Rv2245 - c.948T>G
Drug resistance types
67 Sensitive
4 RR-TB
138 HR-TB
16 MDR-TB
11 Pre-XDR-TB
0 XDR-TB
98 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 13 |
| lineage2.2 | 6 |
| lineage4.8 | 11 |
| lineage4.3.2.1 | 2 |
| lineage3 | 9 |
| lineage4.1 | 1 |
| 159 | |
| lineage4.1.1 | 5 |
| lineage4.1.3;lineage4.1.2.1;lineage1.1.2 | 2 |
| lineage3.1.1 | 3 |
| lineage4.3.4 | 1 |
| lineage2.1 | 2 |
| lineage4.1.1.3 | 2 |
| lineage4 | 29 |
| lineage4.1.3 | 3 |
| lineage4.9 | 16 |
| lineage4.8;La3 | 1 |
| La1.8.1 | 2 |
| lineage3.1.2 | 2 |
| lineage3.1.2.2 | 1 |
| lineage5.1.3 | 1 |
| lineage2.2.1.1 | 2 |
| La3 | 1 |
| lineage4;lineage1.1 | 1 |
| lineage4.1.2.1 | 13 |
| lineage4.6.4 | 2 |
| lineage4.6.2.2 | 3 |
| lineage4.7 | 2 |
| lineage4.8.2 | 1 |
| lineage4.3.4.1 | 2 |
| lineage4.4.1.1 | 2 |
| lineage1.1 | 1 |
| lineage5.2 | 2 |
| lineage4.3.4.2.1 | 1 |
| La2 | 2 |
| La1.2 | 1 |
| lineage4.3.3 | 5 |
| lineage2.2.1.2 | 1 |
| La1 | 1 |
| La1.7.1 | 1 |
| lineage4.3.4.2 | 2 |
| lineage4;lineage3.1 | 1 |
| La1.3 | 1 |
| lineage2 | 3 |
| lineage1.2.1 | 1 |
| lineage1.1.2 | 2 |
| lineage4.6.1.1 | 1 |
| lineage4.3.2 | 1 |
| lineage6.3.1 | 1 |
| lineage2.2.2 | 3 |
| lineage3.1 | 2 |
| lineage4.5 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 334 |
Geographic prevalence
Country level data for this variant is available for 14 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR20969731 | Other | lineage2.2.1 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR20970016 | Other | lineage2.2 | None | ERR11081258 | Other | lineage4.8 | None | SRR2101429 | Sensitive | lineage4.3.2.1 | None | ERR4815110 | Sensitive | lineage3 | None | ERR11243613 | Sensitive | lineage4.8 | None | SRR3675464 | HR-TB | lineage4.1 | None | ERR4815604 | HR-TB | None | ERR158583 | HR-TB | None | ERR176793 | Other | lineage4.1.1 | None | SRR3675465 | HR-TB | None | SRR6325445 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | SRR3675482 | HR-TB | None | ERR161033 | HR-TB | None | ERR4814683 | Sensitive | lineage4.1.3;lineage4.1.2.1;lineage1.1.2 | None | ERR181744 | HR-TB | None | ERR4815334 | Other | lineage3.1.1 | None | ERR161039 | Sensitive | lineage4.3.4 | None | SRR3675486 | HR-TB | None | SRR3416776 | Other | lineage2.1 | None | SRR3675236 | HR-TB | None | SRR3675221 | HR-TB | None | ERR176643 | HR-TB | None | ERR4815519 | Sensitive | lineage4.1.1.3 | None | SRR3675234 | Other | None | SRR3675311 | Other | None | SRR3675510 | Other | None | ERR176751 | HR-TB | None | ERR4816999 | Other | None | ERR1949966 | Sensitive | lineage4 | None | ERR4816100 | Sensitive | lineage4.1.3;lineage4.1.2.1;lineage1.1.2 | None | ERR552844 | HR-TB | lineage4.1.3 | None | SRR3675545 | HR-TB | None | ERR2027263 | Other | lineage4 | None | ERR4817060 | RR-TB | None | ERR212001 | HR-TB | None | SRR3675550 | Other | None | ERR4816218 | HR-TB | lineage3 | gb | SRR3675558 | HR-TB | None | ERR3275329 | HR-TB | lineage3 | nl | SRR3675571 | HR-TB | None | ERR4816350 | Other | lineage4.9 | gb | ERR212123 | Other | None | SRR3675572 | Other | None | SRR3675574 | HR-TB | None | ERR2229243 | Sensitive | lineage4.8 | None | ERR2229631 | Sensitive | lineage4.8 | None | ERR2229628 | Sensitive | lineage4.8 | None | SRR3742665 | HR-TB | None | ERR2513742 | Pre-XDR-TB | lineage4.8 | gb | ERR2228806 | Sensitive | lineage4.8 | None | ERR4816585 | Other | lineage2.2 | None | ERR502912 | Other | lineage2.2.1 | None | ERR4816656 | HR-TB | None | ERR4817239 | Sensitive | lineage4.1.1 | None | ERR2245409 | HR-TB | lineage3.1.1 | no | ERR2229521 | Sensitive | lineage4.8 | None | ERR234659 | HR-TB | None | ERR4817893 | Other | lineage4.8;La3 | None | ERR4818021 | Other | La1.8.1 | None | ERR4819017 | RR-TB | lineage3 | None | ERR2512453 | Sensitive | lineage3.1.1 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR2512636 | Sensitive | lineage3.1.2 | gb | ERR2513181 | Sensitive | lineage4.8 | gb | ERR4820208 | Sensitive | lineage3.1.2.2 | gb | SRR5007188 | Other | lineage4 | None | ERR4818615 | Other | None | ERR4817658 | Sensitive | lineage5.1.3 | None | ERR4820216 | Sensitive | lineage4.1.1.3 | None | ERR2513902 | Sensitive | lineage2.2.1.1 | None | ERR2513782 | HR-TB | lineage2.2.1 | None | ERR2514178 | Sensitive | La3 | None | ERR4819322 | Other | lineage4;lineage1.1 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR2446493 | Sensitive | lineage4.6.4 | nl | ERR4819426 | Sensitive | lineage4.1.2.1 | gb | ERR4819454 | HR-TB | lineage4.6.2.2 | None | SRR5341418 | Other | None | SRR5341432 | HR-TB | lineage4 | None | ERR4819511 | Sensitive | lineage4.1.2.1 | None | ERR3275593 | Sensitive | lineage4.6.4 | nl | ERR1035138 | MDR-TB | None | ERR2693231 | Other | None | ERR4819932 | Other | lineage4.7 | None | SRR5341333 | HR-TB | None | ERR4820660 | Sensitive | lineage3 | None | ERR2516270 | Pre-XDR-TB | lineage2.2.1 | None | ERR4819781 | Other | lineage2.2.1 | None | ERR2514771 | RR-TB | lineage4.8.2 | None | SRR5341302 | HR-TB | None | SRR5341313 | HR-TB | None | SRR5341315 | Sensitive | None | ERR2515032 | Other | lineage3 | None | SRR5341456 | Other | None | ERR2693254 | Other | None | ERR2517492 | Sensitive | lineage4.1.2.1 | nl | SRR5341470 | HR-TB | None | ERR2693239 | HR-TB | None | ERR2693230 | Other | None | ERR2652981 | Sensitive | lineage4.1.2.1 | None | SRR6045503 | HR-TB | None | ERR4822204 | Sensitive | lineage4.3.4.1 | gb | ERR2693257 | Other | None | SRR6045526 | HR-TB | None | ERR2660518 | Sensitive | None | SRR6045706 | Sensitive | lineage4 | None | SRR6044790 | HR-TB | None | SRR6045327 | HR-TB | None | SRR6044855 | Other | lineage4.9 | None | SRR6045920 | Other | lineage4.1.1 | gb | SRR6045952 | HR-TB | None | ERR2693232 | Other | lineage4.9 | None | SRR6046066 | HR-TB | None | ERR278594 | HR-TB | None | SRR6325442 | HR-TB | None | SRR6046225 | HR-TB | None | SRR6046362 | HR-TB | None | SRR6046397 | Other | None | SRR6046540 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6046460 | HR-TB | None | SRR6046482 | HR-TB | None | SRR6046521 | Other | lineage4.4.1.1 | None | SRR6046514 | HR-TB | None | SRR6046824 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6046644 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6831864 | MDR-TB | lineage2.2.1 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | ERR3077978 | Other | lineage1.1 | None | ERR4872094 | MDR-TB | lineage5.2 | None | SRR6896282 | Sensitive | lineage4.3.2.1 | None | SRR6789625 | Sensitive | lineage4.3.4.2.1 | None | ERR294266 | HR-TB | None | SRR6789626 | Other | None | SRR6797770 | Sensitive | lineage3 | None | SRR6831756 | Sensitive | lineage2.2 | None | ERR294248 | HR-TB | None | SRR6797625 | Sensitive | lineage4.1.1 | None | ERR502524 | HR-TB | La2 | None | ERR5311090 | HR-TB | None | ERR5311081 | HR-TB | None | ERR502532 | HR-TB | None | ERR5311099 | HR-TB | None | ERR502889 | Other | None | SRR7496509 | Other | None | SRR7851367 | Other | La1.2 | None | SRR8217918 | HR-TB | None | SRR7496523 | Other | lineage4.7 | None | SRR7496517 | Other | None | SRR7585435 | Other | lineage4.9 | None | SRR9613539 | MDR-TB | lineage4.3.3 | None | ERR323039 | HR-TB | None | ERR323038 | HR-TB | None | SRR8600313 | Other | La1.8.1 | None | ERR323041 | HR-TB | None | ERR323055 | HR-TB | None | ERR323043 | HR-TB | None | ERR017789 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR323063 | HR-TB | None | ERR323108 | HR-TB | lineage4 | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR067681 | HR-TB | None | ERR1023525 | HR-TB | lineage4 | None | ERR10877869 | MDR-TB | lineage2.2.1 | None | ERR10430693 | Sensitive | La2 | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR1035157 | Other | lineage4.9 | None | ERR133986 | HR-TB | None | ERR323115 | Sensitive | lineage4 | None | ERR3283010 | Other | La1 | None | ERR3283017 | HR-TB | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283024 | Other | None | ERR3283021 | HR-TB | None | ERR3283027 | HR-TB | None | ERR3283032 | HR-TB | None | ERR3283036 | HR-TB | None | ERR3283040 | HR-TB | None | ERR3283043 | Other | lineage4.9 | None | ERR363445 | Sensitive | lineage4 | None | ERR3439432 | Other | None | ERR3587591 | Other | La1.7.1 | None | ERR3468544 | HR-TB | None | ERR363426 | Sensitive | lineage4 | None | ERR369159 | Sensitive | lineage4 | None | ERR363456 | Sensitive | lineage4 | None | ERR363447 | Sensitive | lineage4 | None | ERR363453 | Sensitive | lineage4 | None | ERR363479 | Sensitive | lineage4 | None | ERR363499 | Sensitive | lineage4 | None | ERR363498 | Sensitive | lineage4 | None | ERR363509 | Sensitive | lineage4 | None | ERR373945 | HR-TB | lineage4 | None | ERR3797017 | Other | None | ERR373946 | Sensitive | lineage4 | None | ERR3797014 | Other | None | ERR373947 | Sensitive | lineage4 | None | ERR3797016 | HR-TB | None | ERR3797015 | HR-TB | None | ERR3797036 | HR-TB | None | ERR3797058 | Other | lineage4.9 | None | ERR3797044 | Other | None | ERR3797047 | HR-TB | lineage4 | None | ERR3797069 | Other | None | ERR3797061 | Other | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3797083 | HR-TB | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR403298 | HR-TB | lineage4 | None | ERR400345 | Other | lineage4 | None | ERR4195593 | Sensitive | lineage4.3.4.2 | None | ERR405209 | Sensitive | lineage4 | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR4188350 | HR-TB | None | ERR4772203 | Other | La1.3 | None | ERR4769450 | HR-TB | None | ERR4407463 | HR-TB | None | ERR4769452 | HR-TB | None | ERR4798431 | HR-TB | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4798406 | HR-TB | None | ERR4800341 | Other | lineage3 | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR5336148 | Other | None | ERR4810741 | HR-TB | None | ERR4811022 | HR-TB | None | ERR4811030 | Sensitive | None | ERR4811105 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR5908245 | Sensitive | lineage1.2.1 | None | ERR5864182 | MDR-TB | lineage2.2.1 | None | ERR5864258 | MDR-TB | lineage2.2.1 | None | ERR5908248 | Sensitive | lineage1.1.2 | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR6358837 | HR-TB | None | ERR6358979 | Other | None | ERR702404 | HR-TB | None | ERR6359045 | HR-TB | None | ERR6866547 | Sensitive | lineage4 | None | ERR702406 | HR-TB | None | ERR736839 | Other | None | ERR736835 | HR-TB | None | ERR736874 | HR-TB | None | ERR736865 | HR-TB | None | ERR736867 | HR-TB | None | ERR8976043 | HR-TB | None | ERR8773511 | Sensitive | lineage4.8 | None | ERR9117709 | HR-TB | None | ERR9786224 | Sensitive | lineage4.6.2.2 | None | ERR9117748 | Other | lineage3 | None | ERR9121664 | Sensitive | lineage4.3.4.2 | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9786604 | Other | None | ERR9786569 | Other | lineage4.8 | None | ERR9786617 | Other | lineage4.1.1 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786642 | Other | lineage4.1.2.1 | None | SRR1167384 | Other | lineage4 | None | ERR9786671 | Other | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR9787197 | Other | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9882583 | Sensitive | lineage4.9 | None | SRR069978 | Pre-XDR-TB | lineage2.2.2 | None | SRR069981 | HR-TB | lineage2.2.2 | None | SRR1013664 | Pre-XDR-TB | lineage2.2.2 | None | SRR10808805 | Sensitive | None | SRR1167167 | Pre-XDR-TB | lineage2.2 | None | SRR1169194 | Other | None | SRR1169306 | Other | None | SRR1172728 | MDR-TB | None | SRR1172234 | Other | None | SRR1172310 | HR-TB | None | SRR1172817 | HR-TB | None | SRR1172844 | MDR-TB | lineage4.4.1.1 | None | SRR1173218 | Pre-XDR-TB | lineage4.3.3 | None | SRR1172857 | MDR-TB | None | SRR1173118 | Other | None | SRR1172951 | Other | None | SRR1173166 | Other | lineage4.9 | None | SRR1173363 | HR-TB | None | SRR1173384 | Other | lineage4 | None | SRR1173629 | Other | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173400 | Other | None | SRR1173484 | Other | lineage4 | None | SRR1173778 | Other | None | SRR1173706 | Other | lineage4.9 | None | SRR1173788 | Other | None | SRR1175049 | RR-TB | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1175074 | MDR-TB | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184294 | HR-TB | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1196494 | MDR-TB | None | SRR1184381 | MDR-TB | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1184380 | HR-TB | None | SRR1184388 | Other | None | SRR1196566 | HR-TB | None | SRR1196546 | HR-TB | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | SRR1196677 | HR-TB | lineage2 | None | SRR1196768 | MDR-TB | None | SRR11972361 | Sensitive | lineage2.2 | None | SRR13837614 | Sensitive | lineage4.9 | None | SRR12416824 | HR-TB | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR12142341 | HR-TB | None | SRR14801749 | Sensitive | None | SRR20969677 | HR-TB | lineage2 | None | SRR15368973 | Other | None | SRR1640750 | HR-TB | None | SRR1710057 | Other | lineage2.1 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR19304036 | HR-TB | None | SRR19428611 | HR-TB | lineage4.3.3 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR19303884 | HR-TB | None |
|---|
