Rv3596c - c.1884G>A
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
7 Sensitive
3 RR-TB
8 HR-TB
5 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
81 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9;lineage7 | 3 |
| lineage2.1;lineage4.9 | 9 |
| lineage4.9 | 23 |
| 16 | |
| lineage4 | 3 |
| lineage4.1.2.1 | 11 |
| lineage4.8 | 4 |
| lineage4.1 | 1 |
| lineage4.1.3 | 2 |
| M.canetti;lineage4.9 | 1 |
| lineage6 | 1 |
| lineage2.2.1 | 7 |
| lineage2.1;lineage6.3 | 2 |
| lineage2.2.1;lineage4.1.2.1 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 4 |
| lineage4.7 | 2 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| lineage4.9;lineage6.3 | 2 |
| La1.7;lineage4.9;lineage6 | 1 |
| La1.7;lineage4.9 | 1 |
| La1.7;M.canetti;lineage4.9 | 2 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage4.1.1.1 | 2 |
| lineage1.1.2 | 1 |
| lineage1.1.1 | 1 |
| La1.2.BCG;La1.8.1 | 1 |
| lineage4.4.1.1 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 105 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | ERR216965 | Sensitive | lineage4.9 | None | SRR6046492 | Other | lineage4.9 | None | SRR6046066 | Other | lineage4.9 | None | SRR6789626 | Other | None | ERR2027263 | Other | lineage4 | None | ERR4815752 | Other | lineage4.9 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9786569 | Other | lineage4.8 | None | ERR9786440 | Other | lineage4.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | SRR6045399 | Other | M.canetti;lineage4.9 | None | SRR12416824 | HR-TB | None | ERR3283044 | Other | lineage4 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786627 | Other | lineage4.1.2.1 | None | ERR9787165 | Other | lineage6 | None | ERR4816466 | HR-TB | lineage4.9 | None | SRR6046382 | Sensitive | lineage2.2.1 | None | ERR9117709 | Other | None | SRR3675549 | Other | lineage4.9 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | ERR11488822 | Pre-XDR-TB | lineage2.2.1;lineage4.1.2.1 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR6046485 | Other | lineage4.9 | None | ERR3804155 | Other | lineage4.1.2.1 | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR1735598 | RR-TB | lineage4.9 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR4818536 | Other | lineage4.9 | None | ERR9786671 | Other | None | ERR4819781 | Other | lineage2.2.1 | None | SRR7496523 | Other | lineage4.7 | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | SRR3675572 | Other | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | SRR3675457 | Other | lineage4.9 | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | SRR3675214 | Other | lineage4.9 | None | SRR7496517 | Other | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | ERR13264981 | Sensitive | La1.7;lineage4.9 | None | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | ERR4800341 | Other | None | ERR4816999 | Other | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | ERR9786617 | Other | lineage4.1.1.1 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR4819932 | Sensitive | lineage4.7 | None | SRR3675236 | Other | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | ERR7821163 | Other | lineage2.2.1 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | SRR25827687 | MDR-TB | lineage1.1.2 | None | SRR7496509 | Other | None | ERR2229542 | Other | lineage4.8 | None | SRR7496472 | Other | lineage4.9 | None | SRR3675221 | Other | lineage4.9 | None | ERR9787197 | Other | None | ERR4817060 | Other | None | SRR21690574 | Other | lineage4.1.2.1 | None | ERR4819462 | Sensitive | lineage4.9 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | ERR9786604 | Other | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | SRR21690362 | Other | lineage1.1.1 | None | ERR4818615 | Sensitive | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | SRR6046611 | Sensitive | lineage4.9 | None | SRR3675275 | Other | lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR11049020 | Other | lineage4.8 | None | ERR4817735 | Other | lineage4.8 | None | SRR3675461 | RR-TB | lineage4.9 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR4816585 | Other | lineage2.2.1 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | SRR6046521 | Other | lineage4.4.1.1 | None | SRR3675456 | RR-TB | lineage4.9;lineage7 | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | SRR3675311 | Other | lineage4.9 | None | ERR11068570 | Other | lineage4 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | ERR3797070 | Other | lineage4.9 | None | ERR4814352 | Other | lineage2.2.1 | None | SRR10808730 | Other | lineage4.9 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | ERR11252736 | Other | lineage4.9 | None | SRR18213713 | HR-TB | None | ERR387051 | Other | lineage4.9 | None | ERR4815604 | Other | None | ERR3797069 | Other | lineage4.9 | None |
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