Rv0006 - c.1509A>G
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
44 Sensitive
2 RR-TB
21 HR-TB
7 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
98 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 38 |
| La1.7;M.canetti;lineage4.9 | 2 |
| 22 | |
| lineage2.2.1 | 14 |
| lineage4.1.2.1 | 6 |
| lineage4.3.4.2 | 21 |
| lineage2.1;lineage4.9 | 10 |
| La3;M.canetti;lineage2.2.1 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 1 |
| La3;lineage4.9 | 2 |
| lineage4.3.2.1 | 1 |
| lineage4 | 1 |
| lineage4.1.1.1 | 1 |
| lineage2.2.2;lineage4 | 1 |
| lineage6.1.3 | 1 |
| La3;lineage2.2.2 | 1 |
| lineage4.9;lineage6.3 | 4 |
| lineage6 | 1 |
| M.canetti;lineage4.9 | 2 |
| lineage4.4.1.1 | 2 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 5 |
| lineage3 | 2 |
| lineage4.7 | 2 |
| lineage1;lineage4.9 | 1 |
| La1.7 | 2 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.2.1;lineage4 | 1 |
| lineage2.1;lineage6.3 | 2 |
| La1.7;lineage4.9 | 5 |
| lineage4.8 | 3 |
| lineage4.1.3 | 2 |
| lineage4.6.1 | 1 |
| lineage6.3.1 | 1 |
| lineage2.1 | 2 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage1.1.1;lineage4 | 1 |
| lineage4.1.1.3;lineage4.9 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| La1.2.BCG;La1.8.1 | 1 |
| lineage4.5 | 1 |
| lineage3.1;lineage4.9 | 1 |
| lineage4.1 | 1 |
| lineage4.3 | 1 |
| lineage5.1.4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 174 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4811493 | HR-TB | lineage4.9 | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | ERR9787197 | Other | None | ERR234659 | Other | None | ERR4797313 | Sensitive | lineage2.2.1 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | ERR13285361 | Sensitive | lineage4.3.4.2 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | ERR4811030 | Sensitive | lineage4.9 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR26399973 | Other | La3;lineage4.9 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | SRR3675279 | Sensitive | lineage4.9 | None | ERR3276098 | Sensitive | lineage4.3.4.2 | nl | ERR3275802 | Sensitive | lineage4.3.4.2 | nl | SRR21690673 | Sensitive | lineage4.3.4.2 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | ERR3276169 | Sensitive | lineage4.3.4.2 | nl | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR2027263 | Other | lineage4 | None | ERR400345 | Other | lineage4.9 | None | SRR3675461 | RR-TB | lineage4.9 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4811075 | Other | None | SRR28119753 | Other | lineage4.9 | None | ERR9786617 | Other | lineage4.1.1.1 | None | SRR29093105 | Other | lineage2.2.2;lineage4 | None | ERR9787153 | Other | lineage6.1.3 | None | ERR13245558 | MDR-TB | La3;lineage2.2.2 | None | ERR400326 | Other | lineage4.9 | None | ERR400336 | Sensitive | lineage4.9 | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | SRR29017461 | Other | La3;lineage4.9 | None | ERR9787165 | Other | lineage6 | None | SRR6046564 | Sensitive | lineage4.9 | None | SRR1165699 | Other | lineage4.9 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675387 | Other | lineage4.9 | None | SRR3675549 | Other | lineage4.9 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | SRR6046521 | Other | lineage4.4.1.1 | None | SRR6044819 | Sensitive | lineage4.9 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | SRR22179533 | Sensitive | lineage4.3.4.2 | None | SRR29050928 | Other | lineage4.9 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR9786642 | Other | lineage4.1.2.1 | None | SRR20632814 | Sensitive | lineage4.9 | None | SRR28044634 | Other | lineage3 | None | SRR6789621 | Other | lineage4.9 | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR7496523 | Other | lineage4.7 | None | SRR3675457 | Other | lineage4.9 | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675222 | Other | La1.7 | None | SRR21690930 | Sensitive | lineage4.3.4.2 | None | SRR3675275 | Other | lineage4.9 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR400320 | Sensitive | lineage4.9 | None | ERR3797069 | Other | lineage4.9 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | SRR7496517 | Other | None | SRR22190940 | Sensitive | lineage4.3.4.2 | None | SRR3675455 | Sensitive | lineage4.9 | None | ERR3275773 | Sensitive | lineage4.3.4.2 | nl | SRR21690827 | Sensitive | lineage4.3.4.2 | None | ERR4820335 | Other | lineage4.1.2.1 | None | ERR3275895 | Sensitive | lineage4.3.4.2 | nl | SRR3675267 | Other | La1.7;lineage4.9 | None | ERR12015083 | Other | lineage4.8 | None | SRR5341345 | Sensitive | lineage4.9 | None | SRR15368973 | Other | lineage4.9 | None | ERR4800341 | Other | None | ERR4816999 | Other | None | ERR4810741 | HR-TB | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR4811142 | RR-TB | None | ERR6358755 | Other | lineage4.6.1 | None | ERR4797588 | MDR-TB | lineage3 | None | SRR6046245 | Other | lineage4.9 | None | ERR9786569 | Other | lineage4.8 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR12142341 | HR-TB | lineage2.2.1 | None | SRR12416824 | HR-TB | None | SRR20969677 | HR-TB | lineage2.1 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | SRR3675247 | Other | lineage4.9 | None | SRR3675441 | Other | lineage4.9 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR28119811 | Other | lineage2.2.1 | None | SRR7496509 | Other | None | SRR3675488 | Other | La1.7;lineage4.9 | None | SRR29097085 | Sensitive | lineage4.8 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR21689843 | Sensitive | lineage4.3.4.2 | None | SRR7496472 | Other | lineage4.9 | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | SRR3675221 | Other | lineage4.9 | None | SRR28119805 | Other | lineage4.9 | None | ERR4814352 | Other | lineage2.2.1 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | ERR9786604 | Other | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | ERR1063858 | HR-TB | lineage4.9 | None | SRR21691107 | Sensitive | lineage4.3.4.2 | None | ERR4407463 | HR-TB | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | SRR18213713 | HR-TB | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | ERR4815604 | Other | None | SRR3675214 | Other | lineage4.9 | None | SRR3675522 | Other | lineage4.9 | None | SRR3675492 | Other | La1.7;lineage4.9 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR21690127 | Sensitive | lineage4.3.4.2 | None | SRR21690711 | Sensitive | lineage4.3.4.2 | None | SRR21690180 | Sensitive | lineage4.3.4.2 | None | SRR21691048 | Sensitive | lineage4.3.4.2 | None | ERR3275829 | Sensitive | lineage4.3.4.2 | nl | ERR3276237 | Sensitive | lineage4.3.4.2 | nl | ERR4830353 | Other | La1.7 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR2514390 | Sensitive | lineage3.1;lineage4.9 | None | ERR4811105 | HR-TB | None | SRR6789626 | Other | None | ERR13285500 | Sensitive | lineage4.3.4.2 | None | ERR2660539 | Other | lineage4.9 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR4819932 | Sensitive | lineage4.7 | None | SRR29093909 | Other | lineage4.9 | None | ERR9786440 | Other | lineage4.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR1063862 | HR-TB | lineage4.9 | None | SRR3675236 | Other | None | ERR867542 | HR-TB | lineage4.3 | None | SRR21689502 | Sensitive | lineage4.3.4.2 | None | ERR9117721 | HR-TB | None | SRR7535086 | Other | None | ERR4816585 | Other | lineage2.2.1 | None | SRR3675229 | Sensitive | lineage4.9 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR702406 | Other | lineage2.1 | None | SRR6046382 | Sensitive | lineage2.2.1 | None | ERR1063849 | HR-TB | lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | ERR9117709 | Other | None | SRR29055629 | MDR-TB | lineage2.2.1 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | SRR12708416 | Sensitive | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR2513283 | Sensitive | lineage5.1.4 | None |
|---|
