lineage | Count |
---|---|
85 | |
lineage4.9 | 35 |
La1.2 | 2 |
lineage4 | 87 |
lineage2.2.1 | 14 |
lineage3.1.2 | 1 |
lineage3 | 8 |
lineage2.2 | 7 |
lineage4.6.1.1 | 1 |
lineage4.9.1 | 1 |
lineage4.3.2 | 1 |
lineage4.5 | 1 |
lineage1.1.2 | 2 |
lineage1.1.3.1 | 1 |
lineage4.6.2.2 | 5 |
lineage4.8 | 3 |
lineage4.8;lineage4.1 | 2 |
lineage4.1.2.1 | 2 |
lineage6.1.3 | 1 |
lineage6.1.1 | 2 |
lineage3.1.2.2;lineage3.1.2.1 | 1 |
La3 | 1 |
lineage1.2.1.2 | 1 |
lineage1.1.1 | 1 |
lineage7;lineage2.2.1.2 | 1 |
lineage9;lineage3.1 | 1 |
lineage6.3;lineage4.9;lineage2.1 | 1 |
lineage4.9;La1 | 1 |
lineage4.9;lineage4.6.3 | 1 |
lineage4.1.1.3 | 1 |
lineage2.1 | 2 |
lineage4.3.4.2.1 | 1 |
lineage3;lineage2.1 | 1 |
lineage4.9;lineage4.8.1;lineage4.1.1 | 1 |
lineage1.2.1.1 | 1 |
lineage4.3 | 1 |
lineage4.1 | 2 |
lineage4.1.1.2 | 1 |
lineage4.9;lineage2.1 | 1 |
lineage4.2.1 | 1 |
lineage4.1.2 | 2 |
lineage4.3.4.1 | 2 |
La2 | 1 |
lineage4.3.2.1 | 1 |
lineage4.4.2 | 1 |
spoligotype | Count |
---|---|
None | 290 |
ID | Drug resistance | Lineage | Country iso2 | ERR4769452 | HR-TB | None | ERR4769457 | Other | lineage4.9 | None | ERR4769450 | HR-TB | None | ERR4769497 | HR-TB | La1.2 | None | ERR4796254 | Sensitive | lineage4 | None | ERR4796472 | Pre-XDR-TB | lineage2.2.1 | None | ERR4797350 | Sensitive | lineage4.9 | None | ERR4797184 | Sensitive | lineage4 | None | ERR4797264 | Sensitive | None | ERR4796929 | Sensitive | lineage4 | None | ERR4797474 | Other | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4798431 | HR-TB | None | ERR4798504 | Other | lineage3 | None | ERR4798099 | Other | None | ERR4799025 | Pre-XDR-TB | None | ERR4799378 | Sensitive | lineage4 | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4799547 | Sensitive | lineage2.2.1 | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR4812155 | Sensitive | None | ERR4811030 | Sensitive | None | ERR4811493 | HR-TB | None | ERR6358991 | HR-TB | None | ERR6358979 | Other | None | ERR6359045 | HR-TB | None | ERR6866547 | Sensitive | lineage4 | None | ERR6866022 | Other | None | ERR6866410 | Sensitive | None | ERR6865502 | Sensitive | lineage4 | None | ERR736834 | Sensitive | lineage4 | None | ERR6866639 | Other | None | ERR245758 | Other | lineage4.9.1 | None | ERR736865 | HR-TB | None | ERR736835 | HR-TB | None | ERR736856 | HR-TB | lineage4 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR736872 | Sensitive | lineage4 | None | ERR751326 | Sensitive | lineage4 | None | ERR752229 | Other | lineage4.5 | None | SRR21733183 | RR-TB | lineage1.1.2 | None | ERR7821163 | Other | lineage2.2.1 | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9786444 | Sensitive | lineage4.8 | None | ERR9786076 | Sensitive | lineage3 | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | ERR9786526 | Other | lineage4.8;lineage4.1 | None | ERR9786525 | Other | lineage4.8;lineage4.1 | None | ERR9786656 | Sensitive | lineage4.1.2.1 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | ERR9786843 | Other | None | ERR9787153 | Other | lineage6.1.3 | None | ERR9787014 | Other | lineage6.1.1 | None | ERR987722 | HR-TB | None | SRR10808805 | Sensitive | None | ERR990545 | Other | lineage3 | None | SRR10808399 | Sensitive | lineage4 | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | SRR1167384 | Other | lineage4 | None | SRR10809074 | Sensitive | lineage4 | None | SRR1158918 | Sensitive | lineage4 | None | SRR1173777 | Other | lineage4 | None | SRR1172146 | Sensitive | lineage4.9 | None | SRR1169249 | Other | La3 | None | SRR1169306 | Other | None | SRR1172214 | HR-TB | lineage4.9 | None | SRR1172310 | HR-TB | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173788 | Other | None | SRR1174897 | HR-TB | None | SRR1181289 | Other | lineage2.2.1 | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR1183049 | Other | lineage2.2 | None | SRR12006550 | Other | lineage1.2.1.2 | None | SRR17658565 | Other | lineage3 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR16157123 | Other | lineage4.9 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | SRR14782405 | HR-TB | None | SRR14801749 | Sensitive | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR17832802 | HR-TB | lineage3 | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR20970016 | Other | lineage2.2 | None | SRR25827418 | Pre-XDR-TB | lineage9;lineage3.1 | None | ERR11082350 | MDR-TB | lineage4.6.2.2 | None | SRR23961558 | Other | lineage6.3;lineage4.9;lineage2.1 | None | SRR23961542 | Other | lineage4.9;La1 | None | SRR23961549 | Other | La1.2 | None | SRR3675455 | Sensitive | lineage4 | None | SRR26159047 | Other | lineage4.9;lineage4.6.3 | None | SRR3675477 | Other | lineage4.9 | None | SRR3675473 | Sensitive | lineage4.9 | None | SRR3675472 | Sensitive | lineage4.9 | None | ERR550636 | MDR-TB | lineage4.1.1.3 | None | ERR702405 | Sensitive | lineage2.1 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | SRR3675209 | Sensitive | lineage4.9 | None | ERR779852 | Sensitive | lineage4.9;lineage4.8.1;lineage4.1.1 | None | ERR4814734 | Other | lineage1.2.1.1 | None | SRR3675234 | Other | None | SRR3675265 | Other | lineage4 | None | SRR3675246 | Sensitive | lineage4 | None | SRR3675270 | HR-TB | None | ERR176740 | HR-TB | None | ERR176568 | Other | lineage4.3 | None | ERR176643 | HR-TB | None | SRR3675292 | Sensitive | lineage4 | None | SRR3675312 | HR-TB | lineage4 | None | SRR5341422 | HR-TB | lineage2.1 | None | ERR176751 | HR-TB | None | ERR212001 | HR-TB | None | SRR3675387 | Sensitive | None | SRR3675514 | Sensitive | lineage4.9 | None | SRR3675527 | RR-TB | lineage4.9 | None | SRR3675542 | Other | lineage4.9 | None | SRR3675545 | HR-TB | None | SRR3675577 | Sensitive | lineage4.9 | None | ERR212033 | HR-TB | None | SRR5341384 | Sensitive | lineage4.9 | None | ERR212121 | HR-TB | None | ERR4816466 | HR-TB | None | ERR4816656 | HR-TB | None | ERR2446566 | Other | lineage4.1 | None | SRR7898221 | MDR-TB | lineage1.1.2 | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR4818929 | HR-TB | None | ERR4819051 | Other | lineage4 | None | SRR5341373 | HR-TB | lineage4 | None | SRR5341453 | Sensitive | None | ERR4818607 | Sensitive | lineage4.9 | None | SRR5341387 | Other | lineage4 | None | SRR5341456 | Other | None | SRR5341400 | HR-TB | lineage4 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | SRR5341293 | HR-TB | lineage4 | None | SRR5341455 | Sensitive | lineage4 | None | ERR2514327 | HR-TB | lineage4.8 | None | SRR5341432 | HR-TB | lineage4 | None | SRR5341308 | Sensitive | lineage4 | None | SRR5341298 | Sensitive | lineage4 | None | SRR5341299 | Sensitive | lineage4 | None | SRR5341303 | RR-TB | lineage4 | None | SRR5341315 | Sensitive | None | SRR5341313 | HR-TB | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341323 | Sensitive | lineage4 | None | ERR2693257 | Other | None | SRR5341366 | Sensitive | lineage4 | None | SRR5341469 | Other | lineage4 | None | ERR502511 | Sensitive | lineage4.9;lineage2.1 | None | ERR2693254 | Other | None | ERR2693238 | HR-TB | lineage4.9 | None | ERR2693231 | Other | None | SRR5341470 | HR-TB | None | ERR4821053 | Other | lineage3 | None | ERR2693230 | Other | None | SRR6045503 | HR-TB | None | SRR5535933 | HR-TB | None | SRR6045555 | HR-TB | None | ERR2660539 | Other | lineage4.9 | None | SRR6046141 | Other | lineage4.9 | None | SRR6046133 | HR-TB | None | SRR6045706 | Sensitive | lineage4 | None | SRR6046152 | Other | lineage4.9 | None | SRR6045233 | HR-TB | None | SRR6044838 | Other | lineage4.9 | None | ERR2693232 | Other | lineage4.9 | None | SRR6045010 | Other | lineage4 | None | SRR6045217 | Other | lineage4 | None | SRR6045832 | HR-TB | lineage4.9 | None | SRR6045892 | Sensitive | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR6045053 | Other | None | SRR6046299 | HR-TB | None | SRR6045371 | Sensitive | lineage4.2.1 | None | SRR6045399 | Other | None | SRR6046046 | Other | None | SRR6046253 | HR-TB | lineage4.9 | None | SRR6046245 | Other | lineage4.9 | None | SRR6046385 | Other | lineage4.9 | None | ERR2851356 | Sensitive | lineage4.9 | None | SRR6046492 | Other | None | SRR6046594 | HR-TB | lineage4 | None | SRR6046644 | HR-TB | None | SRR6046878 | HR-TB | lineage4 | None | SRR6046802 | Other | lineage4 | None | ERR4831117 | HR-TB | None | SRR6511621 | HR-TB | None | SRR6046897 | Sensitive | lineage4 | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | SRR6789624 | MDR-TB | lineage4.1 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR4831638 | Sensitive | None | ERR294248 | HR-TB | None | SRR9970980 | Other | lineage4.1.2 | None | ERR11465353 | Sensitive | lineage4.3.4.1 | None | ERR502510 | Sensitive | lineage4 | None | ERR502524 | HR-TB | La2 | None | SRR7535082 | Sensitive | lineage4 | None | SRR7535086 | Other | None | ERR323053 | HR-TB | None | SRR9970979 | Sensitive | lineage4.8 | None | ERR323039 | HR-TB | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR323085 | Sensitive | lineage4 | None | ERR323107 | Other | lineage4 | None | ERR1034634 | HR-TB | None | ERR1035122 | Sensitive | None | ERR1063883 | Sensitive | lineage4 | None | ERR323066 | Sensitive | lineage4 | None | DRR188519 | Other | lineage4.4.2 | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | ERR1063896 | Sensitive | None | ERR137286 | Sensitive | lineage4 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR323115 | Sensitive | lineage4 | None | ERR3283013 | MDR-TB | lineage4 | None | ERR3283032 | HR-TB | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283024 | Other | None | ERR3283058 | Other | lineage4.9 | None | ERR3283040 | HR-TB | None | ERR349264 | Sensitive | lineage4 | None | ERR3283055 | HR-TB | None | ERR3445504 | HR-TB | None | ERR349265 | Sensitive | lineage4 | None | ERR349330 | Sensitive | lineage4 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR349298 | Sensitive | lineage4 | None | ERR349296 | Sensitive | lineage4 | None | ERR349299 | Sensitive | lineage4 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR363426 | Sensitive | lineage4 | None | ERR363421 | Sensitive | lineage4 | None | ERR363445 | Sensitive | lineage4 | None | ERR363446 | Sensitive | lineage4 | None | ERR363437 | Sensitive | lineage4 | None | ERR363453 | Sensitive | lineage4 | None | ERR363447 | Sensitive | lineage4 | None | ERR363449 | Sensitive | lineage4 | None | ERR363474 | Sensitive | lineage4 | None | ERR363456 | Sensitive | lineage4 | None | ERR363498 | Sensitive | lineage4 | None | ERR363479 | Sensitive | lineage4 | None | ERR363499 | Sensitive | lineage4 | None | ERR363506 | Sensitive | lineage4 | None | ERR363502 | Sensitive | lineage4 | None | ERR363490 | Sensitive | lineage4 | None | ERR363500 | Sensitive | lineage4 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR363509 | Sensitive | lineage4 | None | ERR369158 | Sensitive | lineage4 | None | ERR369159 | Sensitive | lineage4 | None | ERR3797015 | HR-TB | None | ERR369162 | Sensitive | lineage4 | None | ERR373945 | HR-TB | lineage4 | None | ERR369163 | Sensitive | lineage4 | None | ERR373946 | Sensitive | lineage4 | None | ERR373947 | Sensitive | lineage4 | None | ERR3797010 | Sensitive | lineage4.9 | None | ERR3797014 | Other | None | ERR3797017 | Other | None | ERR3797046 | HR-TB | None | ERR3797043 | HR-TB | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR3797044 | Other | None | ERR3799304 | Other | lineage6.1.1 | None | ERR3797036 | HR-TB | None | ERR3797061 | Other | None | ERR400326 | Sensitive | lineage4 | None | ERR400320 | Sensitive | lineage4 | None | ERR400336 | Sensitive | lineage4 | None | ERR4024991 | Other | None | ERR400345 | Other | lineage4 | None | ERR4178226 | Sensitive | lineage4 | None |
---|