lineage | Count |
---|---|
lineage4.8 | 3 |
lineage6 | 2 |
lineage4.6.2.2 | 3 |
lineage6.1.1 | 2 |
lineage6.1.3 | 1 |
96 | |
lineage2.2.1 | 15 |
lineage3.1.2.2;lineage3.1.2.1 | 1 |
lineage4 | 75 |
lineage2.2.1.1 | 4 |
lineage2.2.1.2 | 2 |
lineage1.1.1 | 1 |
lineage4.9 | 31 |
lineage3 | 6 |
La1.8.1 | 1 |
lineage7;lineage2.2.1.2 | 1 |
lineage2.2 | 5 |
lineage9;lineage3.1 | 1 |
lineage4.9;lineage4.6.3 | 1 |
lineage4.9;lineage4.8.1;lineage4.1.1 | 1 |
lineage4.3.4 | 2 |
lineage4.3.4.2.1 | 4 |
lineage4.1.1.2 | 1 |
lineage4.1 | 2 |
lineage4.2.1 | 1 |
lineage4.3.4.1 | 3 |
lineage4.3.2.1 | 1 |
La2 | 1 |
lineage4.1.2 | 1 |
lineage4.4.2 | 1 |
lineage4.1.1.3 | 1 |
lineage4.3.4.1;La1.7 | 1 |
lineage4;lineage3.1 | 1 |
La1.2 | 1 |
La1 | 1 |
lineage3.1.2 | 1 |
lineage4.5 | 1 |
lineage1.1.3.1 | 1 |
lineage1.1.2 | 1 |
spoligotype | Count |
---|---|
None | 278 |
ID | Drug resistance | Lineage | Country iso2 | ERR9786639 | Sensitive | lineage4.8 | None | ERR9787076 | Other | lineage6 | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | ERR9787014 | Other | lineage6.1.1 | None | ERR9787153 | Other | lineage6.1.3 | None | ERR987722 | HR-TB | None | SRR10808668 | Sensitive | lineage2.2.1 | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | SRR10808399 | Sensitive | lineage4 | None | SRR10809074 | Sensitive | lineage4 | None | SRR10808805 | Sensitive | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1172310 | HR-TB | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR1175127 | Sensitive | lineage2.2.1.2 | None | SRR1174897 | HR-TB | None | SRR1180172 | Other | lineage2.2.1 | None | SRR1181328 | Other | lineage2.2.1 | None | SRR1180270 | Other | lineage2.2.1 | None | SRR1181091 | Other | lineage2.2.1.1 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1184024 | Other | lineage2.2.1.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR1183145 | Other | lineage2.2.1 | None | SRR14782405 | HR-TB | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | SRR16157123 | Other | lineage4.9 | None | SRR15014682 | MDR-TB | lineage4.8 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR17832802 | HR-TB | lineage3 | None | SRR1791747 | Other | La1.8.1 | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR20970016 | Other | lineage2.2 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR25827418 | Pre-XDR-TB | lineage9;lineage3.1 | None | SRR26159047 | Other | lineage4.9;lineage4.6.3 | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | ERR11082350 | MDR-TB | lineage4.6.2.2 | None | SAMN02585910 | Other | lineage2.2.1 | None | ERR176778 | HR-TB | None | ERR176779 | HR-TB | None | ERR779852 | Sensitive | lineage4.9;lineage4.8.1;lineage4.1.1 | None | ERR161039 | Sensitive | lineage4.3.4 | None | SRR3675488 | HR-TB | None | SRR3675222 | Other | None | ERR181744 | HR-TB | None | SRR3675209 | Sensitive | lineage4.9 | None | ERR181824 | HR-TB | lineage4 | None | SRR3675501 | HR-TB | None | SRR3675234 | Other | None | SRR3675265 | Other | lineage4 | None | SRR3675246 | Sensitive | lineage4 | None | ERR176518 | Sensitive | lineage4.3.4.2.1 | None | ERR176740 | HR-TB | None | SRR3675280 | HR-TB | lineage4.9 | None | SRR3675284 | HR-TB | lineage4.9 | None | SRR3675270 | HR-TB | None | SRR3675292 | Sensitive | lineage4 | None | ERR176651 | HR-TB | None | ERR181887 | HR-TB | None | SRR3675456 | HR-TB | None | ERR4816213 | Sensitive | lineage3 | None | ERR4816151 | Other | lineage4.8 | None | ERR176751 | HR-TB | None | SRR3675527 | RR-TB | lineage4.9 | None | ERR212034 | HR-TB | None | ERR212125 | HR-TB | lineage4 | None | SRR3675555 | HR-TB | None | ERR212123 | Other | None | ERR212138 | HR-TB | lineage4 | None | ERR212121 | HR-TB | None | ERR4818252 | Other | lineage4.1.1.2 | None | SRR3675571 | HR-TB | None | ERR2446566 | Other | lineage4.1 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | SRR5341453 | Sensitive | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | SRR5341300 | Other | lineage4 | None | ERR1035138 | MDR-TB | None | SRR5341456 | Other | None | ERR6359082 | Other | lineage4.9 | None | SRR5341308 | Sensitive | lineage4 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341330 | HR-TB | None | SRR5341467 | Other | lineage4 | None | SRR5341461 | Sensitive | lineage4 | None | ERR2693238 | HR-TB | lineage4.9 | None | ERR2693230 | Other | None | ERR2693231 | Other | None | SRR5341470 | HR-TB | None | ERR2693227 | Other | lineage4.9 | None | ERR2693257 | Other | None | SRR5535933 | HR-TB | None | SRR6045519 | HR-TB | None | ERR2660539 | Other | lineage4.9 | None | ERR2693254 | Other | None | SRR6044838 | Other | lineage4.9 | None | SRR6046141 | Other | lineage4.9 | None | SRR6045706 | Sensitive | lineage4 | None | SRR6045832 | HR-TB | lineage4.9 | None | SRR6045892 | Sensitive | None | SRR6044876 | Sensitive | lineage4 | None | SRR6044890 | Other | lineage4.9 | None | SRR6044897 | Sensitive | lineage4.9 | None | SRR6045053 | Other | None | SRR6045217 | Other | lineage4 | None | SRR6045233 | HR-TB | None | SRR6045399 | Other | None | SRR6045371 | Sensitive | lineage4.2.1 | None | SRR6046299 | HR-TB | None | SRR6046253 | HR-TB | lineage4.9 | None | SRR6046397 | Other | None | SRR6046382 | HR-TB | lineage2.2.1 | None | SRR6046802 | Other | lineage4 | None | ERR4830353 | Other | None | SRR6046492 | Other | None | SRR6046611 | HR-TB | lineage4.9 | None | SRR6046644 | HR-TB | None | SRR6046897 | Sensitive | lineage4 | None | SRR6046878 | HR-TB | lineage4 | None | SRR6511621 | HR-TB | None | ERR485006 | HR-TB | lineage4.9 | None | ERR323037 | HR-TB | lineage4 | None | SRR6789624 | MDR-TB | lineage4.1 | None | ERR4831117 | HR-TB | None | SRR6981961 | Sensitive | lineage2.2.1 | None | ERR11465353 | Sensitive | lineage4.3.4.1 | None | ERR11465510 | Sensitive | lineage4.3.4.2.1 | None | ERR11465801 | Other | lineage4.3.4.1 | None | ERR502510 | Sensitive | lineage4 | None | ERR294266 | HR-TB | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR502524 | HR-TB | La2 | None | SRR8217918 | HR-TB | None | SRR9970980 | Other | lineage4.1.2 | None | ERR323039 | HR-TB | None | ERR323045 | HR-TB | None | ERR323066 | Sensitive | lineage4 | None | ERR323053 | HR-TB | None | DRR188519 | Other | lineage4.4.2 | None | ERR027293 | Other | None | ERR323085 | Sensitive | lineage4 | None | ERR1035122 | Sensitive | None | ERR11466044 | Other | lineage4.1.1.3 | None | ERR067699 | HR-TB | lineage4 | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | ERR1063857 | HR-TB | None | ERR1063855 | Other | lineage4 | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR133825 | Sensitive | lineage4 | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR1063859 | HR-TB | None | ERR1063896 | Sensitive | None | ERR11465511 | Sensitive | lineage4.3.4.2.1 | None | ERR3283014 | HR-TB | None | ERR137286 | Sensitive | lineage4 | None | ERR11465802 | Other | lineage4.3.4.1;La1.7 | None | ERR3283025 | HR-TB | None | ERR3283021 | HR-TB | None | ERR3283028 | Other | None | ERR3283024 | Other | None | ERR3283032 | HR-TB | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283031 | HR-TB | None | ERR3283040 | HR-TB | None | ERR3283058 | Other | lineage4.9 | None | ERR3283047 | HR-TB | None | ERR3283055 | HR-TB | None | ERR349265 | Sensitive | lineage4 | None | ERR3445504 | HR-TB | None | ERR3445502 | HR-TB | lineage4 | None | ERR3283057 | HR-TB | lineage4 | None | ERR3445501 | HR-TB | None | ERR349264 | Sensitive | lineage4 | None | ERR349299 | Sensitive | lineage4 | None | ERR349298 | Sensitive | lineage4 | None | ERR349296 | Sensitive | lineage4 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR363445 | Sensitive | lineage4 | None | ERR363421 | Sensitive | lineage4 | None | ERR363437 | Sensitive | lineage4 | None | ERR349330 | Sensitive | lineage4 | None | ERR363426 | Sensitive | lineage4 | None | ERR363446 | Sensitive | lineage4 | None | ERR363449 | Sensitive | lineage4 | None | ERR363447 | Sensitive | lineage4 | None | ERR363479 | Sensitive | lineage4 | None | ERR363453 | Sensitive | lineage4 | None | ERR363474 | Sensitive | lineage4 | None | ERR363456 | Sensitive | lineage4 | None | ERR363499 | Sensitive | lineage4 | None | ERR363506 | Sensitive | lineage4 | None | ERR363498 | Sensitive | lineage4 | None | ERR363500 | Sensitive | lineage4 | None | ERR363490 | Sensitive | lineage4 | None | ERR363502 | Sensitive | lineage4 | None | ERR369151 | Sensitive | lineage4.9 | None | ERR363509 | Sensitive | lineage4 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR369158 | Sensitive | lineage4 | None | ERR3797043 | HR-TB | None | ERR369159 | Sensitive | lineage4 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR369162 | Sensitive | lineage4 | None | ERR369163 | Sensitive | lineage4 | None | ERR373945 | HR-TB | lineage4 | None | ERR373947 | Sensitive | lineage4 | None | ERR3797024 | Other | lineage4.9 | None | ERR373946 | Sensitive | lineage4 | None | ERR3797015 | HR-TB | None | ERR3797014 | Other | None | ERR3797017 | Other | None | ERR3797064 | Sensitive | None | ERR3797046 | HR-TB | None | ERR3797044 | Other | None | ERR3797048 | HR-TB | None | ERR3797061 | Other | None | ERR3797063 | HR-TB | None | ERR3797047 | HR-TB | lineage4 | None | ERR3799304 | Other | lineage6.1.1 | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR4024991 | Other | None | ERR400529 | Other | lineage3 | None | ERR3803821 | Other | lineage6 | None | ERR387051 | HR-TB | None | ERR405209 | Sensitive | lineage4 | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR4178226 | Sensitive | lineage4 | None | ERR473332 | Other | lineage4 | None | ERR4769450 | HR-TB | None | ERR4769452 | HR-TB | None | ERR4769457 | Other | lineage4.9 | None | ERR4796929 | Sensitive | lineage4 | None | ERR4769497 | HR-TB | La1.2 | None | ERR4769474 | HR-TB | lineage4 | None | ERR4769521 | HR-TB | None | ERR4796254 | Sensitive | lineage4 | None | ERR4798262 | HR-TB | La1 | None | ERR4797474 | Other | None | ERR4797184 | Sensitive | lineage4 | None | ERR4797264 | Sensitive | None | ERR4798099 | Other | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4798431 | HR-TB | None | ERR4798504 | Other | lineage3 | None | ERR4799378 | Sensitive | lineage4 | None | ERR4799025 | Pre-XDR-TB | None | ERR4799547 | Sensitive | lineage2.2.1 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR6358991 | HR-TB | None | ERR4811493 | HR-TB | None | ERR6358979 | Other | None | ERR6866022 | Other | None | ERR6865502 | Sensitive | lineage4 | None | ERR6359066 | HR-TB | lineage4 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR6866410 | Sensitive | None | ERR6866547 | Sensitive | lineage4 | None | ERR6866639 | Other | None | ERR6866807 | HR-TB | lineage4 | None | ERR736834 | Sensitive | lineage4 | None | ERR736831 | HR-TB | lineage4.9 | None | ERR736835 | HR-TB | None | ERR736837 | Other | lineage4.9 | None | ERR736875 | HR-TB | lineage4 | None | ERR736856 | HR-TB | lineage4 | None | ERR736865 | HR-TB | None | ERR752229 | Other | lineage4.5 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | SRR21733183 | RR-TB | lineage1.1.2 | None | ERR9119669 | HR-TB | None | ERR9786076 | Sensitive | lineage3 | None |
---|