lineage | Count |
---|---|
133 | |
lineage4.1.2 | 2 |
lineage4.8 | 4 |
lineage4.3.2.1 | 1 |
lineage4 | 68 |
lineage3.1 | 3 |
lineage4.9 | 13 |
lineage4.1.2.1 | 3 |
La1.8.1 | 2 |
lineage1.1.2 | 1 |
La1.2 | 1 |
lineage3.1.2 | 1 |
lineage2.2 | 8 |
lineage2.2.1 | 11 |
lineage4.3.3 | 2 |
lineage4.3.4 | 1 |
lineage4.1.2.1.1 | 1 |
lineage4.6.2.2 | 2 |
La3 | 1 |
lineage2.2.1.2 | 2 |
lineage4.5 | 1 |
La1.7 | 1 |
La1.7.1 | 1 |
lineage7;lineage2.2.1.2 | 1 |
lineage4;lineage2.2 | 1 |
lineage4.1 | 2 |
lineage4.9;lineage4.8.1;lineage4.1.1 | 1 |
lineage2.1 | 1 |
lineage4.3 | 1 |
lineage4.1.1.3.1 | 1 |
lineage4.1.1.2 | 1 |
lineage4.9;lineage2.1 | 1 |
lineage2.2.1.1 | 1 |
La2 | 1 |
spoligotype | Count |
---|---|
None | 275 |
ID | Drug resistance | Lineage | Country iso2 | ERR323041 | HR-TB | None | SRR9970980 | Other | lineage4.1.2 | None | SRR9970979 | Sensitive | lineage4.8 | None | ERR323039 | HR-TB | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR323043 | HR-TB | None | ERR323107 | Other | lineage4 | None | ERR323045 | HR-TB | None | ERR323055 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323066 | Sensitive | lineage4 | None | ERR323108 | HR-TB | lineage4 | None | ERR323085 | Sensitive | lineage4 | None | ERR323053 | HR-TB | None | ERR323063 | HR-TB | None | ERR108471 | HR-TB | lineage4 | None | ERR1063883 | Sensitive | lineage4 | None | ERR1063896 | Sensitive | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR1035122 | Sensitive | None | ERR3283028 | Other | None | ERR3283013 | MDR-TB | lineage4 | None | ERR3283014 | HR-TB | None | ERR137286 | Sensitive | lineage4 | None | ERR323115 | Sensitive | lineage4 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3283017 | HR-TB | None | ERR3283024 | Other | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3468544 | HR-TB | None | ERR3283032 | HR-TB | None | ERR3283047 | HR-TB | None | ERR3445504 | HR-TB | None | ERR3283031 | HR-TB | None | ERR3283040 | HR-TB | None | ERR3283057 | HR-TB | lineage4 | None | ERR349265 | Sensitive | lineage4 | None | ERR349264 | Sensitive | lineage4 | None | ERR349298 | Sensitive | lineage4 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR369158 | Sensitive | lineage4 | None | ERR363449 | Sensitive | lineage4 | None | ERR363474 | Sensitive | lineage4 | None | ERR363499 | Sensitive | lineage4 | None | ERR363490 | Sensitive | lineage4 | None | ERR349299 | Sensitive | lineage4 | None | ERR363437 | Sensitive | lineage4 | None | ERR363446 | Sensitive | lineage4 | None | ERR363502 | Sensitive | lineage4 | None | ERR369162 | Sensitive | lineage4 | None | ERR3797016 | HR-TB | None | ERR3797015 | HR-TB | None | ERR3797017 | Other | None | ERR3797014 | Other | None | ERR3797044 | Other | None | ERR3797043 | HR-TB | None | ERR3797036 | HR-TB | None | ERR3797067 | Other | La1.8.1 | None | ERR3797048 | HR-TB | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797063 | HR-TB | None | ERR3797061 | Other | None | ERR3797087 | Sensitive | lineage4 | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3797081 | Sensitive | lineage4 | None | ERR3797079 | Sensitive | lineage4 | None | ERR3797064 | Sensitive | None | ERR3797083 | HR-TB | None | ERR4188247 | HR-TB | None | ERR4024991 | Other | None | ERR4188350 | HR-TB | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR4407463 | HR-TB | None | ERR473332 | Other | lineage4 | None | ERR4769497 | HR-TB | La1.2 | None | ERR4796254 | Sensitive | lineage4 | None | ERR4796929 | Sensitive | lineage4 | None | ERR4797184 | Sensitive | lineage4 | None | ERR4797264 | Sensitive | None | ERR4797474 | Other | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4811022 | HR-TB | None | ERR4799025 | Pre-XDR-TB | None | ERR4810741 | HR-TB | None | ERR4799378 | Sensitive | lineage4 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4799547 | Sensitive | lineage2.2.1 | None | ERR4811105 | HR-TB | None | ERR6358837 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR4811493 | HR-TB | None | ERR5908228 | Other | lineage4.3.3 | None | ERR6358979 | Other | None | ERR6866022 | Other | None | ERR6358991 | HR-TB | None | ERR6359045 | HR-TB | None | ERR6866547 | Sensitive | lineage4 | None | ERR6866410 | Sensitive | None | ERR6866639 | Other | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR702406 | HR-TB | None | ERR736856 | HR-TB | lineage4 | None | ERR736867 | HR-TB | None | ERR736872 | Sensitive | lineage4 | None | ERR736875 | HR-TB | lineage4 | None | ERR751326 | Sensitive | lineage4 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR736834 | Sensitive | lineage4 | None | ERR736835 | HR-TB | None | ERR736839 | Other | None | ERR736848 | HR-TB | None | ERR736865 | HR-TB | None | ERR736874 | HR-TB | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR8976043 | HR-TB | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9119096 | Other | lineage4.3.3 | None | SRR10315567 | Other | lineage2.2.1 | None | ERR9634265 | Sensitive | None | ERR9786843 | Other | None | SRR10808399 | Sensitive | lineage4 | None | SRR10808805 | Sensitive | None | SRR1158918 | Sensitive | lineage4 | None | SRR10809074 | Sensitive | lineage4 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1167384 | Other | lineage4 | None | SRR1172310 | HR-TB | None | SRR1169249 | Other | La3 | None | SRR1169306 | Other | None | SRR1173568 | Other | lineage4.9 | None | SRR1172728 | MDR-TB | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR1196546 | HR-TB | None | SRR1173777 | Other | lineage4 | None | SRR1174897 | HR-TB | None | SRR1175127 | Sensitive | lineage2.2.1.2 | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1180996 | HR-TB | lineage4 | None | SRR1183049 | Other | lineage2.2 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR12416824 | HR-TB | None | SRR11972169 | HR-TB | lineage2.2 | None | SRR13861386 | HR-TB | lineage4.9 | None | SRR13423544 | Other | lineage4.5 | None | SRR14782405 | HR-TB | None | SRR13986560 | Other | La1.7 | None | SRR13861484 | RR-TB | lineage4.9 | None | SRR20970016 | Other | lineage2.2 | None | SRR1791747 | Other | La1.8.1 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR14801749 | Sensitive | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR19304036 | HR-TB | None | SRR20969731 | Other | lineage2.2.1 | None | SRR8692905 | HR-TB | None | SRR8692790 | RR-TB | lineage4 | None | SRR8692800 | Other | lineage4 | None | SRR8692863 | Other | lineage4;lineage2.2 | None | ERR176779 | HR-TB | None | ERR176778 | HR-TB | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR3675486 | HR-TB | None | SRR3675465 | HR-TB | None | SRR3675482 | HR-TB | None | ERR779852 | Sensitive | lineage4.9;lineage4.8.1;lineage4.1.1 | None | ERR161033 | HR-TB | None | SRR3675270 | HR-TB | None | SRR3675222 | Other | None | SRR3675234 | Other | None | SRR3675246 | Sensitive | lineage4 | None | ERR702405 | Sensitive | lineage2.1 | None | ERR181824 | HR-TB | lineage4 | None | ERR181887 | HR-TB | None | ERR176568 | Other | lineage4.3 | None | SRR3675292 | Sensitive | lineage4 | None | SRR3675311 | Other | None | ERR176643 | HR-TB | None | SRR3675383 | HR-TB | None | SRR3675545 | HR-TB | None | ERR176740 | HR-TB | None | ERR176751 | HR-TB | None | ERR4816466 | HR-TB | None | ERR212001 | HR-TB | None | ERR212033 | HR-TB | None | SRR3675558 | HR-TB | None | ERR212121 | HR-TB | None | ERR2229184 | Sensitive | lineage4.8 | None | ERR2229369 | Other | lineage4.8 | None | SRR5341396 | Other | lineage4 | None | ERR234659 | HR-TB | None | ERR4818346 | Pre-XDR-TB | lineage4.1.1.3.1 | gb | SRR5341387 | Other | lineage4 | None | ERR2229789 | HR-TB | lineage4.8 | None | ERR4818252 | Other | lineage4.1.1.2 | None | SRR5341425 | Other | lineage4 | None | SRR5341455 | Sensitive | lineage4 | None | SRR5341456 | Other | None | SRR5341298 | Sensitive | lineage4 | None | SRR5341333 | HR-TB | None | SRR5341299 | Sensitive | lineage4 | None | SRR5341323 | Sensitive | lineage4 | None | SRR5341303 | RR-TB | lineage4 | None | ERR2693231 | Other | None | SRR5341366 | Sensitive | lineage4 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341469 | Other | lineage4 | None | SRR5341470 | HR-TB | None | SRR6046210 | Other | lineage4 | None | ERR502511 | Sensitive | lineage4.9;lineage2.1 | None | ERR2693230 | Other | None | ERR2693239 | HR-TB | None | ERR2693254 | Other | None | ERR278594 | HR-TB | None | ERR2693257 | Other | None | SRR6045519 | HR-TB | None | SRR5535933 | HR-TB | None | ERR4821655 | Sensitive | lineage4 | None | ERR4827907 | Sensitive | lineage2.2.1 | None | SRR6045053 | Other | None | SRR6045555 | HR-TB | None | SRR6046133 | HR-TB | None | SRR6044875 | HR-TB | lineage4.9 | None | SRR6044890 | Other | lineage4.9 | None | SRR6045952 | HR-TB | None | SRR6045795 | HR-TB | lineage2.2.1 | None | SRR6044835 | Sensitive | lineage4 | None | SRR6044876 | Sensitive | lineage4 | None | SRR6045264 | Sensitive | lineage2.2.1 | None | SRR6045217 | Other | lineage4 | None | SRR6045233 | HR-TB | None | SRR6325442 | HR-TB | None | SRR6045399 | Other | None | SRR6325444 | HR-TB | None | SRR6046299 | HR-TB | None | SRR6046225 | HR-TB | None | SRR6046259 | Sensitive | lineage4.9 | None | SRR6046594 | HR-TB | lineage4 | None | SRR6046397 | Other | None | ERR4830353 | Other | None | SRR6046492 | Other | None | SRR6046514 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6046644 | HR-TB | None | SRR6046617 | HR-TB | lineage2.2.1 | None | SRR6325447 | HR-TB | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | SRR6046878 | HR-TB | lineage4 | None | SRR6511621 | HR-TB | None | ERR4831117 | HR-TB | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR294248 | HR-TB | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | SRR6789624 | MDR-TB | lineage4.1 | None | ERR323034 | HR-TB | lineage3.1 | None | ERR294266 | HR-TB | None | ERR5311081 | HR-TB | None | ERR502510 | Sensitive | lineage4 | None | ERR502524 | HR-TB | La2 | None | ERR5311099 | HR-TB | None | ERR323036 | HR-TB | None | ERR502532 | HR-TB | None | ERR5311090 | HR-TB | None | SRR7496509 | Other | None | SRR8217918 | HR-TB | None | ERR323038 | HR-TB | None |
---|