lineage | Count |
---|---|
51 | |
La1 | 1 |
lineage4.9 | 30 |
La1.8.1 | 7 |
La1.2 | 1 |
lineage4.1.2.1 | 13 |
lineage2.2 | 1 |
lineage4.3.3 | 4 |
lineage4.3.2 | 1 |
lineage4.5 | 2 |
lineage4.1.2.1.1 | 1 |
lineage4.8 | 1 |
lineage2 | 1 |
lineage2.2.2 | 1 |
lineage4.4.1.1 | 2 |
lineage2.2.1 | 7 |
lineage3.1.1 | 1 |
lineage7;lineage2.2.1.2 | 1 |
lineage1.2.1.2.1 | 1 |
lineage4.1 | 1 |
lineage3;lineage2.1 | 1 |
lineage4.3.4 | 1 |
lineage4.1.1.3 | 1 |
lineage3.1.2.1 | 1 |
lineage4;lineage1.1.2 | 1 |
lineage3 | 4 |
lineage4.1.1 | 1 |
lineage5.2 | 1 |
lineage4 | 2 |
lineage3.1 | 2 |
lineage4.9.1 | 1 |
lineage1.1 | 1 |
lineage4.3.4.2.1 | 1 |
spoligotype | Count |
---|---|
None | 146 |
ID | Drug resistance | Lineage | Country iso2 | ERR3283017 | HR-TB | None | ERR3283010 | Other | La1 | None | ERR3797016 | HR-TB | None | ERR3283055 | HR-TB | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3445504 | HR-TB | None | ERR3468488 | RR-TB | La1.8.1 | None | ERR3468544 | HR-TB | None | ERR3797046 | HR-TB | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797082 | Other | lineage4.9 | None | ERR3797060 | Other | La1.8.1 | None | ERR4188350 | HR-TB | None | ERR3797083 | HR-TB | None | ERR4188222 | MDR-TB | La1.8.1 | None | ERR4769452 | HR-TB | None | ERR4769433 | Pre-XDR-TB | lineage4.9 | None | ERR4799025 | Pre-XDR-TB | None | ERR4769450 | HR-TB | None | ERR4796351 | MDR-TB | lineage4.9 | None | ERR4769497 | HR-TB | La1.2 | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR5908228 | Other | lineage4.3.3 | None | ERR4811493 | HR-TB | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR6358837 | HR-TB | None | ERR752229 | Other | lineage4.5 | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | ERR9119096 | Other | lineage4.3.3 | None | ERR9786639 | Sensitive | lineage4.8 | None | SRR069989 | HR-TB | lineage2 | None | SRR1162740 | Other | lineage4.1.2.1 | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | ERR8976043 | HR-TB | None | SRR069981 | HR-TB | lineage2.2.2 | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1167055 | Other | lineage4.1.2.1 | None | SRR1165423 | Other | lineage4.1.2.1 | None | SRR1165584 | Other | lineage4.1.2.1 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR1173767 | HR-TB | lineage4.4.1.1 | None | SRR1184308 | Sensitive | lineage4.9 | None | SRR12882669 | RR-TB | lineage3.1.1 | None | SRR13861275 | Sensitive | lineage4.9 | None | SRR13861168 | RR-TB | lineage4.9 | None | SRR13861251 | RR-TB | lineage4.9 | None | SRR13423544 | Other | lineage4.5 | None | SRR13861224 | Sensitive | lineage4.9 | None | SRR13861242 | Other | lineage4.9 | None | SRR13861304 | Other | lineage4.9 | None | SRR13861288 | Other | lineage4.9 | None | SRR13861305 | Other | lineage4.9 | None | SRR13861329 | Other | lineage4.9 | None | SRR13861322 | Other | lineage4.9 | None | SRR13861386 | HR-TB | lineage4.9 | None | SRR13861332 | Other | lineage4.9 | None | ERR4813861 | Other | lineage4.3.3 | None | SRR13861611 | Sensitive | lineage4.9 | None | SRR14782405 | HR-TB | None | SRR1640750 | HR-TB | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR26399490 | Sensitive | lineage4.9 | None | SRR13861396 | HR-TB | lineage4.9 | None | SRR13861434 | RR-TB | lineage4.9 | None | SRR13861510 | Other | lineage4.9 | None | SRR13861529 | Sensitive | lineage4.9 | None | SRR13861553 | Sensitive | lineage4.9 | None | SRR13861566 | Other | lineage4.9 | None | SRR13861663 | Sensitive | lineage4.9 | None | SRR1510066 | Other | lineage1.2.1.2.1 | None | SRR1791696 | Other | La1.8.1 | None | SRR5709967 | MDR-TB | lineage2.2.1 | None | ERR176778 | HR-TB | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR6325445 | HR-TB | None | SRR3675383 | HR-TB | None | ERR1035239 | HR-TB | None | SRR3675482 | HR-TB | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | SRR3675270 | HR-TB | None | ERR161033 | HR-TB | None | ERR161039 | Sensitive | lineage4.3.4 | None | SRR3675486 | HR-TB | None | ERR181744 | HR-TB | None | ERR3275196 | Other | lineage2.2.1 | nl | SRR3675545 | HR-TB | None | SRR3675558 | HR-TB | None | ERR212123 | Other | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR4816717 | RR-TB | lineage3.1.2.1 | None | ERR3275215 | Other | lineage4.1.2.1 | nl | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | ERR3275220 | Other | lineage3 | nl | ERR2229143 | Other | lineage4.1.1 | None | ERR2509673 | Other | lineage2.2.1 | None | SAMN02414850 | Other | lineage4.1.2.1 | None | SRR5341456 | Other | None | SRR5431730 | Other | La1.8.1 | None | ERR2706950 | MDR-TB | lineage5.2 | cd | ERR2693238 | HR-TB | lineage4.9 | None | ERR2446563 | Other | lineage2.2.1 | nl | ERR6359082 | Other | lineage4.9 | None | SRR6045053 | Other | None | ERR278594 | HR-TB | None | ERR2446118 | Other | lineage4.1.2.1 | nl | ERR4821053 | Other | lineage3 | None | ERR2693239 | HR-TB | None | ERR2660539 | Other | lineage4.9 | None | ERR2446144 | Other | lineage3 | nl | SRR6045952 | HR-TB | None | SRR6046046 | Other | None | SRR6045217 | Other | lineage4 | None | SRR6325442 | HR-TB | None | SRR6046253 | HR-TB | lineage4.9 | None | SRR6046299 | HR-TB | None | ERR2517528 | Other | lineage3 | nl | SRR6325444 | HR-TB | None | ERR323034 | HR-TB | lineage3.1 | None | SRR6046492 | Other | None | SRR6046514 | HR-TB | None | SRR6325448 | HR-TB | None | ERR11466062 | Sensitive | lineage4.9.1 | None | ERR3077978 | Other | lineage1.1 | None | SRR6325447 | HR-TB | None | SRR6046878 | HR-TB | lineage4 | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | ERR4831529 | Pre-XDR-TB | lineage2.2.1 | None | ERR4831117 | HR-TB | None | ERR294248 | HR-TB | None | ERR323036 | HR-TB | None | SRR6831950 | Other | lineage4.3.3 | None | ERR323041 | HR-TB | None | ERR5311090 | HR-TB | None | ERR323038 | HR-TB | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR5311099 | HR-TB | None | ERR5311077 | RR-TB | La1.8.1 | None | ERR5311081 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323055 | HR-TB | None | ERR323063 | HR-TB | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None |
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