lineage | Count |
---|---|
lineage4.5 | 2 |
73 | |
lineage4 | 14 |
lineage2.2.1 | 10 |
lineage4.3.4.2 | 9 |
lineage2 | 1 |
lineage4.9;La3 | 1 |
lineage4.1 | 2 |
lineage4.9 | 26 |
lineage6.3;lineage2.2.1 | 1 |
lineage4.1.2.1 | 8 |
lineage4.4.1.1 | 2 |
lineage2.2 | 1 |
La1.8.1 | 1 |
lineage5.1.4 | 1 |
lineage4.2.1 | 1 |
lineage4.9;lineage3.1.2.1 | 1 |
lineage3 | 3 |
lineage4.7 | 2 |
La1 | 1 |
lineage4.1.3 | 2 |
lineage4.8;La3 | 1 |
lineage4.6.1.1 | 1 |
lineage1.1.2 | 1 |
lineage4.1.1 | 1 |
lineage4.8 | 1 |
lineage4.6.2.2 | 1 |
lineage6.1.3 | 1 |
lineage6.3.1 | 1 |
lineage6 | 1 |
spoligotype | Count |
---|---|
None | 171 |
ID | Drug resistance | Lineage | Country iso2 | SRR18213713 | HR-TB | lineage4.5 | None | SRR15368973 | Other | None | SRR19303884 | HR-TB | None | SRR20632814 | Sensitive | lineage4 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR19304036 | HR-TB | None | SRR22179533 | Sensitive | lineage4.3.4.2 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR20969677 | HR-TB | lineage2 | None | SRR26399973 | Other | lineage4.9;La3 | None | SRR22190940 | Sensitive | lineage4.3.4.2 | None | SRR12708416 | Sensitive | lineage4.1 | None | SRR3675473 | Sensitive | lineage4.9 | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | ERR4815604 | HR-TB | None | SRR3675477 | Other | lineage4.9 | None | ERR4814352 | HR-TB | lineage2.2.1 | None | SRR3675465 | HR-TB | None | SRR3675488 | HR-TB | None | SRR3675210 | Sensitive | lineage4.9 | None | SRR3675222 | Other | None | SRR3675501 | HR-TB | None | SRR3675221 | HR-TB | None | SRR3675311 | Other | None | SRR3675232 | Other | lineage4.1.2.1 | None | ERR181824 | HR-TB | lineage4 | None | SRR3675247 | Other | lineage4.9 | None | SRR3675229 | Other | lineage4 | None | SRR3675236 | HR-TB | None | SRR3675280 | HR-TB | lineage4.9 | None | SRR3675279 | Other | None | SRR3675522 | Other | None | SRR3675318 | Other | lineage4.9 | None | SRR3675387 | Sensitive | None | SRR3675456 | HR-TB | None | SRR3675455 | Sensitive | lineage4 | None | SRR3675514 | Sensitive | lineage4.9 | None | ERR2027263 | Other | lineage4 | None | ERR4816999 | Other | None | SRR3675542 | Other | lineage4.9 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR3675547 | Other | lineage4.9 | None | SRR3675548 | Sensitive | lineage4.9 | None | SRR3675577 | Sensitive | lineage4.9 | None | SRR3675555 | HR-TB | None | SRR3675572 | Other | None | SRR7496472 | Other | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | SRR3742665 | HR-TB | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR4816585 | Other | lineage2.2 | None | ERR3275802 | Sensitive | lineage4.3.4.2 | nl | ERR3275895 | Sensitive | lineage4.3.4.2 | nl | ERR234659 | HR-TB | None | ERR4818021 | Other | La1.8.1 | None | ERR3275773 | Sensitive | lineage4.3.4.2 | nl | ERR4818394 | Other | lineage4.9 | None | ERR3276098 | Sensitive | lineage4.3.4.2 | nl | ERR3275829 | Sensitive | lineage4.3.4.2 | nl | ERR3276169 | Sensitive | lineage4.3.4.2 | nl | ERR2513283 | Other | lineage5.1.4 | None | ERR3276237 | Sensitive | lineage4.3.4.2 | nl | ERR2512770 | Other | lineage4.2.1 | None | ERR4818615 | Other | None | ERR4819781 | Other | lineage2.2.1 | None | SRR5341396 | Other | lineage4 | None | ERR4819280 | Sensitive | lineage4 | None | ERR2514390 | Sensitive | lineage4.9;lineage3.1.2.1 | None | ERR4820335 | Other | lineage4.1.2.1 | None | SRR5341437 | Sensitive | lineage4.9 | None | ERR2514552 | Sensitive | lineage3 | None | SRR5341296 | Sensitive | lineage4.9 | None | SRR5341302 | HR-TB | None | SRR5341323 | Sensitive | lineage4 | None | ERR4819932 | Other | lineage4.7 | None | SRR5341333 | HR-TB | None | SRR6045519 | HR-TB | None | SRR5341345 | Sensitive | lineage4.9 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR2660539 | Other | lineage4.9 | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR6044790 | HR-TB | None | SRR6046305 | Other | lineage4.9 | None | SRR6044855 | Other | lineage4.9 | None | SRR6046066 | HR-TB | None | SRR6046245 | Other | lineage4.9 | None | ERR4831638 | Sensitive | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6046382 | HR-TB | lineage2.2.1 | None | ERR4830353 | Other | None | SRR6046521 | Other | lineage4.4.1.1 | None | SRR6046540 | HR-TB | None | ERR323043 | HR-TB | None | SRR7496509 | Other | None | SRR7496517 | Other | None | SRR7535086 | Other | None | SRR6789626 | Other | None | ERR502532 | HR-TB | None | ERR502943 | HR-TB | None | SRR7496523 | Other | lineage4.7 | None | SRR9971114 | Other | lineage2.2.1 | None | ERR3797069 | Other | None | ERR1034652 | Other | None | ERR1035157 | Other | lineage4.9 | None | ERR1063862 | HR-TB | None | ERR1063858 | HR-TB | None | ERR3283010 | Other | La1 | None | ERR3283027 | HR-TB | None | ERR5336148 | Other | None | ERR3283036 | HR-TB | None | ERR387051 | HR-TB | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR4797350 | Sensitive | lineage4.9 | None | ERR400326 | Sensitive | lineage4 | None | ERR400336 | Sensitive | lineage4 | None | ERR400345 | Other | lineage4 | None | ERR4797313 | HR-TB | None | ERR400320 | Sensitive | lineage4 | None | ERR4407463 | HR-TB | None | ERR4810741 | HR-TB | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4800341 | Other | lineage3 | None | ERR12015083 | Other | lineage4.8;La3 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR4811022 | HR-TB | None | ERR4811105 | HR-TB | None | ERR4811030 | Sensitive | None | ERR702406 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR4811493 | HR-TB | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR4812155 | Sensitive | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR736874 | HR-TB | None | ERR9117709 | HR-TB | None | ERR736867 | HR-TB | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786617 | Other | lineage4.1.1 | None | ERR9786440 | Other | lineage4.1 | None | ERR9786569 | Other | lineage4.8 | None | ERR9786604 | Other | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786671 | Other | None | ERR9787153 | Other | lineage6.1.3 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR9787165 | Other | lineage6 | None | ERR9787197 | Other | None | SRR1172728 | MDR-TB | None | SRR1173778 | Other | None | SRR1172817 | HR-TB | None | SRR1173400 | Other | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173118 | Other | None | SRR1173629 | Other | None | SRR1175508 | Other | lineage4.9 | None | SRR1175496 | HR-TB | lineage4.9 | None | SRR1175500 | MDR-TB | lineage4 | None | SRR1175507 | MDR-TB | lineage4 | None | SRR1184380 | HR-TB | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184381 | MDR-TB | None | SRR12416824 | HR-TB | None | SRR1196546 | HR-TB | None | SRR1196566 | HR-TB | None | SRR12142341 | HR-TB | None |
---|