Rv0668 - c.1684_1685delTCinsAG
Drug resistance types
10 Sensitive
3 RR-TB
21 HR-TB
9 MDR-TB
2 Pre-XDR-TB
1 XDR-TB
113 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.1;lineage4.9 | 11 |
| M.canetti;lineage4.9;lineage9 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 6 |
| lineage4.9 | 39 |
| La3;lineage4.9 | 4 |
| lineage2.1;lineage6.3 | 2 |
| lineage4.8 | 6 |
| lineage2.2.1 | 16 |
| lineage4.2.2.2 | 1 |
| lineage4.1.2.1 | 10 |
| lineage6.3.1 | 1 |
| 18 | |
| lineage4 | 4 |
| lineage2.2.1.2 | 2 |
| lineage4.1.1.1 | 3 |
| La3;lineage2.1;lineage4.9 | 2 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| La1;lineage4.9 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| lineage4.2;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage4.1.3 | 2 |
| lineage1.1.2 | 1 |
| lineage4.4.1.1 | 2 |
| La1.8.1 | 1 |
| La3;lineage2.2.1 | 1 |
| lineage2.2.1.1 | 2 |
| lineage4.9;lineage7 | 4 |
| lineage4.9;lineage6.3 | 5 |
| La1.2.BCG;La1.8.1 | 1 |
| lineage3 | 1 |
| M.canetti;lineage1 | 1 |
| lineage4.7 | 2 |
| lineage6 | 1 |
| lineage2.2.1;lineage3 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| lineage2.1;lineage4.9;lineage7 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 159 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR3283019 | Other | lineage2.1;lineage4.9 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR3797069 | Other | lineage4.9 | None | SRR26399973 | Other | La3;lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | SRR6046492 | Other | lineage4.9 | None | ERR12015083 | Other | lineage4.8 | None | ERR13267017 | Pre-XDR-TB | lineage2.2.1 | None | ERR2513470 | Other | lineage4.2.2.2 | None | SRR6046066 | Other | lineage4.9 | None | SRR26159043 | Other | lineage4.9 | None | SRR10315551 | Sensitive | lineage2.2.1 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR12416824 | HR-TB | None | ERR3283021 | HR-TB | lineage4.9 | None | ERR3283044 | Other | lineage4 | None | ERR4817893 | Other | lineage4.8 | None | ERR9117721 | HR-TB | None | ERR9786627 | Other | lineage4.1.2.1 | None | SRR1165699 | Other | lineage4.9 | None | SRR18549032 | HR-TB | lineage2.2.1.2 | None | SRR20969708 | HR-TB | lineage2.2.1 | None | SRR29097066 | Sensitive | lineage4.9 | None | SRR25827507 | MDR-TB | lineage4.1.1.1 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR6785413 | Other | lineage2.2.1 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | ERR2229542 | Other | lineage4.8 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | SRR3675311 | Other | lineage4.9 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9787197 | Other | None | ERR4817060 | Other | None | ERR4769497 | Other | La1;lineage4.9 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | ERR4819781 | Other | lineage2.2.1 | None | SRR3675572 | Other | None | SRR3675510 | Sensitive | La3;lineage4.9 | None | SRR23961558 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR4797054 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR11466146 | Other | lineage4.3.4.2.1 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR176793 | Other | lineage4.1.1.1 | None | ERR2027263 | Other | lineage4 | None | SRR6045347 | Other | lineage4.9 | None | ERR4800341 | Other | None | SRR29051077 | Other | lineage4.9 | None | SRR29016901 | Other | La3;lineage4.9 | None | SRR6789626 | Other | None | ERR2660539 | Other | lineage4.9 | None | ERR4769450 | Other | lineage4.9 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | SRR3675280 | RR-TB | lineage4.9 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | SRR29017461 | Other | La3;lineage4.9 | None | SRR20970016 | Other | lineage2.2.1 | None | ERR4816585 | Other | lineage2.2.1 | None | ERR4816466 | HR-TB | lineage4.9 | None | SRR25827687 | MDR-TB | lineage1.1.2 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR29055629 | MDR-TB | lineage2.2.1 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | SRR7240033 | Other | La1.8.1 | None | SRR26937071 | MDR-TB | La3;lineage2.2.1 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | ERR4769452 | Other | lineage4.9 | None | SRR28119752 | Other | lineage4.9 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR7496472 | Other | lineage4.9 | None | SRR7131023 | Other | lineage4.1.2.1 | None | ERR3797070 | Other | lineage4.9 | None | SRR3675221 | Other | lineage4.9 | None | ERR4814352 | Other | lineage2.2.1 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | SRR3675457 | Other | lineage4.9 | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | SRR6046878 | Other | lineage4.9 | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | SRR18213713 | HR-TB | None | ERR387051 | Other | lineage4.9 | None | SRR3675214 | Other | lineage4.9 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR1169194 | Other | lineage4.9 | None | SRR6045053 | Other | lineage4 | None | SRR7496517 | Other | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | ERR11081864 | Other | lineage3 | None | ERR11049020 | Other | lineage4.8 | None | ERR11081257 | Other | lineage4.8 | None | SRR5341330 | Other | lineage4.9 | None | ERR4816999 | Other | None | SRR22424787 | Sensitive | lineage4.9 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | SRR3675582 | Other | lineage4.9 | None | SRR7496471 | Sensitive | lineage4 | None | SRR15014655 | Other | M.canetti;lineage1 | None | ERR4815752 | Other | lineage4.9 | None | ERR9786617 | Other | lineage4.1.1.1 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR4819932 | Sensitive | lineage4.7 | None | ERR9786421 | Other | lineage4.1.2.1 | None | SRR29051093 | Other | lineage4.9 | None | SRR3675236 | Other | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9787165 | Other | lineage6 | None | ERR11081258 | Other | lineage4.8 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | SRR25827497 | XDR-TB | lineage2.2.1;lineage3 | None | SRR6046382 | Sensitive | lineage2.2.1 | None | ERR9117709 | Other | None | ERR3797047 | MDR-TB | lineage4.9 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | SRR7496509 | Other | None | SRR6046521 | Other | lineage4.4.1.1 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | SRR3675456 | RR-TB | lineage4.9;lineage7 | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | SRR29097054 | Sensitive | lineage4.9 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | ERR3804155 | Other | lineage4.1.2.1 | None | SRR29097037 | Other | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | SRR25827682 | Other | None | SRR7496523 | Other | lineage4.7 | None | ERR9786604 | Other | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | SRR29096541 | Other | lineage4.9 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR4407463 | HR-TB | None | ERR4796577 | HR-TB | None | ERR3797029 | Other | lineage4.9 | None | SRR3675275 | Other | lineage4.9 | None | SRR3675270 | Other | lineage4.9 | None |
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