineage7 1
lineage2.1;lineage4.9;lineage6.3 10
lineage4.1;lineage4.9 1
lineage4.8;lineage4.9 2
La1.2.BCG 1
lineage4.7 2
lineage4.1.1.1 3
26
lineage4.9;lineage6.3 5
La3;lineage2.1;lineage6.3 1
lineage3.1.3 1
lineage1.1.2 2
La3;lineage4.9 1
lineage2.1;lineage6.3 2
lineage4.1.2 2
La3;M.canetti;lineage4.9 1
La1.8.1 4
lineage2.1 5
La1;lineage2;lineage4.9 1
La1.2.BCG;La1.8.1 1
lineage4.6.1.1 1
M.canetti;lineage4.9 2
lineage4.2.2.2 1
lineage3.1 1
lineage4.5 2
lineage2.1;lineage4.3.2;lineage4.9 1
lineage4.3.2.1 1
lineage4.1.1.3 3
lineage2.2 1
lineage4.3.2 1
La1.7.1;lineage4.9 1
La1;lineage4.9 2
lineage4.3.1;lineage4.9;lineage6 1
lineage4.1.3 2
La3 2
La3;lineage2.2.1 1
lineage4.6.3;lineage4.9;lineage6.3 1
lineage5.1.4 1
lineage1.1.3.1 1
lineage4.1.1.3;lineage4.9 2
lineage4.2.1.1;lineage4.3.3 1
La3;lineage4.8 1
lineage6.3.1 1
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
lineage2.2.1;lineage4 1
lineage1.1.1 1
lineage4.4.1.1 2
lineage3.1.1 1
lineage4.2.1 2
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 1
lineage4.1 1
M.canetti;lineage2.1;lineage6.3 1
lineage1.1.1;lineage4 1
lineage4.3.4.2.1 2
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
La3;M.canetti;lineage2.2.1 1
La3;lineage1.1.2 1
lineage2.2.1;lineage3 1
lineage2.2.1;lineage6.3 1
lineage4.9;lineage6.1.3 1
lineage1;lineage4.9 1
lineage4.9;lineage7 1
spoligotype Counts
spoligotype Count
None 365
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR4796254 Other lineage4.9 None
SRR1196566 Other lineage4.9 None
SRR5341432 Other La1.7;lineage4.9;lineage7 None
SRR1184298 Pre-XDR-TB lineage4.3.3 None
ERR4817731 HR-TB lineage4.9 None
ERR4816478 HR-TB lineage4 None
ERR11466174 Other lineage4.8 None
SRR9971112 HR-TB lineage2.2.1 None
SRR12708409 HR-TB lineage4.3.3 None
SRR5341453 Other lineage4.9 None
ERR4814352 Other lineage2.2.1 None
ERR736859 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR6044875 Other lineage4.9 None
ERR11049020 Other lineage4.8 None
SRR12708372 Sensitive lineage4.9 None
ERR4816656 Other lineage4.9 None
ERR4819781 Other lineage2.2.1 None
ERR3797047 MDR-TB lineage4.9 None
SRR3675246 Other lineage4.9 None
ERR9786694 Other lineage4.1.2.1 None
ERR11466499 Other lineage4.3.4.1 None
ERR736867 Other lineage2.1;lineage4.9 None
SRR20969677 HR-TB La3;lineage2 None
SRR5341455 Sensitive lineage4.9 None
ERR4797184 HR-TB lineage4.9 None
ERR3797046 HR-TB lineage4.9 None
ERR11081258 Other lineage4.8 None
SRR1158918 Other lineage4.9 None
ERR4797201 Other lineage1.2.2.2 None
ERR369156 Sensitive lineage4.9 None
SRR3675247 Other lineage4.9 None
SRR5341302 Other La3;lineage2.1;lineage4.9 None
ERR2229542 Other lineage4.8 None
ERR4797588 MDR-TB lineage3 None
ERR11641184 Pre-XDR-TB lineage4.3.4.2 None
ERR4819809 HR-TB lineage4.6.2.2 None
SRR3675517 Other La3;lineage2.1;lineage4.9;lineage6.3 None
ERR9787165 Other lineage6.1.3 None
SRR5341315 Other La1.7;lineage3;lineage4.9;lineage7 None
ERR9786601 Other lineage4.1.2.1 None
SRR3675490 Other lineage2.1;lineage4.9;lineage6.3 None
SRR3675508 MDR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR12708374 Sensitive lineage4.1;lineage4.9 None
ERR736834 HR-TB lineage4.9 None
ERR6866022 HR-TB lineage4.8;lineage4.9 None
SRR5341299 HR-TB lineage4.9 None
ERR926155 Other lineage4.9 None
SRR1915487 Other La1.2.BCG None
ERR9786645 Other lineage4.6.2.2 None
SRR7496523 Other lineage4.7 None
ERR9786617 Other lineage4.1.1.1 None
ERR9786642 Other lineage4.1.2.1 None
SRR3675572 Other None
ERR4818615 Sensitive None
ERR9786671 Other None
SRR28119717 Other lineage4.9;lineage6.3 None
SRR1184372 MDR-TB None
ERR4796577 HR-TB None
SRR7535086 Other None
SRR28044634 Other lineage3 None
ERR2514692 Other None
SRR1196768 MDR-TB None
ERR4817060 Other None
ERR6358979 HR-TB lineage4.9 None
ERR4810741 HR-TB La3;lineage2.1;lineage6.3 None
SRR3675275 Other lineage4.9 None
ERR2513121 Sensitive lineage3.1.3 None
SRR25827687 MDR-TB lineage1.1.2 None
SRR5341330 Other lineage4.9 None
SRR1184388 Other lineage2.1;lineage4.9 None
ERR2514821 Other lineage2.2.1 None
ERR3797069 Other lineage4.9 None
SRR18003019 Other lineage2.2.1 None
SRR26399973 Other La3;lineage4.9 None
ERR4819932 Other lineage4.7 None
SRR19303884 Other lineage2.1;lineage6.3 None
SRR9970980 HR-TB lineage4.1.2 None
ERR473277 HR-TB La3;M.canetti;lineage4.9 None
SRR1791747 Other La1.8.1 None
ERR4820773 HR-TB lineage4.9 None
ERR4817667 HR-TB lineage4.8 None
ERR4821686 Sensitive lineage4.1.2.1 None
ERR4769433 RR-TB lineage4.9 None
ERR702406 Other lineage2.1 None
SRR5341341 Pre-XDR-TB lineage2.2.1 None
ERR4831617 MDR-TB lineage2.2.1 None
ERR926154 Sensitive lineage4.9 None
SRR6046564 Sensitive lineage4.9 None
ERR926157 Other lineage4.9 None
SRR6046245 Other lineage4.9 None
SRR6045548 Other lineage4.9 None
SRR26399239 Sensitive lineage4.9 None
ERR067699 HR-TB La1;lineage2;lineage4.9 None
SRR3675465 Other lineage4.9;lineage6.3 None
ERR4818021 Other La1.2.BCG;La1.8.1 None
ERR6358755 Other lineage4.6.1.1 None
SRR5341345 Sensitive lineage4.9 None
ERR4811311 Other lineage2.1;lineage4.9;lineage6.3 None
SRR12142341 HR-TB lineage2.1 None
ERR736839 HR-TB M.canetti;lineage4.9 None
SRR14782054 Other lineage4.9 None
SRR1173778 Other lineage4.9 None
SRR3675232 Other lineage4.1.2.1 None
SRR6046066 Other lineage4.9 None
SRR3675216 Other lineage2.1;lineage4.9 None
SRR16156817 Other lineage4.9 None
ERR502912 Other lineage2.2.1 None
SRR7236177 Other La1.8.1 None
ERR2513470 Other lineage4.2.2.2 None
SRR3675548 Sensitive lineage4.9 None
SRR6789621 Other lineage4.9 None
ERR926158 Sensitive lineage4.9 None
SRR22424787 Sensitive lineage4.9 None
SRR1184346 HR-TB lineage3.1 None
SRR1173400 Other lineage4.9 None
ERR4811031 Other lineage4.5 None
SRR6045327 Other lineage2.1;lineage4.3.2;lineage4.9 None
ERR4811142 RR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
ERR400336 Sensitive lineage4.9 None
SRR7496471 Sensitive lineage4 None
ERR4811030 Other lineage4.9 None
SRR5341461 HR-TB lineage4.9 None
SRR9970981 RR-TB lineage4.3.2.1 None
ERR400326 Other lineage4.9 None
SRR6789624 HR-TB lineage4.1.1.3 None
ERR4815441 HR-TB lineage4.9 None
ERR323062 HR-TB lineage4.9 None
ERR4799513 HR-TB lineage2.2 None
SRR3675235 HR-TB lineage4.9 None
SRR6046540 Other lineage2.1;lineage4.9 None
ERR9117805 Other lineage4.3.2 None
ERR12268442 Other lineage4.1.2.1 None
SRR1172951 Other lineage4.9 None
ERR926159 Sensitive lineage4.9 None
ERR9786421 Other lineage4.1.2.1 None
SRR1165699 Other lineage4.9 None
ERR4819877 HR-TB lineage4.9 None
ERR1063859 HR-TB La1.7.1;lineage4.9 None
SRR21690574 Other lineage4.1.2.1 None
SRR3675387 Other lineage4.9 None
SRR12416842 HR-TB lineage4.9 None
ERR3804155 Other lineage4.1.2.1 None
ERR133825 HR-TB La1;lineage4.9 None
ERR3283036 Other lineage2.1;lineage4.9 None
SRR6046299 Other lineage4.3.1;lineage4.9;lineage6 None
ERR9786611 HR-TB lineage4.1.3 None
SRR3675457 Other lineage4.9 None
SRR1172234 Other lineage4.9 None
SRR6458423 HR-TB lineage2.2.1 None
SRR6044819 Sensitive lineage4.9 None
SRR1196546 Other lineage4.9 None
SRR12416840 MDR-TB lineage4.9 None
SRR3416776 Other lineage2.1 None
SRR5341467 Other lineage4.9 None
SRR6044835 Other lineage4.9 None
SRR1172817 Other La3 None
SRR26937071 MDR-TB La3;lineage2.2.1 None
SRR6045191 Sensitive lineage4.9 None
ERR11465024 Other lineage4.1.1.3 None
SRR6045892 Sensitive lineage4.9 None
SRR3675574 Other lineage4.6.3;lineage4.9;lineage6.3 None
ERR4819241 Other lineage4.9 None
ERR6359082 Other lineage4.9 None
SRR2010299 MDR-TB lineage2.2.1 None
ERR3283021 MDR-TB lineage4.9 None
SRR1165667 Other lineage4.9;lineage6.3 None
ERR2513283 Sensitive lineage5.1.4 None
SRR7131023 Other lineage4.1.2.1 None
SRR19304036 Other La3;lineage2.1;lineage4.9;lineage6.3 None
ERR9786682 Other lineage4.1.2.1 None
SRR5341469 HR-TB lineage4.9 None
ERR926161 Sensitive lineage4.9 None
ERR4831620 MDR-TB lineage2.2.1 None
ERR971389 Other lineage4.9 None
ERR8479578 HR-TB lineage1.1.3.1 None
SRR28119756 Other lineage4.9;lineage6.3 None
SRR1184381 MDR-TB None
ERR9786604 Other None
ERR4815604 Other None
SRR6789626 Other None
SRR28351488 MDR-TB lineage2.2.1 None
SRR18213713 HR-TB None
ERR4816999 Other None
SRR28119777 Other lineage4.9 None
SRR6045795 Other lineage2.2.1 None
ERR137286 Other lineage4.9 None
ERR3797029 Other lineage4.9 None
SRR1175500 Sensitive lineage4.1.1.3;lineage4.9 None
ERR4797474 Other lineage4.9 None
ERR6359074 HR-TB lineage4.9 None
ERR4769497 Other La1;lineage4.9 None
ERR4797264 HR-TB lineage4.9 None
ERR736872 HR-TB lineage4.9 None
ERR779852 HR-TB lineage4.9 None
ERR4800341 HR-TB lineage3 None
ERR867542 HR-TB lineage4.2.1.1;lineage4.3.3 None
SRR1184380 Other lineage2.1;lineage4.9 None
ERR4817893 Other La3;lineage4.8 None
SRR3675549 Other lineage4.9 None
ERR4024991 HR-TB lineage4.8;lineage4.9 None
ERR9787139 Other lineage6.3.1 None
ERR6359070 Sensitive lineage4.9 None
ERR4798099 HR-TB lineage4.9 None
SRR1710057 Other lineage2.1 None
ERR369151 Other lineage4.9 None
ERR4811075 Other lineage2.1;lineage4.9;lineage6.3 None
ERR702405 HR-TB lineage4.9 None
ERR736874 Other La3;lineage2.1;lineage4.9 None
SRR12416824 HR-TB lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
ERR502943 Sensitive lineage2.2.1;lineage4 None
ERR11465025 Other lineage4.1.1.3 None
SRR11462861 Other La1.8.1 None
ERR3283055 HR-TB lineage4.9 None
ERR4817896 HR-TB lineage2.2.1 None
SRR1169194 Other lineage4.9 None
ERR6866639 HR-TB lineage4.9 None
ERR926156 Other lineage4.9 None
SRR6045242 Other lineage2.1;lineage4.9 None
SRR1173218 Other lineage4.3.3 None
SRR3675455 Sensitive lineage4.9 None
SRR3675473 Sensitive lineage4.9 None
ERR4819314 HR-TB lineage1.1.1 None
SRR3675214 Other lineage4.9 None
ERR3283044 Other lineage4 None
SRR5341313 Other La1.7;lineage4.9;lineage7 None
ERR4799025 Other lineage4.8 None
ERR323115 Sensitive lineage4.9 None
SRR1184312 Other lineage2.2.1 None
ERR4811105 HR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
SRR15368973 Other lineage4.9 None
SRR5341333 HR-TB lineage2.1;lineage4.9 None
SRR5341384 HR-TB lineage4.9 None
ERR2027263 Other lineage4 None
ERR4816559 MDR-TB lineage4.4.1.1 None
ERR3804169 HR-TB lineage4.1.3 None
ERR124636 HR-TB lineage4.9 None
ERR4799478 Pre-XDR-TB lineage2.2.1 None
ERR926160 Other lineage4.9 None
SRR10315567 HR-TB lineage2.2.1 None
SRR3675248 Other lineage4.9 None
SRR7496472 Other lineage4.9 None
SRR6046521 Other lineage4.4.1.1 None
SRR1196474 Other lineage3.1.1 None
ERR1035122 HR-TB lineage4.9 None
ERR176793 Other lineage4.1.1.1 None
SRR3675585 HR-TB lineage4.9 None
SRR3675522 Other lineage4.9 None
ERR751326 Other lineage4.9 None
ERR2041725 MDR-TB lineage4.1.2.1 None
SRR1184294 Other lineage4.9 None
ERR108471 HR-TB lineage4.9 None
SRR21732980 Other lineage4.3.3 None
SRR14802079 MDR-TB lineage4.2.1 None
ERR736831 Other lineage4.9 None
SRR1172728 RR-TB La3 None
ERR4812155 Other lineage4.9 None
SRR3675229 Sensitive lineage4.9 None
ERR1334034 Other lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 None
ERR4769444 HR-TB lineage4.9 None
ERR926164 Other lineage4.9 None
SRR5341437 Sensitive lineage4.9 None
SRR7236330 Other La1.8.1 None
ERR4797313 Sensitive lineage2.2.1 None
SRR14782405 HR-TB lineage4.9 None
ERR9786440 Other lineage4.1 None
SRR16156775 Other lineage4.9 None
SRR6044790 Other lineage2.1;lineage4.9 None
ERR702404 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR4818347 Other lineage4.1.2 None
ERR4797054 Pre-XDR-TB lineage2.1 None
ERR3283040 HR-TB lineage4.9 None
ERR502532 Other M.canetti;lineage2.1;lineage6.3 None
ERR736871 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR4815752 Other lineage4.9 None
ERR502510 HR-TB lineage4.9 None
SRR3675311 Other lineage4.9 None
ERR4819422 HR-TB lineage4.9 None
SRR6045380 Other lineage2.1;lineage4.9 None
ERR4831638 Sensitive lineage1.1.1;lineage4 None
SRR1175507 Sensitive lineage4.1.1.3;lineage4.9 None
ERR11466146 Other lineage4.3.4.2.1 None
SRR25827507 MDR-TB lineage4.1.1.1 None
ERR473334 HR-TB lineage4.9 None
ERR502511 HR-TB lineage4.9 None
SRR7496509 Other None
ERR1063896 HR-TB None
SRR1175074 Other None
SRR1173363 Other None
ERR9117709 Other None
ERR234659 HR-TB None
SRR25827682 Other None
SRR1172857 Other None
SRR7496517 Other None
ERR9787197 Other None
SRR3675236 Other None
SRR28119805 Other lineage4.9 None
ERR752229 Other lineage4.5 None
SRR1196583 Other lineage4.9 None
ERR4818710 Sensitive lineage4.9 None
SRR9971114 Other lineage2.2.1 None
SRR3675524 Other lineage4.9;lineage6.3 None
ERR4798493 MDR-TB lineage2.2.1 None
SRR3675449 RR-TB M.canetti;lineage4.9 None
ERR5336148 Other lineage2.1;lineage6.3 None
SRR3742665 HR-TB M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
ERR4831616 MDR-TB lineage2.2.1 None
ERR4769493 Other lineage4.9 None
SRR3742657 Pre-XDR-TB La3;M.canetti;lineage2.2.1 None
ERR3283027 Other lineage2.1;lineage4.9;lineage6.3 None
SRR3675581 Other lineage2.1;lineage4.9 None
ERR400320 Sensitive lineage4.9 None
SRR1173629 Other lineage2.1;lineage4.9 None
SRR6045217 Other lineage4.9 None
ERR4811022 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4818929 HR-TB lineage4.9 None
ERR9117721 HR-TB La3;lineage1.1.2 None
ERR4188247 HR-TB lineage4.9 None
SRR9971041 MDR-TB lineage4.3.3 None
ERR926165 Other lineage4.9 None
ERR176549 Other lineage4.3.4.2.1 None
ERR9786569 Other lineage4.8 None
ERR6866410 HR-TB lineage4.9 None
SRR3675529 Other lineage2.1;lineage4.9;lineage6.3 None
SRR7535082 Other lineage4.9 None
ERR3797015 HR-TB lineage4.9 None
ERR926162 Sensitive lineage4.9 None
SRR5341422 HR-TB La1.7;lineage4.9;lineage7 None
ERR2512770 Sensitive lineage4.2.1 None
SRR5341300 HR-TB lineage4.9 None
ERR9786627 Other lineage4.1.2.1 None
SRR6045526 Other lineage4.9 None
ERR3283019 Other lineage2.1;lineage4.9 None
ERR4816762 Sensitive lineage4.9 None
SRR25827497 XDR-TB lineage2.2.1;lineage3 None
ERR3283030 HR-TB lineage4.9 None
ERR1063883 HR-TB lineage4.9 None
ERR400345 Other lineage4.9 None
SRR28119811 Other lineage2.2.1;lineage6.3 None
ERR3445504 Other lineage4.9;lineage6.1.3 None
SRR5341310 Other lineage1.1.2 None
SRR8552928 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR1173118 Other lineage2.2.1 None
SRR26159043 Other lineage4.9 None
ERR323066 HR-TB lineage4.9 None
ERR323043 Other lineage2.1;lineage4.9 None
ERR6359066 HR-TB lineage4.9 None
ERR4797350 Sensitive lineage1;lineage4.9 None
SRR5341308 HR-TB lineage4.9 None
SRR3675580 Sensitive lineage4.9 None
ERR1063846 HR-TB lineage4.9 None
SRR3675477 Sensitive lineage4.9 None
ERR553132 MDR-TB lineage4.1.2.1 None
SRR6511621 HR-TB lineage4.9 None
ERR4820854 Other lineage4.1.2.1 None
ERR2041726 MDR-TB lineage4.1.2.1 None
ERR2514552 Sensitive lineage3 None
ERR4814639 HR-TB lineage4.9 None
SRR5341323 Sensitive lineage4.9 None
ERR3273109 HR-TB lineage4 None
ERR4815555 Sensitive lineage4.1.2.1 None
ERR926163 Other lineage4.9 None
ERR3797070 Other lineage4.9 None
ERR3445502 HR-TB lineage4.9;lineage7 None
SRR3675221 Other lineage4.9 None
SRR3675467 Other lineage2.1;lineage4.9;lineage6.3 None