Rv0668 - c.3507C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
58 Sensitive
2 RR-TB
38 HR-TB
14 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
87 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.7 | 2 |
| lineage4.9 | 78 |
| 15 | |
| lineage2.1;lineage4.9 | 8 |
| lineage4.9;lineage6.3 | 5 |
| lineage4.3.3;lineage4.3.4.1 | 1 |
| La3;lineage4 | 1 |
| lineage2.1;lineage6.3 | 2 |
| lineage2.1;lineage4.9;lineage6.3 | 5 |
| lineage6.3.1 | 2 |
| lineage3 | 4 |
| lineage4.1.3 | 2 |
| lineage3.1.2.2 | 1 |
| lineage4.9;lineage9 | 2 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| lineage6.1.1 | 2 |
| lineage4.8 | 3 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| La1.7.1 | 1 |
| lineage2.2.1 | 9 |
| lineage4.1.1.1 | 1 |
| lineage4.3.4.1 | 2 |
| lineage4.1.2 | 2 |
| lineage4.6.3;lineage4.9 | 2 |
| lineage4.3.2;lineage4.9 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| La1.2.BCG;La1.8.1 | 1 |
| lineage4.5 | 1 |
| La3;lineage4.9 | 8 |
| La2;lineage4.9 | 1 |
| lineage1.1;lineage4 | 1 |
| lineage4.2;lineage4.8.1;lineage4.9 | 2 |
| lineage1.1.2 | 1 |
| La1.7;lineage4.9 | 4 |
| lineage4 | 1 |
| lineage4.1 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| lineage4.3 | 1 |
| lineage4.1.2.1 | 5 |
| lineage4.8.1 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| lineage4.2;lineage4.9 | 2 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| La1.7;lineage4.9;lineage7 | 2 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage3.1;lineage4.9 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
| lineage4.1.1.2 | 1 |
| La1;lineage4.9 | 1 |
| lineage3.1.2.1 | 1 |
| lineage1.1.3.1 | 1 |
| lineage4.4.1.1 | 1 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 200 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR7496523 | Other | lineage4.7 | None | ERR926165 | Sensitive | lineage4.9 | None | ERR9786604 | Other | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | SRR29096410 | Other | lineage4.9 | None | SRR6045010 | Sensitive | lineage4.9 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR4407463 | HR-TB | None | ERR926157 | Sensitive | lineage4.9 | None | ERR9786508 | Sensitive | lineage4.3.3;lineage4.3.4.1 | None | SRR1172310 | HR-TB | lineage4.9 | None | ERR3283028 | Other | La3;lineage4 | None | ERR3797069 | Other | lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | ERR4188247 | HR-TB | lineage4.9 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR5341293 | Sensitive | lineage4.9 | None | SRR5341345 | Sensitive | lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | ERR3804162 | Sensitive | lineage6.3.1 | None | ERR4596902 | MDR-TB | lineage3 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR400326 | Other | lineage4.9 | None | ERR9787014 | Other | lineage6.1.1 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | ERR926163 | Other | lineage4.9 | None | ERR212138 | HR-TB | lineage4.9 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827507 | MDR-TB | lineage4.1.1.1 | None | SRR7496509 | Other | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | SRR9970980 | Other | lineage4.1.2 | None | ERR3797046 | HR-TB | lineage4.9 | None | ERR779852 | Sensitive | lineage4.9 | None | SRR1183111 | HR-TB | lineage4.9 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR7496472 | Other | lineage4.9 | None | ERR3797070 | Other | lineage4.9 | None | ERR11252558 | Other | lineage4.6.3;lineage4.9 | None | ERR2514692 | Other | None | ERR9787197 | Other | None | ERR3797087 | Sensitive | lineage4.9 | None | ERR926156 | Sensitive | lineage4.9 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | SRR3675572 | Other | None | SRR3675457 | Other | lineage4.9 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | SRR6045359 | Sensitive | lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR3675522 | Other | lineage4.9 | None | ERR400320 | Sensitive | lineage4.9 | None | SRR7496517 | Other | None | ERR3797048 | Other | La3;lineage4.9 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | ERR4819322 | Other | lineage1.1;lineage4 | None | SRR3675455 | Sensitive | lineage4.9 | None | ERR736848 | Other | lineage4.9 | None | ERR323107 | Sensitive | lineage4.9 | None | SRR3675279 | Sensitive | lineage4.9 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR736856 | Sensitive | lineage4.9 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR3799304 | Other | lineage6.1.1 | None | SRR25207216 | MDR-TB | lineage2.2.1 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR294266 | HR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR4798504 | RR-TB | lineage3 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | SRR29096174 | Sensitive | La1.7;lineage4.9 | None | SRR7496471 | Sensitive | lineage4 | None | ERR4815752 | Other | lineage4.9 | None | ERR3283011 | Other | La3;lineage4.9 | None | ERR4819932 | Sensitive | lineage4.7 | None | ERR9786076 | Sensitive | lineage3 | None | ERR9786440 | Other | lineage4.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | SRR3675236 | Other | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | SRR12416824 | HR-TB | None | ERR9786443 | Sensitive | lineage4.8 | None | SRR12416840 | MDR-TB | lineage4.9 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | ERR867542 | HR-TB | lineage4.3 | None | ERR926159 | Sensitive | lineage4.9 | None | ERR9786627 | Other | lineage4.1.2.1 | None | SRR3675387 | Other | lineage4.9 | None | ERR926154 | Sensitive | lineage4.9 | None | ERR971389 | Sensitive | lineage4.9 | None | ERR3797064 | Other | La3;lineage4.9 | None | ERR1035122 | Sensitive | lineage4.9 | None | SRR3675229 | Sensitive | lineage4.9 | None | SRR29097066 | Sensitive | lineage4.9 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR29096150 | Other | lineage4.9 | None | SRR12708389 | MDR-TB | lineage4.8.1 | None | ERR1034634 | HR-TB | lineage4.9 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | SRR29097026 | Other | lineage4.9 | None | SRR28119752 | Other | lineage4.9 | None | SRR29093901 | MDR-TB | lineage2.2.1 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | ERR9786642 | Other | lineage4.1.2.1 | None | SRR3675221 | Other | lineage4.9 | None | SRR26159047 | Other | lineage4.6.3;lineage4.9 | None | ERR987722 | MDR-TB | None | ERR3797079 | Sensitive | lineage4.9 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | ERR4818615 | Sensitive | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | ERR3283040 | HR-TB | lineage4.9 | None | ERR3797029 | Other | lineage4.9 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | ERR4811030 | Sensitive | lineage4.9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR3675275 | Other | lineage4.9 | None | SRR18213713 | HR-TB | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | SRR3675214 | Other | lineage4.9 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | ERR926162 | Sensitive | lineage4.9 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | SRR6045526 | Other | lineage4.9 | None | ERR926160 | Sensitive | lineage4.9 | None | ERR1035157 | Other | lineage4.9 | None | SRR10809074 | Sensitive | lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | SRR6046066 | Other | lineage4.9 | None | ERR2514390 | Sensitive | lineage3.1;lineage4.9 | None | ERR3283031 | Sensitive | La3;lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | ERR4816999 | Other | None | ERR4818252 | Sensitive | lineage4.1.1.2 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | SRR3675248 | Other | lineage4.9 | None | SRR6046245 | Other | lineage4.9 | None | SRR10808668 | Sensitive | lineage2.2.1 | None | ERR4820854 | Other | lineage4.1.2.1 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR9786569 | Other | lineage4.8 | None | SRR6511621 | Sensitive | lineage4.9 | None | ERR400336 | Sensitive | lineage4.9 | None | ERR9787223 | Sensitive | lineage6.3.1 | None | ERR987729 | HR-TB | lineage3.1.2.1 | None | SRR17832802 | HR-TB | lineage3 | None | ERR4816585 | Other | lineage2.2.1 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | ERR4812155 | Other | lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR926164 | Other | lineage4.9 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR9117709 | Other | None | SRR3675247 | Other | lineage4.9 | None | SRR3675549 | Other | lineage4.9 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR6046521 | Other | lineage4.4.1.1 | None | ERR11465353 | Sensitive | lineage4.3.4.1 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | ERR176740 | Other | lineage4.9 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | SRR3675311 | Other | lineage4.9 | None | ERR3804155 | Other | lineage4.1.2.1 | None | SRR6046026 | RR-TB | lineage4.2;lineage4.9 | None | ERR4810462 | MDR-TB | lineage2.2.1 | cn | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | ERR4814352 | Other | lineage2.2.1 | None | ERR212034 | HR-TB | La1.7;lineage4.9 | None | SRR1180226 | HR-TB | lineage4.9 | None | ERR4819781 | Other | lineage2.2.1 | None |
|---|
