Rv3596c - c.1780_1782delCTAinsTG


Drug resistance types
7 Sensitive 16 RR-TB 47 HR-TB 30 MDR-TB 4 Pre-XDR-TB 3 XDR-TB 163 Other
lineage Counts
lineage Count
La3;lineage4.9 6
lineage2.2.1;lineage6.3 1
lineage4.4.1.1 2
lineage4.2.2.2 1
lineage4.9 54
lineage3.1 1
La1.7.1;La1.7.X-unk4 1
M.canetti;lineage1 1
lineage5.2 2
lineage4.1.1.1 3
lineage1.1.3.2 1
lineage2.1;lineage4.9 14
lineage1.2.1.2 1
lineage4.1.2.1 13
lineage4.3.2.1 1
lineage4.2;lineage4.6.3;lineage4.9.1 2
lineage2.2.1 16
lineage4.1.3 2
lineage4.2;lineage4.6.3;lineage4.9 1
lineage4.3.4.1 2
La3;lineage4.8 2
lineage2.2.1.1 4
La3;lineage2 1
lineage4.8.1 1
lineage4.2;lineage4.9 3
lineage1.2.2.2 1
La3;lineage2.1;lineage4.9 3
M.canetti;lineage2.1;lineage6.3 1
M.canetti;lineage2.2.2;lineage6.2 2
lineage4.3.4.2 1
La3 2
La3;lineage2.2.1 1
La1.7;lineage4.2 1
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 1
lineage4.3.4.2.1 2
lineage4.7 2
25
lineage4.9;lineage6.3 6
La3;lineage2.1;lineage6.3 1
M.canetti;lineage2.2 2
lineage2.1;lineage6.3 2
lineage3.1.2.1;lineage4.9 1
La3;M.canetti;lineage2.2.1 1
lineage2.1;lineage4.9;lineage6.3 10
lineage3 5
M.canetti;lineage2.1;lineage4.9 2
lineage4.8 8
lineage2.1 5
La3;lineage3 1
La3;lineage2.1;lineage4.9;lineage6.3 3
M.canetti;lineage4.9 1
lineage4.1;lineage4.8 2
lineage4.6.2.2 3
lineage4.1.1.3 5
lineage4 3
lineage1.1.1 1
lineage4.1 1
lineage4.1.2 1
lineage6.1.3 3
lineage4.2;lineage4.8.1;lineage4.9 2
lineage4.6.3;lineage4.9;lineage6.3 1
lineage4.6.3;lineage4.9 1
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
lineage6.3.1 1
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
lineage2.2.1;lineage3;lineage4 1
La1.2.BCG;La1.8.1 1
lineage4.6.1.1 1
lineage2.2.1;lineage3 1
M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
lineage1.1.2 3
lineage2.1;lineage4.3.2;lineage4.9 1
M.canetti;lineage4.2;lineage4.9 1
lineage4.3.2 1
lineage4.3.3 1
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 1
M.canetti;lineage4.9;lineage9 1
lineage2.2 1
lineage2.2.2 1
La3;lineage1.1.2 1
lineage1.1;lineage4 1
spoligotype Counts
spoligotype Count
None 270
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR176643 Other La3;lineage4.9 None
SRR28119811 Other lineage2.2.1;lineage6.3 None
ERR4816559 MDR-TB lineage4.4.1.1 None
ERR2513470 Other lineage4.2.2.2 None
ERR176778 HR-TB lineage4.9 None
SRR1184346 HR-TB lineage3.1 None
SRR1173400 Other lineage4.9 None
ERR3445503 Other La1.7.1;La1.7.X-unk4 None
SRR15014655 Other M.canetti;lineage1 None
ERR4872094 MDR-TB lineage5.2 None
ERR176793 Other lineage4.1.1.1 None
ERR7821123 Other lineage1.1.3.2 None
SRR6046540 Other lineage2.1;lineage4.9 None
SRR1184294 Other lineage4.9 None
SRR12006550 Other lineage1.2.1.2 None
ERR9786421 Other lineage4.1.2.1 None
ERR176751 HR-TB lineage4.9 None
SRR12708396 MDR-TB lineage4.3.2.1 None
ERR4817731 HR-TB lineage4.9 None
SRR8217918 HR-TB lineage4.9 None
ERR3804155 Other lineage4.1.2.1 None
ERR3290633 Other lineage4.2;lineage4.6.3;lineage4.9.1 None
ERR4819781 Other lineage2.2.1 None
ERR9786611 HR-TB lineage4.1.3 None
ERR5311097 Other lineage4.2;lineage4.6.3;lineage4.9 None
ERR11466499 Other lineage4.3.4.1 None
SRR1172234 Other lineage4.9 None
ERR12015083 Other La3;lineage4.8 None
SRR1165628 Other La3;lineage4.9 None
SRR1180147 RR-TB lineage2.2.1.1 None
SRR20969677 HR-TB La3;lineage2 None
SRR12708389 MDR-TB lineage4.8.1 None
ERR4828872 RR-TB lineage4.2;lineage4.9 None
SRR10808730 Other lineage4.9 None
ERR4797201 Other lineage1.2.2.2 None
SRR5341302 Other La3;lineage2.1;lineage4.9 None
ERR502532 Other M.canetti;lineage2.1;lineage6.3 None
ERR1873492 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
ERR11641184 Pre-XDR-TB lineage4.3.4.2 None
SRR1184024 RR-TB lineage2.2.1.1 None
SRR1172817 Other La3 None
SRR26937071 MDR-TB La3;lineage2.2.1 None
ERR9786601 Other lineage4.1.2.1 None
SRR23961559 Other La1.7;lineage4.2 None
SRR3675311 Other lineage4.9 None
SRR6045380 Other lineage2.1;lineage4.9 None
ERR3283026 HR-TB lineage4.2;lineage4.6.3;lineage4.9.1 None
ERR736863 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR11466146 Other lineage4.3.4.2.1 None
SRR7131023 Other lineage4.1.2.1 None
SRR7496523 Other lineage4.7 None
ERR9786617 Other lineage4.1.1.1 None
ERR9786682 Other lineage4.1.2.1 None
SRR3675572 Other None
ERR9786671 Other None
SRR1175074 Other None
SRR28119717 Other lineage4.9;lineage6.3 None
ERR11252612 Other La3;lineage4.9 None
ERR234659 HR-TB None
ERR2514692 Other None
SRR25827682 Other None
SRR1172857 Other None
SRR7496517 Other None
ERR9787197 Other None
SRR28119805 Other lineage4.9 None
ERR1035157 Other lineage4.9 None
ERR4810741 HR-TB La3;lineage2.1;lineage6.3 None
ERR7911670 XDR-TB M.canetti;lineage2.2 None
SRR3675275 Other lineage4.9 None
ERR176651 Other lineage4.9 None
ERR5336148 Other lineage2.1;lineage6.3 None
ERR9786656 Sensitive lineage4.1.2.1 None
ERR2514390 Sensitive lineage3.1.2.1;lineage4.9 None
SRR6046295 MDR-TB lineage4.2;lineage4.9 None
SRR3742657 Pre-XDR-TB La3;M.canetti;lineage2.2.1 None
ERR3283027 Other lineage2.1;lineage4.9;lineage6.3 None
SRR3675581 Other lineage2.1;lineage4.9 None
SRR1173629 Other lineage2.1;lineage4.9 None
ERR9786076 Other lineage3 None
ERR4811022 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4818929 HR-TB lineage4.9 None
SRR19303884 Other lineage2.1;lineage6.3 None
SRR15014682 MDR-TB lineage4.8 None
ERR4820773 HR-TB lineage4.9 None
ERR702406 Other lineage2.1 None
ERR1023302 MDR-TB La3;lineage3 None
ERR4811105 HR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
ERR4811311 Other lineage2.1;lineage4.9;lineage6.3 None
SRR15368973 Other lineage4.9 None
ERR736839 HR-TB M.canetti;lineage4.9 None
SRR3675216 Other lineage2.1;lineage4.9 None
ERR9786526 Other lineage4.1;lineage4.8 None
ERR4831546 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
SRR1049674 HR-TB lineage2.2.1 None
ERR3804169 HR-TB lineage4.1.3 None
SRR26159043 Other lineage4.9 None
ERR9119525 MDR-TB lineage4.6.2.2 None
ERR323043 Other lineage2.1;lineage4.9 None
SAMEA2533358 MDR-TB lineage4.1.1.3 None
ERR4811142 RR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
SRR3675248 Other lineage4.9 None
ERR1063846 HR-TB lineage4.9 None
ERR3797085 Other lineage4.9 None
SRR7496472 Other lineage4.9 None
ERR4820854 Other lineage4.1.2.1 None
ERR9786525 RR-TB lineage4.1;lineage4.8 None
ERR3797070 Other lineage4.9 None
ERR9786443 Sensitive lineage4.8 None
SRR1165699 Other lineage4.9 None
ERR4816478 HR-TB lineage4 None
SRR1172728 RR-TB La3 None
ERR4814352 Other lineage2.2.1 None
SRR1181091 Other lineage2.2.1.1 None
ERR736859 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR14066533 RR-TB lineage1.1.1 None
ERR3283036 Other lineage2.1;lineage4.9 None
ERR9786694 Other lineage4.1.2.1 None
ERR9786440 Other lineage4.1 None
SRR3675457 Other lineage4.9 None
ERR736867 Other lineage2.1;lineage4.9 None
ERR702404 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR4818347 Other lineage4.1.2 None
ERR9787153 Other lineage6.1.3 None
SRR1196546 Other lineage4.9 None
ERR4797588 MDR-TB lineage3 None
SRR3416776 Other lineage2.1 None
ERR294266 MDR-TB lineage4.2;lineage4.8.1;lineage4.9 None
ERR4815752 Other lineage4.9 None
ERR9787165 Other lineage6.1.3 None
SRR3675574 Other lineage4.6.3;lineage4.9;lineage6.3 None
SRR1180172 RR-TB lineage2.2.1 None
ERR4819422 HR-TB lineage4.9 None
SRR1183106 RR-TB lineage2.2.1.1 None
SRR6044855 Sensitive lineage4.9 None
SRR1165667 Other lineage4.9;lineage6.3 None
SRR25827507 MDR-TB lineage4.1.1.1 None
SRR6046026 RR-TB lineage4.2;lineage4.9 None
SRR7496509 Other None
SRR1184381 MDR-TB None
ERR4818615 Sensitive None
ERR11252664 Other lineage2.2.1 None
ERR11252558 Other lineage4.6.3;lineage4.9 None
ERR9786843 Other None
SRR1184372 MDR-TB None
SRR7535086 Other None
SRR18213713 HR-TB None
SRR1196768 MDR-TB None
ERR4817060 Other None
SRR3675524 Other lineage4.9;lineage6.3 None
ERR4798493 MDR-TB lineage2.2.1 None
SRR3742665 HR-TB M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
SRR1184380 Other lineage2.1;lineage4.9 None
ERR4817893 Other La3;lineage4.8 None
SRR3675549 Other lineage4.9 None
ERR176568 HR-TB La3;lineage2.1;lineage4.9 None
ERR9787139 Other lineage6.3.1 None
SRR1710057 Other lineage2.1 None
ERR12015085 Other lineage4.8 None
ERR9787336 RR-TB lineage6.1.3 None
ERR736874 Other La3;lineage2.1;lineage4.9 None
SRR12416824 HR-TB lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
SRR25827605 Pre-XDR-TB lineage2.2.1;lineage3;lineage4 None
ERR11465025 Other lineage4.1.1.3 None
ERR4817735 Other lineage4.8 None
ERR4817896 HR-TB lineage2.2.1 None
SRR26937107 MDR-TB lineage2.2.1 None
ERR4816466 HR-TB lineage4.9 None
ERR9896144 Other lineage3 None
SRR1167384 Other La3;lineage4.9 None
SRR6045242 Other lineage2.1;lineage4.9 None
SRR6046305 Sensitive lineage4.9 None
SRR6046225 Other lineage4.9;lineage6.3 None
SRR3675465 Other lineage4.9;lineage6.3 None
ERR4818021 Other La1.2.BCG;La1.8.1 None
ERR6358755 Other lineage4.6.1.1 None
SRR6045526 Other lineage4.9 None
SRR12142341 HR-TB lineage2.1 None
ERR3283019 Other lineage2.1;lineage4.9 None
SRR5341333 HR-TB lineage2.1;lineage4.9 None
SRR25827497 XDR-TB lineage2.2.1;lineage3 None
ERR181887 Other lineage4.9 None
SRR3675232 Other lineage4.1.2.1 None
SRR6046066 Other lineage4.9 None
ERR2027263 Other lineage4 None
SRR1169306 Other La3;lineage4.9 None
ERR502912 Other lineage2.2.1 None
SRR8552928 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR6046397 RR-TB M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
ERR11489020 MDR-TB lineage2.2.1 None
SRR6789621 Other lineage4.9 None
SRR7898221 MDR-TB lineage1.1.2 None
SRR6045327 Other lineage2.1;lineage4.3.2;lineage4.9 None
ERR553132 MDR-TB lineage4.1.2.1 None
SRR6046521 Other lineage4.4.1.1 None
ERR4815441 HR-TB lineage4.9 None
SRR3675571 MDR-TB M.canetti;lineage4.2;lineage4.9 None
ERR4872119 MDR-TB lineage4.6.2.2 None
ERR9117805 Other lineage4.3.2 None
ERR176779 HR-TB lineage4.9 None
SRR3675221 Other lineage4.9 None
SRR3675467 Other lineage2.1;lineage4.9;lineage6.3 None
SRR1172951 Other lineage4.9 None
SRR1196566 Other lineage4.9 None
ERR12015084 Other lineage4.8 None
SRR21732980 Other lineage4.3.3 None
ERR4819877 HR-TB lineage4.9 None
SRR21690574 Other lineage4.1.2.1 None
SRR13583478 HR-TB lineage4.3.4.1 None
ERR4798139 RR-TB lineage1.1.2 None
ERR11049020 Other lineage4.8 None
ERR1334034 Other lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 None
ERR4816656 Other lineage4.9 None
ERR9119500 MDR-TB lineage5.2 None
SRR6458423 HR-TB lineage2.2.1 None
SRR6044790 Other lineage2.1;lineage4.9 None
ERR4797054 Pre-XDR-TB lineage2.1 None
SRR12416840 MDR-TB lineage4.9 None
ERR736871 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR6045785 MDR-TB lineage4.2;lineage4.8.1;lineage4.9 None
ERR11465024 Other lineage4.1.1.3 None
ERR212125 HR-TB lineage4.9 None
SRR3675490 Other lineage2.1;lineage4.9;lineage6.3 None
ERR7821163 Other lineage2.2.1 None
SRR3675508 MDR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR1183144 RR-TB lineage2.2.1 None
ERR4819241 Other lineage4.9 None
ERR4831545 XDR-TB M.canetti;lineage2.2 None
ERR9786645 Other lineage4.6.2.2 None
SRR19304036 Other La3;lineage2.1;lineage4.9;lineage6.3 None
ERR161037 HR-TB lineage4.9 None
ERR1063856 HR-TB M.canetti;lineage4.9;lineage9 None
ERR9786642 Other lineage4.1.2.1 None
SRR28119756 Other lineage4.9;lineage6.3 None
ERR9786604 Other None
ERR4815604 Other None
ERR9117709 Other None
SRR28045133 Sensitive lineage3 None
SRR6789626 Other None
ERR212001 HR-TB None
SRR3675236 Other None
ERR4816999 Other None
SRR28119777 Other lineage4.9 None
SRR1196583 Other lineage4.9 None
ERR550636 MDR-TB lineage4.1.1.3 None
ERR4800341 HR-TB lineage3 None
ERR502908 HR-TB lineage2.2.1 None
SRR25827687 MDR-TB lineage1.1.2 None
ERR4811075 Other lineage2.1;lineage4.9;lineage6.3 None
ERR11465665 Other lineage4.1.1.3 None
SRR1184388 Other lineage2.1;lineage4.9 None
ERR212033 Other lineage4.9 None
ERR2514821 Other lineage2.2.1 None
SRR1183049 RR-TB lineage2.2 None
ERR3797069 Other lineage4.9 None
SRR18910194 HR-TB lineage2.2.2 None
SRR18003019 Other lineage2.2.1 None
SRR26399973 Other La3;lineage4.9 None
ERR4819932 Other lineage4.7 None
SRR1173355 Other lineage4.9 None
ERR9117721 HR-TB La3;lineage1.1.2 None
ERR12015086 RR-TB lineage4.8 None
ERR176549 Other lineage4.3.4.2.1 None
ERR9786569 Other lineage4.8 None
SRR3675529 Other lineage2.1;lineage4.9;lineage6.3 None
SRR1173633 Other lineage4.9 None
ERR4819322 Other lineage1.1;lineage4 None
SRR3675214 Other lineage4.9 None
ERR3283044 Other lineage4 None
ERR9786627 Other lineage4.1.2.1 None
SRR1173778 Other lineage4.9 None