Rv0006 - c.409_411delTTGinsCTC
Drug resistance types
5 Sensitive
1 RR-TB
14 HR-TB
8 MDR-TB
2 Pre-XDR-TB
2 XDR-TB
69 Other
lineage Counts
| lineage | Count |
|---|---|
| 21 | |
| lineage4.9 | 8 |
| lineage4.1.2.1 | 3 |
| lineage4.9;lineage6.3 | 8 |
| lineage2.2.1 | 6 |
| M.canetti;lineage2.2 | 2 |
| lineage2.1;lineage4.9 | 10 |
| lineage4.2;lineage4.9 | 1 |
| La1.2.BCG;La1.8.1 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 3 |
| lineage4.6.1.1 | 2 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| lineage4.6.1 | 1 |
| lineage4.1.1.1 | 2 |
| lineage4 | 3 |
| lineage4.6.2.2 | 2 |
| lineage4.4.1.1 | 2 |
| lineage2.1;lineage6.3 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| lineage2.2.1.2 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| La3;lineage4.9 | 4 |
| lineage4.8 | 2 |
| lineage4.1.3 | 2 |
| lineage4.1 | 1 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| lineage5.2 | 2 |
| lineage2.1 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage3 | 1 |
| lineage4.7 | 1 |
| lineage6.3.1 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 101 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR9786843 | Other | None | SRR3675221 | Other | lineage4.9 | None | ERR234659 | Other | None | ERR9786601 | Other | lineage4.1.2.1 | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | ERR4819781 | Other | lineage2.2.1 | None | ERR9786604 | Other | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR4407463 | HR-TB | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR4815604 | Other | None | ERR4798823 | HR-TB | None | SRR3675214 | Other | lineage4.9 | None | SRR7496517 | Other | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR1199132 | Sensitive | lineage4.6.1.1 | None | SRR6789626 | Other | None | ERR4810741 | HR-TB | None | ERR6358991 | HR-TB | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR6358755 | Other | lineage4.6.1 | None | ERR9786617 | Other | lineage4.1.1.1 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | SRR12416824 | HR-TB | None | ERR3283044 | Other | lineage4 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | SRR7535086 | Other | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | SRR7496509 | Other | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | SRR1184294 | Other | lineage4.9 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR4814352 | Other | lineage2.2.1 | None | SRR3675572 | Other | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | SRR18213713 | HR-TB | None | ERR4797054 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR1165628 | Other | La3;lineage4.9 | None | ERR4799171 | Pre-XDR-TB | lineage4.8 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR9786526 | Other | lineage4.1 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | ERR9786569 | Other | lineage4.8 | None | SRR3675236 | Other | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | SRR29017461 | Other | La3;lineage4.9 | None | ERR9786627 | Other | lineage4.1.2.1 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR176643 | Other | La3;lineage4.9 | None | ERR4816585 | Other | lineage2.2.1 | None | ERR702406 | Other | lineage2.1 | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | SRR7496472 | Other | lineage4.9 | None | ERR3797070 | Other | lineage4.9 | None | ERR9786671 | Other | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | SRR1167384 | Other | La3;lineage4.9 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | SRR1169249 | Other | lineage4.9 | None | ERR176793 | Other | lineage4.1.1.1 | None | ERR2027263 | Other | lineage4 | None | ERR4800341 | Other | None | SRR29050859 | Other | lineage4.9 | None | ERR4811142 | RR-TB | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4797588 | MDR-TB | lineage3 | None | SRR28119753 | Other | lineage4.9 | None | ERR4819932 | Sensitive | lineage4.7 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR9786525 | Other | lineage4 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR987765 | Sensitive | lineage4.6.1.1 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR11465235 | Sensitive | lineage4.3.4.2.1 | None | ERR9117721 | HR-TB | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | ERR9117709 | Other | None | SRR28119811 | Other | lineage2.2.1 | None | SRR6046521 | Other | lineage4.4.1.1 | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | ERR11252558 | Other | lineage4.6.3;lineage4.9 | None |
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