lineage | Count |
---|---|
70 | |
lineage2.2.1 | 8 |
lineage1.2.1.1 | 1 |
lineage4 | 15 |
lineage4.9 | 11 |
lineage2.1 | 1 |
lineage2.2 | 1 |
lineage4.4.1.1 | 2 |
lineage3.1.3 | 1 |
La1.8.1 | 1 |
lineage4.8 | 3 |
lineage4.1.2 | 1 |
lineage3 | 3 |
lineage4;lineage1.1 | 1 |
lineage4.1.2.1 | 9 |
lineage4.9;lineage3.1.2.1 | 1 |
lineage4.7 | 2 |
lineage4.2.1.1 | 1 |
lineage4.1 | 1 |
La1.6 | 1 |
lineage4.4.1.2 | 1 |
La1 | 1 |
lineage4.1.3 | 2 |
lineage4.6.1.1 | 1 |
lineage4.3.4 | 1 |
lineage1.1.2 | 1 |
lineage4.3.2 | 1 |
lineage4.6.2.2 | 1 |
lineage6 | 1 |
lineage6.3.1 | 1 |
lineage2.2.1.1 | 2 |
lineage4.5 | 1 |
lineage7;lineage2.2.1.2 | 1 |
lineage2 | 1 |
spoligotype | Count |
---|---|
None | 150 |
ID | Drug resistance | Lineage | Country iso2 | SRR3675465 | HR-TB | None | ERR176779 | HR-TB | None | ERR4815604 | HR-TB | None | ERR176778 | HR-TB | None | SRR3675311 | Other | None | ERR158583 | HR-TB | None | SRR3675221 | HR-TB | None | SRR3675236 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | ERR4814734 | Other | lineage1.2.1.1 | None | ERR181824 | HR-TB | lineage4 | None | ERR181887 | HR-TB | None | ERR212034 | HR-TB | None | ERR176651 | HR-TB | None | ERR4815752 | Other | lineage4.9 | None | SRR3675550 | Other | None | ERR4816999 | Other | None | SRR5341422 | HR-TB | lineage2.1 | None | ERR212125 | HR-TB | lineage4 | None | SRR3675572 | Other | None | SRR3675571 | HR-TB | None | ERR212138 | HR-TB | lineage4 | None | ERR4816585 | Other | lineage2.2 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | SRR7496472 | Other | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR2513121 | Sensitive | lineage3.1.3 | None | ERR4818021 | Other | La1.8.1 | None | ERR2510820 | Other | lineage4.8 | None | ERR4818615 | Other | None | ERR1035162 | Other | None | ERR4818347 | Other | lineage4.1.2 | None | SRR5341408 | Sensitive | lineage3 | None | SRR5341373 | HR-TB | lineage4 | None | ERR4819322 | Other | lineage4;lineage1.1 | None | SRR5007188 | Other | lineage4 | None | SRR5341400 | HR-TB | lineage4 | None | ERR4820335 | Other | lineage4.1.2.1 | None | SRR5341432 | HR-TB | lineage4 | None | SRR5341418 | Other | None | ERR2514390 | Sensitive | lineage4.9;lineage3.1.2.1 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR5341293 | HR-TB | lineage4 | None | SRR6044855 | Other | lineage4.9 | None | SRR5341313 | HR-TB | None | SRR5341315 | Sensitive | None | ERR4820854 | Other | lineage4.1.2.1 | None | SRR6045892 | Sensitive | None | ERR4819932 | Other | lineage4.7 | None | SRR5341333 | HR-TB | None | SRR5341330 | HR-TB | None | SRR6044876 | Sensitive | lineage4 | None | SRR6046305 | Other | lineage4.9 | None | SRR6046210 | Other | lineage4 | None | SRR6046066 | HR-TB | None | SRR6046540 | HR-TB | None | SRR6046397 | Other | None | SRR6046482 | HR-TB | None | SRR6046521 | Other | lineage4.4.1.1 | None | SRR6046492 | Other | None | SRR6046824 | HR-TB | None | SRR6785267 | Other | lineage2.2.1 | None | ERR4831117 | HR-TB | None | SRR7535086 | Other | None | SRR6832178 | HR-TB | lineage4.2.1.1 | None | ERR502532 | HR-TB | None | ERR502889 | Other | None | SRR7131096 | Other | lineage4.8 | None | SRR6789624 | MDR-TB | lineage4.1 | None | SRR6981961 | Sensitive | lineage2.2.1 | None | ERR11268038 | Other | La1.6 | None | SRR7496509 | Other | None | SRR7496517 | Other | None | SRR7496523 | Other | lineage4.7 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR323043 | HR-TB | None | ERR1035157 | Other | lineage4.9 | None | ERR067681 | HR-TB | None | ERR11465232 | Sensitive | lineage4.1.2.1 | None | ERR1063858 | HR-TB | None | ERR1063862 | HR-TB | None | ERR1063859 | HR-TB | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR3283010 | Other | La1 | None | ERR133986 | HR-TB | None | ERR3283013 | MDR-TB | lineage4 | None | ERR3283041 | Other | lineage4.9 | None | ERR3283027 | HR-TB | None | ERR3283025 | HR-TB | None | ERR3283036 | HR-TB | None | ERR3283055 | HR-TB | None | ERR3283051 | Other | lineage4.9 | None | ERR3445501 | HR-TB | None | ERR3439432 | Other | None | ERR3797046 | HR-TB | None | ERR3445502 | HR-TB | lineage4 | None | ERR3445503 | HR-TB | None | ERR5336148 | Other | None | ERR3797058 | Other | lineage4.9 | None | ERR3797086 | Other | lineage4.9 | None | ERR3797069 | Other | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR4769474 | HR-TB | lineage4 | None | ERR403298 | HR-TB | lineage4 | None | ERR4800341 | Other | lineage3 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4798406 | HR-TB | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR736867 | HR-TB | None | ERR4810741 | HR-TB | None | ERR4811493 | HR-TB | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR702406 | HR-TB | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR6359045 | HR-TB | None | ERR736875 | HR-TB | lineage4 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9117709 | HR-TB | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR9786604 | Other | None | ERR9786569 | Other | lineage4.8 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | ERR9787165 | Other | lineage6 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR9787197 | Other | None | SRR1184372 | MDR-TB | None | SRR1173118 | Other | None | SRR1173788 | Other | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1172728 | MDR-TB | None | SRR1172817 | HR-TB | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR12416824 | HR-TB | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR19304036 | HR-TB | None | SRR19303884 | HR-TB | None | SRR20969677 | HR-TB | lineage2 | None | SRR26399490 | Sensitive | lineage4.9 | None |
---|