Rv0006 - c.1236G>A
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
5 Sensitive
11 RR-TB
72 HR-TB
35 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
40 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 3 |
| lineage1.1.2 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 24 |
| lineage4.1.2.1 | 5 |
| 2 | |
| lineage4.3.2 | 1 |
| M.canetti;lineage4.3.1;lineage4.9 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9 | 12 |
| M.canetti;lineage1 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3 | 6 |
| lineage4.9 | 25 |
| lineage4.9;lineage6.3 | 1 |
| lineage2.1;lineage4.9 | 6 |
| M.canetti;lineage4.9 | 5 |
| M.canetti;lineage2.1;lineage4.1.2.1 | 1 |
| lineage4.5 | 1 |
| lineage2.2 | 1 |
| lineage1.1.1 | 1 |
| lineage4.4.1.1 | 2 |
| La1.7.1 | 1 |
| La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 2 |
| lineage4.2;lineage4.8.1;lineage4.9 | 2 |
| La3;M.canetti;lineage3.1 | 1 |
| M.canetti;lineage2.1;lineage3 | 1 |
| lineage4.2;lineage4.9 | 2 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 4 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| La3;M.canetti;lineage4.8;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | 1 |
| La1.7.X-unk4;lineage4.9 | 1 |
| La3;M.canetti;lineage2.1;lineage3.1 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 4 |
| La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| La3;M.canetti;lineage4.9 | 2 |
| La1.6;La3;lineage4.6.4;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 3 |
| La1.6;La3;lineage4.9 | 1 |
| lineage4.8 | 1 |
| La1.7;M.canetti;lineage4.9 | 3 |
| lineage4.9;lineage9 | 1 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | 2 |
| lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| La1.8.1 | 2 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage4.1.1;lineage4.9 | 1 |
| lineage4.1.1.1 | 1 |
| lineage2.2.1.1 | 1 |
| lineage4.3.3 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9 | 1 |
| M.canetti;lineage2.1 | 1 |
| La1.7;lineage4.9 | 1 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| M.canetti;lineage2.1;lineage4 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.2 | 1 |
| lineage1.1 | 1 |
| lineage4.1.1.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 165 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4800527 | MDR-TB | lineage2.2.1 | None | SRR7898221 | MDR-TB | lineage1.1.2 | None | ERR161033 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR6358991 | HR-TB | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR9119138 | RR-TB | M.canetti;lineage4.3.1;lineage4.9 | None | ERR3283016 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR15014655 | Other | M.canetti;lineage1 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | ERR3283020 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.9 | None | SRR3675481 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR6044942 | HR-TB | lineage4.9 | None | SRR3675561 | Other | M.canetti;lineage2.1;lineage4.9 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | ERR278594 | HR-TB | lineage2.1;lineage4.9 | None | SRR6045399 | Other | M.canetti;lineage4.9 | None | ERR1023295 | MDR-TB | M.canetti;lineage2.1;lineage4.1.2.1 | None | ERR2229143 | RR-TB | lineage4.9 | None | SRR13423544 | Other | lineage4.5 | None | SRR3675515 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | ERR8976043 | HR-TB | lineage2.2 | None | SRR13861381 | HR-TB | lineage4.9 | None | SRR6045290 | RR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6045948 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR13861288 | Other | lineage4.9 | None | SRR13861396 | HR-TB | lineage4.9 | None | ERR4188350 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | SRR8217918 | HR-TB | lineage4.9 | None | SRR1173767 | MDR-TB | lineage4.4.1.1 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | SRR7240492 | HR-TB | La1.7.1 | None | SRR3675450 | HR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR5311090 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR323033 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR6046485 | Other | lineage4.9 | None | ERR323054 | MDR-TB | La3;M.canetti;lineage3.1 | None | ERR4814536 | MDR-TB | M.canetti;lineage2.1;lineage3 | None | SRR6046026 | RR-TB | lineage4.2;lineage4.9 | None | SRR1165584 | Other | lineage4.1.2.1 | None | ERR473314 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR124652 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR126600 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR1162864 | Other | lineage4.1.2.1 | None | ERR323047 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR6045555 | Other | lineage4.9 | None | SRR6046397 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1640750 | Other | None | SRR3675568 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | None | SRR3675444 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR323060 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR038268 | HR-TB | La3;M.canetti;lineage4.8;lineage4.9 | None | ERR4188342 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR1165506 | Other | lineage4.1.2.1 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR1035239 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR323063 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR3283024 | Other | La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | None | ERR323058 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | ERR2693242 | RR-TB | lineage2.1;lineage4.9 | None | ERR3797044 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | None | ERR294248 | MDR-TB | lineage2.1;lineage4.9 | None | SRR3675506 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | ERR5311083 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR323034 | MDR-TB | La3;M.canetti;lineage2.1;lineage3.1 | None | ERR2693245 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR5162090 | RR-TB | lineage4.9 | None | ERR124651 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR6358979 | Other | lineage4.9 | None | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | ERR5311100 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR5311101 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR323036 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | ERR2693231 | Other | La1.6;La3;lineage4.6.4;lineage4.9 | None | SRR6325445 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR323040 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675486 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR2693254 | Other | La1.6;La3;lineage4.9 | None | ERR2514327 | HR-TB | lineage4.8 | None | ERR5311078 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | ERR294266 | HR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | SRR29231479 | RR-TB | lineage4.9 | None | ERR3797043 | Sensitive | lineage4.9 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | SRR6046644 | HR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | ERR5311082 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | None | ERR5311089 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR2693230 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR3675464 | HR-TB | lineage2.1;lineage4.9;lineage6.3;lineage8 | None | ERR126618 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR1791696 | Other | La1.8.1 | None | ERR4816466 | HR-TB | lineage4.9 | None | SRR6325444 | MDR-TB | M.canetti;lineage2.1;lineage6.3 | None | ERR5311099 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6046594 | Sensitive | lineage4.9 | None | SRR6325442 | HR-TB | lineage4.1.1;lineage4.9 | None | SRR6325447 | HR-TB | lineage4.1.1.1 | None | ERR176766 | HR-TB | lineage2.1;lineage4.9 | None | ERR323055 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR6079962 | HR-TB | lineage2.2.1.1 | None | SRR6831950 | Sensitive | lineage4.3.3 | None | SRR3675494 | RR-TB | lineage4.9 | None | ERR5311096 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR5311102 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3283017 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 | None | SRR3675234 | Other | La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | SRR3675320 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9 | None | ERR3283018 | HR-TB | lineage4.9 | None | ERR1873393 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR323041 | HR-TB | M.canetti;lineage2.1 | None | ERR323038 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR6045233 | Other | M.canetti;lineage4.9 | None | ERR3797014 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR386953 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | SRR6325448 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR3675554 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | SRR10808730 | Other | lineage4.9 | None | SRR6044815 | Other | lineage4.9 | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | SRR3675487 | Other | M.canetti;lineage4.9 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | SRR3675243 | Other | lineage4.9 | None | SRR3675558 | HR-TB | M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | None | SRR3675545 | Other | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR5311098 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR6358837 | HR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR3797016 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6045952 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR3283042 | Other | lineage4.9 | None | SRR3675322 | HR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | None | ERR176658 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675508 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR3468607 | Other | lineage4.9 | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | ERR2693229 | RR-TB | La3;M.canetti;lineage4.9 | None | SRR6046514 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR2693239 | RR-TB | M.canetti;lineage2.1;lineage4 | None | ERR5311081 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR124642 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | SRR1163221 | MDR-TB | lineage4.1.2.1 | None | ERR2693228 | RR-TB | lineage4.9 | None | ERR126608 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | ERR1873396 | Pre-XDR-TB | M.canetti;lineage2.2 | None | ERR3077978 | Other | lineage1.1 | None | SRR6046133 | HR-TB | lineage4.9 | None | ERR3468544 | Other | lineage2.1;lineage4.9 | None | SRR29050859 | Other | lineage4.9 | None | ERR323064 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR3797023 | HR-TB | La1.8.1 | None | SRR6045219 | HR-TB | lineage4.9 | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None |
|---|
