lineage | Count |
---|---|
lineage4 | 33 |
63 | |
lineage4.9 | 21 |
lineage2.2 | 1 |
lineage4;lineage2 | 1 |
lineage4.8 | 2 |
lineage2.2.1 | 10 |
La1.8.1 | 1 |
lineage4.9;lineage3.1.2.1 | 1 |
lineage4.1.2.1 | 11 |
lineage4.9;lineage2.1 | 1 |
lineage4.7 | 2 |
lineage4.4.1.1 | 1 |
lineage4.2.1 | 1 |
lineage4.1.2 | 1 |
lineage4.3.2.1 | 1 |
lineage4.4.1.1;lineage1.2.2.1 | 1 |
La1 | 1 |
lineage4.1.3 | 2 |
lineage4.8;La3 | 1 |
lineage3 | 1 |
lineage1.1.2 | 1 |
lineage4.3.2 | 1 |
lineage4.1 | 1 |
lineage4.1.1 | 1 |
lineage4.6.2.2 | 1 |
lineage6 | 1 |
lineage2.2.1.2 | 1 |
lineage4.5 | 1 |
lineage2 | 1 |
lineage6.3;lineage2.2.1 | 1 |
lineage4.9;La3 | 1 |
spoligotype | Count |
---|---|
None | 168 |
ID | Drug resistance | Lineage | Country iso2 | ERR2027263 | Other | lineage4 | None | ERR4816999 | Other | None | SRR3742665 | HR-TB | None | SRR3675572 | Other | None | SRR5341384 | Sensitive | lineage4.9 | None | ERR4816585 | Other | lineage2.2 | None | SRR7496472 | Other | None | ERR4816762 | Other | lineage4;lineage2 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR4815815 | Sensitive | lineage4 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | SRR5341453 | Sensitive | None | ERR234659 | HR-TB | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | ERR4818021 | Other | La1.8.1 | None | ERR4818394 | Other | lineage4.9 | None | ERR4818615 | Other | None | SRR5341308 | Sensitive | lineage4 | None | ERR4819280 | Sensitive | lineage4 | None | SRR5341425 | Other | lineage4 | None | ERR2514390 | Sensitive | lineage4.9;lineage3.1.2.1 | None | SRR5341300 | Other | lineage4 | None | SRR5341303 | RR-TB | lineage4 | None | SRR5341302 | HR-TB | None | SRR5341387 | Other | lineage4 | None | ERR4820335 | Other | lineage4.1.2.1 | None | ERR4819740 | Sensitive | lineage4.9 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR5341299 | Sensitive | lineage4 | None | SRR6046141 | Other | lineage4.9 | None | SRR5341333 | HR-TB | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341366 | Sensitive | lineage4 | None | SRR5341469 | Other | lineage4 | None | ERR502511 | Sensitive | lineage4.9;lineage2.1 | None | ERR4819932 | Other | lineage4.7 | None | ERR4820854 | Other | lineage4.1.2.1 | None | SRR6045832 | HR-TB | lineage4.9 | None | SRR6046521 | Other | lineage4.4.1.1 | None | SRR6044780 | Other | lineage4.9 | None | SRR6044855 | Other | lineage4.9 | None | SRR6045010 | Other | lineage4 | None | SRR6046066 | HR-TB | None | SRR6046305 | Other | lineage4.9 | None | SRR6044790 | HR-TB | None | SRR6045359 | Sensitive | lineage4.9 | None | SRR6046259 | Sensitive | lineage4.9 | None | ERR502510 | Sensitive | lineage4 | None | SRR6046540 | HR-TB | None | SRR6511621 | HR-TB | None | ERR323037 | HR-TB | lineage4 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | SRR6785262 | Sensitive | lineage4.2.1 | None | SRR6789626 | Other | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR1035122 | Sensitive | None | ERR502532 | HR-TB | None | SRR7496517 | Other | None | SRR7496523 | Other | lineage4.7 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR7496509 | Other | None | SRR7535082 | Sensitive | lineage4 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR323043 | HR-TB | None | ERR323066 | Sensitive | lineage4 | None | ERR323085 | Sensitive | lineage4 | None | ERR1063896 | Sensitive | None | ERR1035157 | Other | lineage4.9 | None | ERR137286 | Sensitive | lineage4 | None | ERR11465714 | Other | lineage4.4.1.1;lineage1.2.2.1 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3283036 | HR-TB | None | ERR3283010 | Other | La1 | None | ERR5336148 | Other | None | ERR3283027 | HR-TB | None | ERR3797069 | Other | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR4407463 | HR-TB | None | ERR4024991 | Other | None | ERR473323 | HR-TB | lineage4.9 | None | ERR4596910 | Sensitive | lineage4 | None | ERR4769457 | Other | lineage4.9 | None | ERR4769442 | HR-TB | lineage4 | None | ERR4797184 | Sensitive | lineage4 | None | ERR4796254 | Sensitive | lineage4 | None | ERR4797474 | Other | None | ERR4797264 | Sensitive | None | ERR4799378 | Sensitive | lineage4 | None | ERR4798823 | HR-TB | lineage4 | None | ERR4798099 | Other | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR12015083 | Other | lineage4.8;La3 | None | ERR4800341 | Other | lineage3 | None | ERR4810741 | HR-TB | None | ERR4811022 | HR-TB | None | ERR4811105 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR6358951 | HR-TB | lineage4 | None | ERR736867 | HR-TB | None | ERR6866022 | Other | None | ERR702406 | HR-TB | None | ERR736831 | HR-TB | lineage4.9 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR6866639 | Other | None | ERR736834 | Sensitive | lineage4 | None | ERR736837 | Other | lineage4.9 | None | ERR736872 | Sensitive | lineage4 | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR751326 | Sensitive | lineage4 | None | ERR736874 | HR-TB | None | ERR9117709 | HR-TB | None | ERR9117805 | Other | lineage4.3.2 | None | ERR9786569 | Other | lineage4.8 | None | ERR9634265 | Sensitive | None | ERR9786440 | Other | lineage4.1 | None | ERR9786604 | Other | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786617 | Other | lineage4.1.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | ERR9787165 | Other | lineage6 | None | ERR9786694 | Other | lineage4.1.2.1 | None | SRR1173629 | Other | None | ERR9787197 | Other | None | SRR1158918 | Sensitive | lineage4 | None | SRR1172728 | MDR-TB | None | SRR1172817 | HR-TB | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR1173118 | Other | None | SRR1173400 | Other | None | SRR1173778 | Other | None | SRR1173777 | Other | lineage4 | None | SRR1184381 | MDR-TB | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR1184380 | HR-TB | None | SRR12142341 | HR-TB | None | SRR1196546 | HR-TB | None | SRR1196566 | HR-TB | None | SRR15368973 | Other | None | SRR12416824 | HR-TB | None | SRR18213713 | HR-TB | lineage4.5 | None | ERR4815604 | HR-TB | None | SRR19303884 | HR-TB | None | SRR19304036 | HR-TB | None | SRR20969677 | HR-TB | lineage2 | None | SRR22424787 | Sensitive | lineage4.9 | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | ERR11067872 | Sensitive | lineage4.1.2.1 | None | ERR11067873 | Sensitive | lineage4.1.2.1 | None | SRR26399973 | Other | lineage4.9;La3 | None | SRR3675465 | HR-TB | None | SRR3675311 | Other | None | ERR4814639 | HR-TB | lineage4 | None | SRR3675221 | HR-TB | None | SRR3675236 | HR-TB | None | SRR3675246 | Sensitive | lineage4 | None | ERR4814352 | HR-TB | lineage2.2.1 | None | SRR3675232 | Other | lineage4.1.2.1 | None |
---|