Rv3596c - c.1780_1782delCTAinsTG
Drug resistance types
1 Sensitive
8 RR-TB
21 HR-TB
8 MDR-TB
3 Pre-XDR-TB
1 XDR-TB
60 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 23 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 4 |
| lineage2.1;lineage4.9 | 4 |
| La3;lineage3 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.9 | 1 |
| lineage4 | 2 |
| La3;lineage4.9 | 3 |
| lineage4.2.2.2 | 1 |
| lineage4.6.2.2 | 1 |
| lineage1.1.2 | 2 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage4.1.2.1 | 4 |
| lineage1.1.3.2 | 1 |
| La3 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| lineage4.3.4.1 | 2 |
| lineage6.1.3 | 2 |
| lineage4.3.4.2 | 1 |
| lineage2.2.1.1 | 3 |
| lineage4.2;lineage4.8.1;lineage4.9 | 1 |
| La1.7;lineage4.2 | 1 |
| lineage2.2.1 | 4 |
| 7 | |
| La3;lineage2.1;lineage6.3 | 1 |
| La3;lineage4.8 | 1 |
| La3;lineage2.1;lineage4.9 | 3 |
| lineage6.3.1 | 1 |
| lineage2.1 | 2 |
| lineage4.7 | 1 |
| La3;lineage1.1.2 | 1 |
| lineage4.8 | 2 |
| lineage1.1;lineage4 | 1 |
| lineage2.2.1;lineage3 | 1 |
| lineage4.1.1.1 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage2.2 | 1 |
| lineage2.1;lineage6.3 | 1 |
| lineage3 | 1 |
| lineage4.1;lineage4.8 | 1 |
| lineage2.2.1;lineage6.3 | 1 |
| M.canetti;lineage1 | 1 |
| lineage4.3.2 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 1 |
| lineage4.1.3 | 1 |
| lineage4.8.1 | 1 |
| lineage4.2;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 102 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1196583 | Other | lineage4.9 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR1023302 | MDR-TB | La3;lineage3 | None | ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | ERR181887 | Other | lineage4.9 | None | ERR2027263 | Other | lineage4 | None | SRR1169306 | Other | La3;lineage4.9 | None | ERR2513470 | Other | lineage4.2.2.2 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | SRR7898221 | MDR-TB | lineage1.1.2 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR7821123 | Other | lineage1.1.3.2 | None | SRR1172728 | RR-TB | La3 | None | SRR8217918 | HR-TB | lineage4.9 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR11466499 | Other | lineage4.3.4.1 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR9787153 | Other | lineage6.1.3 | None | ERR11641184 | Pre-XDR-TB | lineage4.3.4.2 | None | SRR1184024 | RR-TB | lineage2.2.1.1 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | SRR23961559 | Other | La1.7;lineage4.2 | None | SRR3675311 | Other | lineage4.9 | None | ERR7821163 | Other | lineage2.2.1 | None | SRR1184381 | MDR-TB | None | ERR11252612 | Other | La3;lineage4.9 | None | SRR1172857 | Other | None | ERR9787197 | Other | None | SRR28119805 | Other | lineage4.9 | None | ERR4817060 | Other | None | ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None | ERR4817893 | Other | La3;lineage4.8 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR1710057 | Other | lineage2.1 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR18003019 | Other | lineage2.2.1 | None | SRR26399973 | Other | La3;lineage4.9 | None | ERR4819932 | Other | lineage4.7 | None | SRR1173355 | Other | lineage4.9 | None | ERR9117721 | HR-TB | La3;lineage1.1.2 | None | ERR12015086 | RR-TB | lineage4.8 | None | ERR4819322 | Other | lineage1.1;lineage4 | None | SRR15368973 | Other | lineage4.9 | None | SRR25827497 | XDR-TB | lineage2.2.1;lineage3 | None | SRR26159043 | Other | lineage4.9 | None | ERR11489020 | MDR-TB | lineage2.2.1 | None | ERR553132 | MDR-TB | lineage4.1.2.1 | None | ERR176793 | Other | lineage4.1.1.1 | None | ERR176779 | HR-TB | lineage4.9 | None | SRR1165699 | Other | lineage4.9 | None | ERR4819877 | HR-TB | lineage4.9 | None | ERR4816478 | HR-TB | lineage4 | None | SRR1181091 | Other | lineage2.2.1.1 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR1172234 | Other | lineage4.9 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR212125 | HR-TB | lineage4.9 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | SRR7131023 | Other | lineage4.1.2.1 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR212001 | HR-TB | None | SRR3675275 | Other | lineage4.9 | None | ERR9787336 | RR-TB | lineage6.1.3 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | SRR1183049 | RR-TB | lineage2.2 | None | ERR3797069 | Other | lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | ERR4820773 | HR-TB | lineage4.9 | None | ERR9896144 | Other | lineage3 | None | SRR6045526 | Other | lineage4.9 | None | SRR6046066 | Other | lineage4.9 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR9786526 | Other | lineage4.1;lineage4.8 | None | SRR28119811 | Other | lineage2.2.1;lineage6.3 | None | SRR15014655 | Other | M.canetti;lineage1 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR3797085 | Other | lineage4.9 | None | ERR4815441 | HR-TB | lineage4.9 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR9786443 | Sensitive | lineage4.8 | None | ERR4817731 | HR-TB | lineage4.9 | None | ERR4798139 | RR-TB | lineage1.1.2 | None | ERR3290633 | Other | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR4816656 | Other | lineage4.9 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | SRR12708389 | MDR-TB | lineage4.8.1 | None | ERR4797054 | Pre-XDR-TB | lineage2.1 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | SRR6046026 | RR-TB | lineage4.2;lineage4.9 | None | ERR11252664 | Other | lineage2.2.1 | None | ERR2514692 | Other | None | SRR25827682 | Other | None |
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