Rv3596c - c.1780_1782delCTAinsTG


Drug resistance types
7 Sensitive 16 RR-TB 47 HR-TB 30 MDR-TB 4 Pre-XDR-TB 3 XDR-TB 163 Other
lineage Counts
lineage Count
lineage4.9;lineage6.3 6
La1.2.BCG;La1.8.1 1
La3;lineage2.1;lineage4.9;lineage6.3 3
M.canetti;lineage4.9 1
lineage2.1;lineage4.9 14
lineage2.2.1;lineage3 1
lineage4.1.2.1 13
lineage4 3
lineage4.1;lineage4.8 2
M.canetti;lineage2.2.2;lineage6.2 2
La3;lineage4.9 6
lineage2.2.1 16
lineage4.4.1.1 2
lineage2.1;lineage4.9;lineage6.3 10
lineage4.9 54
lineage1.1.2 3
lineage2.1;lineage4.3.2;lineage4.9 1
lineage4.8 8
lineage1.2.1.2 1
lineage4.3.3 1
lineage4.3.2.1 1
lineage2.2.1.1 4
lineage4.2;lineage4.6.3;lineage4.9 1
La3;lineage2 1
lineage1.2.2.2 1
lineage2.1 5
lineage6.1.3 3
lineage4.3.4.2 1
lineage4.1.1.3 5
lineage4.6.2.2 3
25
La3;lineage2.1;lineage6.3 1
lineage2.1;lineage6.3 2
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
La3;lineage4.8 2
La3;lineage2.1;lineage4.9 3
La3;M.canetti;lineage2.2.1 1
lineage1.1;lineage4 1
lineage2.2.1;lineage6.3 1
lineage3.1 1
M.canetti;lineage4.2;lineage4.9 1
lineage1.1.3.2 1
lineage4.3.2 1
La3 2
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 1
lineage1.1.1 1
lineage4.1.3 2
lineage4.1 1
lineage4.3.4.1 2
lineage4.8.1 1
lineage4.1.2 1
M.canetti;lineage2.1;lineage6.3 1
lineage4.2;lineage4.8.1;lineage4.9 2
lineage4.6.3;lineage4.9;lineage6.3 1
lineage4.2;lineage4.6.3;lineage4.9.1 2
lineage4.2;lineage4.9 3
lineage4.6.3;lineage4.9 1
lineage3 5
lineage3.1.2.1;lineage4.9 1
lineage6.3.1 1
lineage2.2.1;lineage3;lineage4 1
La3;lineage1.1.2 1
La3;lineage3 1
lineage4.6.1.1 1
M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
lineage4.2.2.2 1
La1.7.1;La1.7.X-unk4 1
M.canetti;lineage1 1
lineage5.2 2
lineage4.1.1.1 3
M.canetti;lineage2.1;lineage4.9 2
La3;lineage2.2.1 1
La1.7;lineage4.2 1
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 1
M.canetti;lineage2.2 2
lineage4.3.4.2.1 2
lineage4.7 2
M.canetti;lineage4.9;lineage9 1
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
lineage2.2 1
lineage2.2.2 1
spoligotype Counts
spoligotype Count
None 270
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR3675465 Other lineage4.9;lineage6.3 None
ERR4818021 Other La1.2.BCG;La1.8.1 None
ERR4811105 HR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
ERR736839 HR-TB M.canetti;lineage4.9 None
SRR5341333 HR-TB lineage2.1;lineage4.9 None
SRR25827497 XDR-TB lineage2.2.1;lineage3 None
SRR3675232 Other lineage4.1.2.1 None
ERR2027263 Other lineage4 None
ERR9786526 Other lineage4.1;lineage4.8 None
ERR4831546 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
SRR1169306 Other La3;lineage4.9 None
ERR502912 Other lineage2.2.1 None
ERR4816559 MDR-TB lineage4.4.1.1 None
SRR1049674 HR-TB lineage2.2.1 None
SRR8552928 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR323043 Other lineage2.1;lineage4.9 None
SRR6789621 Other lineage4.9 None
SRR7898221 MDR-TB lineage1.1.2 None
SRR1173400 Other lineage4.9 None
SRR6045327 Other lineage2.1;lineage4.3.2;lineage4.9 None
ERR3797085 Other lineage4.9 None
ERR553132 MDR-TB lineage4.1.2.1 None
SRR7496472 Other lineage4.9 None
ERR4820854 Other lineage4.1.2.1 None
ERR9786443 Sensitive lineage4.8 None
SRR3675467 Other lineage2.1;lineage4.9;lineage6.3 None
SRR12006550 Other lineage1.2.1.2 None
ERR9786421 Other lineage4.1.2.1 None
SRR1165699 Other lineage4.9 None
ERR12015084 Other lineage4.8 None
SRR21732980 Other lineage4.3.3 None
SRR12708396 MDR-TB lineage4.3.2.1 None
SRR21690574 Other lineage4.1.2.1 None
SRR8217918 HR-TB lineage4.9 None
SRR1181091 Other lineage2.2.1.1 None
ERR5311097 Other lineage4.2;lineage4.6.3;lineage4.9 None
ERR9786694 Other lineage4.1.2.1 None
SRR6458423 HR-TB lineage2.2.1 None
ERR702404 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR20969677 HR-TB La3;lineage2 None
SRR10808730 Other lineage4.9 None
ERR4797201 Other lineage1.2.2.2 None
ERR4797054 Pre-XDR-TB lineage2.1 None
ERR9787153 Other lineage6.1.3 None
SRR1196546 Other lineage4.9 None
SRR3416776 Other lineage2.1 None
ERR11641184 Pre-XDR-TB lineage4.3.4.2 None
SRR1184024 RR-TB lineage2.2.1.1 None
ERR736871 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR11465024 Other lineage4.1.1.3 None
ERR4819422 HR-TB lineage4.9 None
SRR6045380 Other lineage2.1;lineage4.9 None
SRR1183106 RR-TB lineage2.2.1.1 None
SRR1183144 RR-TB lineage2.2.1 None
SRR6044855 Sensitive lineage4.9 None
ERR9786645 Other lineage4.6.2.2 None
SRR7131023 Other lineage4.1.2.1 None
SRR3675572 Other None
ERR4818615 Sensitive None
ERR9786671 Other None
ERR9786843 Other None
SRR1184372 MDR-TB None
SRR18213713 HR-TB None
SRR25827682 Other None
SRR1172857 Other None
SRR7496517 Other None
ERR4816999 Other None
ERR4810741 HR-TB La3;lineage2.1;lineage6.3 None
SRR3675524 Other lineage4.9;lineage6.3 None
ERR176651 Other lineage4.9 None
ERR5336148 Other lineage2.1;lineage6.3 None
SRR3742665 HR-TB M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
SRR1184380 Other lineage2.1;lineage4.9 None
ERR9786656 Sensitive lineage4.1.2.1 None
ERR4817893 Other La3;lineage4.8 None
SRR3675549 Other lineage4.9 None
ERR176568 HR-TB La3;lineage2.1;lineage4.9 None
SRR3742657 Pre-XDR-TB La3;M.canetti;lineage2.2.1 None
ERR3283027 Other lineage2.1;lineage4.9;lineage6.3 None
SRR1710057 Other lineage2.1 None
ERR12015085 Other lineage4.8 None
ERR9787336 RR-TB lineage6.1.3 None
ERR736874 Other La3;lineage2.1;lineage4.9 None
ERR212033 Other lineage4.9 None
ERR4818929 HR-TB lineage4.9 None
SRR1173355 Other lineage4.9 None
ERR4817735 Other lineage4.8 None
SRR19303884 Other lineage2.1;lineage6.3 None
ERR4816466 HR-TB lineage4.9 None
ERR702406 Other lineage2.1 None
ERR4819322 Other lineage1.1;lineage4 None
ERR3283044 Other lineage4 None
ERR4811311 Other lineage2.1;lineage4.9;lineage6.3 None
SRR15368973 Other lineage4.9 None
ERR3283019 Other lineage2.1;lineage4.9 None
SRR1173778 Other lineage4.9 None
ERR181887 Other lineage4.9 None
ERR176643 Other La3;lineage4.9 None
SRR28119811 Other lineage2.2.1;lineage6.3 None
SRR1184346 HR-TB lineage3.1 None
ERR4811142 RR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
ERR4815441 HR-TB lineage4.9 None
SRR3675571 MDR-TB M.canetti;lineage4.2;lineage4.9 None
ERR4872119 MDR-TB lineage4.6.2.2 None
ERR7821123 Other lineage1.1.3.2 None
ERR9117805 Other lineage4.3.2 None
ERR9786525 RR-TB lineage4.1;lineage4.8 None
ERR3797070 Other lineage4.9 None
ERR176779 HR-TB lineage4.9 None
ERR4817731 HR-TB lineage4.9 None
ERR4816478 HR-TB lineage4 None
SRR1172728 RR-TB La3 None
ERR4814352 Other lineage2.2.1 None
ERR1334034 Other lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 None
SRR14066533 RR-TB lineage1.1.1 None
ERR3283036 Other lineage2.1;lineage4.9 None
ERR4816656 Other lineage4.9 None
ERR4819781 Other lineage2.2.1 None
ERR9786611 HR-TB lineage4.1.3 None
ERR9786440 Other lineage4.1 None
ERR11466499 Other lineage4.3.4.1 None
SRR3675457 Other lineage4.9 None
SRR12708389 MDR-TB lineage4.8.1 None
ERR4818347 Other lineage4.1.2 None
SRR5341302 Other La3;lineage2.1;lineage4.9 None
ERR502532 Other M.canetti;lineage2.1;lineage6.3 None
ERR294266 MDR-TB lineage4.2;lineage4.8.1;lineage4.9 None
SRR3675574 Other lineage4.6.3;lineage4.9;lineage6.3 None
SRR3675508 MDR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR3283026 HR-TB lineage4.2;lineage4.6.3;lineage4.9.1 None
ERR9786682 Other lineage4.1.2.1 None
SRR6046026 RR-TB lineage4.2;lineage4.9 None
ERR9786642 Other lineage4.1.2.1 None
SRR1175074 Other None
SRR28119717 Other lineage4.9;lineage6.3 None
ERR11252558 Other lineage4.6.3;lineage4.9 None
ERR4815604 Other None
ERR11252612 Other La3;lineage4.9 None
ERR9117709 Other None
SRR28045133 Sensitive lineage3 None
SRR6789626 Other None
ERR234659 HR-TB None
SRR7535086 Other None
ERR2514692 Other None
ERR9787197 Other None
SRR3675236 Other None
SRR28119805 Other lineage4.9 None
SRR1196768 MDR-TB None
ERR4817060 Other None
SRR28119777 Other lineage4.9 None
SRR1196583 Other lineage4.9 None
ERR1035157 Other lineage4.9 None
SRR25827687 MDR-TB lineage1.1.2 None
ERR2514390 Sensitive lineage3.1.2.1;lineage4.9 None
ERR9787139 Other lineage6.3.1 None
ERR4811075 Other lineage2.1;lineage4.9;lineage6.3 None
ERR9786076 Other lineage3 None
SRR18003019 Other lineage2.2.1 None
SRR25827605 Pre-XDR-TB lineage2.2.1;lineage3;lineage4 None
ERR11465025 Other lineage4.1.1.3 None
SRR26399973 Other La3;lineage4.9 None
SRR15014682 MDR-TB lineage4.8 None
ERR9117721 HR-TB La3;lineage1.1.2 None
ERR4817896 HR-TB lineage2.2.1 None
ERR4820773 HR-TB lineage4.9 None
SRR26937107 MDR-TB lineage2.2.1 None
ERR9786569 Other lineage4.8 None
SRR1167384 Other La3;lineage4.9 None
SRR1173633 Other lineage4.9 None
SRR6045242 Other lineage2.1;lineage4.9 None
ERR1023302 MDR-TB La3;lineage3 None
SRR6046305 Sensitive lineage4.9 None
SRR3675214 Other lineage4.9 None
SRR6046225 Other lineage4.9;lineage6.3 None
ERR6358755 Other lineage4.6.1.1 None
ERR9786627 Other lineage4.1.2.1 None
SRR6045526 Other lineage4.9 None
SRR12142341 HR-TB lineage2.1 None
SRR6046066 Other lineage4.9 None
SRR3675216 Other lineage2.1;lineage4.9 None
ERR3804169 HR-TB lineage4.1.3 None
SRR26159043 Other lineage4.9 None
SRR6046397 RR-TB M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
ERR2513470 Other lineage4.2.2.2 None
ERR9119525 MDR-TB lineage4.6.2.2 None
ERR11489020 MDR-TB lineage2.2.1 None
ERR176778 HR-TB lineage4.9 None
SAMEA2533358 MDR-TB lineage4.1.1.3 None
ERR3445503 Other La1.7.1;La1.7.X-unk4 None
SRR15014655 Other M.canetti;lineage1 None
SRR3675248 Other lineage4.9 None
ERR1063846 HR-TB lineage4.9 None
ERR4872094 MDR-TB lineage5.2 None
SRR6046521 Other lineage4.4.1.1 None
ERR176793 Other lineage4.1.1.1 None
SRR6046540 Other lineage2.1;lineage4.9 None
SRR3675221 Other lineage4.9 None
SRR1172951 Other lineage4.9 None
SRR1184294 Other lineage4.9 None
SRR1196566 Other lineage4.9 None
ERR4819877 HR-TB lineage4.9 None
ERR176751 HR-TB lineage4.9 None
SRR13583478 HR-TB lineage4.3.4.1 None
ERR3804155 Other lineage4.1.2.1 None
ERR736859 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4798139 RR-TB lineage1.1.2 None
ERR11049020 Other lineage4.8 None
ERR3290633 Other lineage4.2;lineage4.6.3;lineage4.9.1 None
ERR9119500 MDR-TB lineage5.2 None
SRR1172234 Other lineage4.9 None
ERR12015083 Other La3;lineage4.8 None
SRR1165628 Other La3;lineage4.9 None
SRR1180147 RR-TB lineage2.2.1.1 None
ERR736867 Other lineage2.1;lineage4.9 None
SRR6044790 Other lineage2.1;lineage4.9 None
ERR4828872 RR-TB lineage4.2;lineage4.9 None
ERR1873492 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
ERR4797588 MDR-TB lineage3 None
SRR12416840 MDR-TB lineage4.9 None
ERR4815752 Other lineage4.9 None
SRR1172817 Other La3 None
SRR6045785 MDR-TB lineage4.2;lineage4.8.1;lineage4.9 None
SRR26937071 MDR-TB La3;lineage2.2.1 None
ERR9787165 Other lineage6.1.3 None
ERR212125 HR-TB lineage4.9 None
ERR9786601 Other lineage4.1.2.1 None
SRR23961559 Other La1.7;lineage4.2 None
SRR3675490 Other lineage2.1;lineage4.9;lineage6.3 None
SRR3675311 Other lineage4.9 None
ERR7821163 Other lineage2.2.1 None
SRR1180172 RR-TB lineage2.2.1 None
ERR4819241 Other lineage4.9 None
ERR736863 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR4831545 XDR-TB M.canetti;lineage2.2 None
SRR1165667 Other lineage4.9;lineage6.3 None
ERR11466146 Other lineage4.3.4.2.1 None
SRR25827507 MDR-TB lineage4.1.1.1 None
SRR19304036 Other La3;lineage2.1;lineage4.9;lineage6.3 None
SRR7496523 Other lineage4.7 None
ERR9786617 Other lineage4.1.1.1 None
ERR161037 HR-TB lineage4.9 None
ERR1063856 HR-TB M.canetti;lineage4.9;lineage9 None
SRR7496509 Other None
SRR28119756 Other lineage4.9;lineage6.3 None
SRR1184381 MDR-TB None
ERR9786604 Other None
ERR11252664 Other lineage2.2.1 None
ERR212001 HR-TB None
ERR550636 MDR-TB lineage4.1.1.3 None
ERR7911670 XDR-TB M.canetti;lineage2.2 None
SRR3675275 Other lineage4.9 None
ERR4798493 MDR-TB lineage2.2.1 None
ERR4800341 HR-TB lineage3 None
ERR502908 HR-TB lineage2.2.1 None
SRR6046295 MDR-TB lineage4.2;lineage4.9 None
SRR3675581 Other lineage2.1;lineage4.9 None
ERR11465665 Other lineage4.1.1.3 None
SRR1184388 Other lineage2.1;lineage4.9 None
SRR1173629 Other lineage2.1;lineage4.9 None
SRR12416824 HR-TB lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
ERR2514821 Other lineage2.2.1 None
SRR1183049 RR-TB lineage2.2 None
ERR4811022 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR3797069 Other lineage4.9 None
SRR18910194 HR-TB lineage2.2.2 None
ERR4819932 Other lineage4.7 None
ERR12015086 RR-TB lineage4.8 None
ERR176549 Other lineage4.3.4.2.1 None
SRR3675529 Other lineage2.1;lineage4.9;lineage6.3 None
ERR9896144 Other lineage3 None