Rv0006 - c.1485T>C
Drug resistance types
21 Sensitive
6 RR-TB
177 HR-TB
15 MDR-TB
4 Pre-XDR-TB
0 XDR-TB
110 Other
lineage Counts
| lineage | Count |
|---|---|
| La1.8.1 | 3 |
| 169 | |
| lineage4.9 | 44 |
| lineage4.1.1 | 2 |
| lineage2.2.1 | 16 |
| lineage4 | 21 |
| lineage4.9;lineage3.1.2.1 | 1 |
| lineage4.7 | 2 |
| lineage4.8 | 5 |
| lineage4.1.2.1 | 12 |
| lineage3 | 3 |
| lineage4.4.1.1 | 1 |
| lineage2.2.1.1 | 4 |
| lineage3.1 | 3 |
| lineage1.1 | 1 |
| lineage5.2 | 2 |
| lineage4.2.1.1 | 1 |
| La2 | 1 |
| lineage4.4.2 | 1 |
| lineage2.2 | 5 |
| La1 | 2 |
| lineage4.1.3 | 2 |
| lineage6.1.1 | 2 |
| lineage2 | 2 |
| lineage1.1.2 | 2 |
| lineage3.1.2 | 1 |
| lineage4.8;La3 | 1 |
| lineage4.6.1.1 | 1 |
| lineage4.3.4 | 1 |
| lineage4.3.2 | 2 |
| lineage4.1 | 2 |
| lineage4.3.4.2 | 1 |
| lineage4.6.2.2 | 1 |
| lineage6.3.1 | 1 |
| lineage6.1.3 | 1 |
| lineage6 | 1 |
| lineage4.5 | 2 |
| lineage4.3.4.1 | 1 |
| lineage1.1.1 | 1 |
| lineage4.9;La3 | 1 |
| lineage9;lineage3.1 | 1 |
| lineage4.2.1 | 1 |
| lineage4.9;lineage4.6.3 | 1 |
| lineage4.2;La1.7 | 1 |
| lineage6.3;lineage2.2.1 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage3;lineage2.1 | 1 |
| lineage4.1.1.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 333 |
Geographic prevalence
Country level data for this variant is available for 1 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4818021 | Other | La1.8.1 | None | ERR1035162 | Other | None | ERR4818607 | Sensitive | lineage4.9 | None | ERR4818929 | HR-TB | None | ERR234659 | HR-TB | None | ERR2229143 | Other | lineage4.1.1 | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | ERR4819280 | Sensitive | lineage4 | None | SRR5341333 | HR-TB | None | SRR5341456 | Other | None | ERR4819357 | Other | lineage4.9 | None | SRR5341418 | Other | None | ERR2514390 | Sensitive | lineage4.9;lineage3.1.2.1 | None | ERR4819781 | Other | lineage2.2.1 | None | ERR2514692 | Other | None | ERR4819932 | Other | lineage4.7 | None | ERR2514327 | HR-TB | lineage4.8 | None | ERR1035138 | MDR-TB | None | ERR4819933 | Other | lineage4.9 | None | SRR5341470 | HR-TB | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR2693231 | Other | None | ERR2693239 | HR-TB | None | ERR4821053 | Other | lineage3 | None | SRR6045503 | HR-TB | None | ERR2693254 | Other | None | ERR2693230 | Other | None | SRR6045526 | HR-TB | None | ERR2693257 | Other | None | SRR6045952 | HR-TB | None | SRR5535933 | HR-TB | None | SRR6045555 | HR-TB | None | SRR6046141 | Other | lineage4.9 | None | SRR6045832 | HR-TB | lineage4.9 | None | SRR6044790 | HR-TB | None | ERR278594 | HR-TB | None | SRR6046133 | HR-TB | None | SRR6044855 | Other | lineage4.9 | None | SRR6045359 | Sensitive | lineage4.9 | None | SRR6046066 | HR-TB | None | SRR6045327 | HR-TB | None | SRR6045233 | HR-TB | None | SRR6046253 | HR-TB | lineage4.9 | None | SRR6046225 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6046299 | HR-TB | None | SRR6046305 | Other | lineage4.9 | None | SRR6046382 | HR-TB | lineage2.2.1 | None | SRR6046482 | HR-TB | None | SRR6046397 | Other | None | ERR4830353 | Other | None | SRR6325448 | HR-TB | None | SRR6046540 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6046521 | Other | lineage4.4.1.1 | None | SRR6046594 | HR-TB | lineage4 | None | SRR6325447 | HR-TB | None | SRR6046644 | HR-TB | None | SRR6325442 | HR-TB | None | SRR6046824 | HR-TB | None | SRR6079962 | HR-TB | lineage2.2.1.1 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR323034 | HR-TB | lineage3.1 | None | ERR3077978 | Other | lineage1.1 | None | ERR323037 | HR-TB | lineage4 | None | ERR323036 | HR-TB | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR294248 | HR-TB | None | SRR6832178 | HR-TB | lineage4.2.1.1 | None | ERR4831117 | HR-TB | None | SRR6789626 | Other | None | SRR6832787 | RR-TB | lineage2.2.1 | None | ERR502889 | Other | None | ERR502524 | HR-TB | La2 | None | ERR502532 | HR-TB | None | ERR323038 | HR-TB | None | ERR5311099 | HR-TB | None | ERR5311081 | HR-TB | None | SRR8217918 | HR-TB | None | ERR5311090 | HR-TB | None | SRR7496509 | Other | None | SRR7496523 | Other | lineage4.7 | None | SRR7496517 | Other | None | ERR323043 | HR-TB | None | SRR7535086 | Other | None | ERR323039 | HR-TB | None | ERR323041 | HR-TB | None | SRR7796666 | Pre-XDR-TB | lineage2.2.1 | None | ERR323063 | HR-TB | None | ERR323055 | HR-TB | None | ERR323053 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR067681 | HR-TB | None | DRR188519 | Other | lineage4.4.2 | None | ERR1023525 | HR-TB | lineage4 | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR1035157 | Other | lineage4.9 | None | ERR1063857 | HR-TB | None | ERR1063862 | HR-TB | None | ERR1063859 | HR-TB | None | ERR1063858 | HR-TB | None | ERR133986 | HR-TB | None | ERR1063883 | Sensitive | lineage4 | None | ERR323115 | Sensitive | lineage4 | None | ERR3283032 | HR-TB | None | ERR3283010 | Other | La1 | None | ERR3283017 | HR-TB | None | ERR3283027 | HR-TB | None | ERR3283024 | Other | None | ERR5336148 | Other | None | ERR3283040 | HR-TB | None | ERR3283058 | Other | lineage4.9 | None | ERR3283036 | HR-TB | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3439432 | Other | None | ERR3445504 | HR-TB | None | ERR3445503 | HR-TB | None | ERR3445502 | HR-TB | lineage4 | None | ERR3445501 | HR-TB | None | ERR3797017 | Other | None | ERR3797016 | HR-TB | None | ERR3797014 | Other | None | ERR3468544 | HR-TB | None | ERR3797015 | HR-TB | None | ERR3797036 | HR-TB | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797043 | HR-TB | None | ERR4407463 | HR-TB | None | ERR3797082 | Other | lineage4.9 | None | ERR3797083 | HR-TB | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR403298 | HR-TB | lineage4 | None | ERR3797044 | Other | None | ERR3797061 | Other | None | ERR3797069 | Other | None | ERR3797081 | Sensitive | lineage4 | None | ERR3799304 | Other | lineage6.1.1 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR387051 | HR-TB | None | ERR4188350 | HR-TB | None | ERR4769521 | HR-TB | None | ERR4769474 | HR-TB | lineage4 | None | ERR4596910 | Sensitive | lineage4 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR4769457 | Other | lineage4.9 | None | ERR4796577 | MDR-TB | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4798139 | Sensitive | lineage1.1.2 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4798406 | HR-TB | None | ERR4798262 | HR-TB | La1 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4798823 | HR-TB | lineage4 | None | ERR12015083 | Other | lineage4.8;La3 | None | ERR4800341 | Other | lineage3 | None | ERR4811022 | HR-TB | None | ERR4810741 | HR-TB | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR4811105 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR4811493 | HR-TB | None | ERR6358979 | Other | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR6358837 | HR-TB | None | ERR6359045 | HR-TB | None | ERR6358991 | HR-TB | None | ERR6359069 | Other | lineage4.9 | None | ERR6866807 | HR-TB | lineage4 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR702404 | HR-TB | None | ERR702406 | HR-TB | None | ERR736831 | HR-TB | lineage4.9 | None | ERR736865 | HR-TB | None | ERR736837 | Other | lineage4.9 | None | ERR736835 | HR-TB | None | ERR736839 | Other | None | ERR736875 | HR-TB | lineage4 | None | ERR736867 | HR-TB | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR736874 | HR-TB | None | ERR9117709 | HR-TB | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR8976043 | HR-TB | None | ERR9786569 | Other | lineage4.8 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR9786444 | Sensitive | lineage4.8 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR9786440 | Other | lineage4.1 | None | ERR9786604 | Other | None | ERR9786592 | Sensitive | lineage4.3.4.2 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786617 | Other | lineage4.1.1 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9787014 | Other | lineage6.1.1 | None | ERR9787153 | Other | lineage6.1.3 | None | ERR9786671 | Other | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9787165 | Other | lineage6 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | ERR987722 | HR-TB | None | ERR9787197 | Other | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR1169194 | Other | None | SRR1172728 | MDR-TB | None | SRR1172310 | HR-TB | None | SRR1173562 | HR-TB | lineage4 | None | SRR1172817 | HR-TB | None | SRR1173400 | Other | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR1173629 | Other | None | SRR1173706 | Other | lineage4.9 | None | SRR1173778 | Other | None | SRR1174897 | HR-TB | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1180270 | Other | lineage2.2.1 | None | SRR1175513 | Other | lineage4.9 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1181091 | Other | lineage2.2.1.1 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR1184381 | MDR-TB | None | SRR1183144 | Other | lineage2.2.1 | None | SRR1184294 | HR-TB | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1184388 | Other | None | SRR1184380 | HR-TB | None | SRR13423544 | Other | lineage4.5 | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR12142341 | HR-TB | None | SRR12416824 | HR-TB | None | SRR1196546 | HR-TB | None | SRR1196566 | HR-TB | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR13861261 | Sensitive | lineage4.9 | None | SRR13861305 | Other | lineage4.9 | None | SRR13861288 | Other | lineage4.9 | None | SRR13861368 | RR-TB | lineage4.9 | None | SRR13861400 | Other | lineage4.9 | None | SRR13861372 | Other | lineage4.9 | None | SRR13861413 | Sensitive | lineage4.9 | None | SRR13861571 | RR-TB | lineage4.9 | None | SRR13861439 | RR-TB | lineage4.9 | None | SRR13861528 | HR-TB | lineage4.9 | None | SRR13861549 | RR-TB | lineage4.9 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | SRR13861575 | Other | lineage4.9 | None | SRR13861629 | RR-TB | lineage4.9 | None | SRR26399973 | Other | lineage4.9;La3 | None | SRR1640750 | HR-TB | None | SRR18003019 | Other | lineage2.2.1 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR18910194 | HR-TB | lineage2.2 | None | SRR19304036 | HR-TB | None | SRR20969677 | HR-TB | lineage2 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR25827418 | Pre-XDR-TB | lineage9;lineage3.1 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | SRR15368973 | Other | None | SRR19303884 | HR-TB | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR20970016 | Other | lineage2.2 | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | SRR26159047 | Other | lineage4.9;lineage4.6.3 | None | SRR23961559 | Other | lineage4.2;La1.7 | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | ERR4815604 | HR-TB | None | SRR6325445 | HR-TB | None | ERR176778 | HR-TB | None | SRR3675464 | HR-TB | lineage4.1 | None | ERR176779 | HR-TB | None | ERR1035239 | HR-TB | None | SRR3675465 | HR-TB | None | ERR158583 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | SRR3675482 | HR-TB | None | SRR3675488 | HR-TB | None | ERR161033 | HR-TB | None | ERR161034 | Other | lineage4.3.4.2.1 | None | SRR3675486 | HR-TB | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | SRR3675501 | HR-TB | None | ERR4814639 | HR-TB | lineage4 | None | SRR3675236 | HR-TB | None | ERR4815471 | Other | lineage4.9 | None | SRR3675221 | HR-TB | None | SRR3675222 | Other | None | SRR3675234 | Other | None | SRR3675232 | Other | lineage4.1.2.1 | None | ERR2027263 | Other | lineage4 | None | ERR181824 | HR-TB | lineage4 | None | ERR181887 | HR-TB | None | ERR176740 | HR-TB | None | ERR4816964 | Other | lineage4.9 | None | SRR3675280 | HR-TB | lineage4.9 | None | SRR5657521 | Other | La1.8.1 | mx | SRR3675311 | Other | None | ERR176651 | HR-TB | None | SRR3675312 | HR-TB | lineage4 | None | SRR3675456 | HR-TB | None | SRR3675510 | Other | None | ERR4816999 | Other | None | SRR3675545 | HR-TB | None | ERR212001 | HR-TB | None | ERR2229113 | HR-TB | lineage4.8 | None | SRR3675550 | Other | None | SRR3675555 | HR-TB | None | SRR3675574 | HR-TB | None | SRR3675558 | HR-TB | None | SRR3675572 | Other | None | ERR212125 | HR-TB | lineage4 | None | SRR3675571 | HR-TB | None | ERR212138 | HR-TB | lineage4 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR4816585 | Other | lineage2.2 | None | ERR4816466 | HR-TB | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | SRR3742665 | HR-TB | None | ERR4816656 | HR-TB | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR4818710 | Sensitive | lineage4.9 | None | SRR7496472 | Other | None |
|---|
