Rv0006 - c.1515C>G
Drug resistance types
12 Sensitive
3 RR-TB
25 HR-TB
5 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
87 Other
lineage Counts
| lineage | Count |
|---|---|
| 15 | |
| lineage4.9 | 33 |
| La3;lineage2.2.1 | 1 |
| lineage2.2.2;lineage4 | 1 |
| La3;lineage2.2.2 | 1 |
| lineage4.3.2.1 | 1 |
| lineage4.1.2.1 | 11 |
| lineage4.9;lineage6.3 | 4 |
| La3;lineage4.9 | 2 |
| lineage4.3.2 | 1 |
| lineage4.1.3 | 2 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| La3;lineage4.8 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| lineage2.1;lineage4.9 | 10 |
| lineage2.2.1 | 5 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 3 |
| lineage3 | 2 |
| lineage2.1 | 2 |
| lineage1.2.2.1;lineage4.4.1.1 | 1 |
| lineage4.7 | 2 |
| lineage6.1.3 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La3;lineage2 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 8 |
| M.canetti;lineage2.1;lineage4.9 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| lineage2.1;lineage6.3 | 2 |
| lineage4.1.2 | 1 |
| lineage2.2.1;lineage6.3 | 1 |
| lineage4.1.1.1 | 1 |
| lineage2.2.1.2 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage4.6.2.2 | 1 |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.1 | 1 |
| lineage3.1.2.1;lineage4.9 | 1 |
| La1.2.BCG;La1.8.1 | 1 |
| lineage4.8 | 1 |
| La3;lineage2.1;lineage6.3 | 1 |
| La3;lineage1.1.2 | 1 |
| lineage2.2 | 1 |
| lineage4 | 1 |
| lineage4.4.1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 134 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4816999 | Other | None | SRR3675461 | RR-TB | lineage4.9 | None | ERR124636 | Sensitive | lineage4.9 | None | SRR29055629 | MDR-TB | La3;lineage2.2.1 | None | SRR29093105 | Other | lineage2.2.2;lineage4 | None | ERR13245558 | MDR-TB | La3;lineage2.2.2 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR4820854 | Other | lineage4.1.2.1 | None | SRR3675236 | Other | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | SRR29017461 | Other | La3;lineage4.9 | None | ERR751326 | Other | lineage4.9 | None | ERR9117805 | Other | lineage4.3.2 | None | SRR1165699 | Other | lineage4.9 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | SRR5341453 | Other | lineage4.9 | None | ERR1035122 | Sensitive | lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR9117709 | Other | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR11067873 | Sensitive | lineage4.1.2.1 | None | SRR7496509 | Other | None | ERR12015083 | Other | La3;lineage4.8 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | SRR29050928 | Other | lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR5341299 | HR-TB | lineage4.9 | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR3675221 | Other | lineage4.9 | None | SRR28044634 | Other | lineage3 | None | ERR9787197 | Other | None | SRR28119805 | Other | lineage4.9 | None | SRR6789621 | Other | lineage4.9 | None | ERR234659 | Other | None | ERR4814352 | Other | lineage2.2.1 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | SRR12142341 | HR-TB | lineage2.1 | None | ERR11465714 | Other | lineage1.2.2.1;lineage4.4.1.1 | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR7496523 | Other | lineage4.7 | None | SRR3675572 | Other | None | SRR3675457 | Other | lineage4.9 | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | ERR4407463 | HR-TB | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9787165 | Other | lineage6.1.3 | None | SRR3675275 | Other | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR18213713 | HR-TB | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | SRR20969677 | HR-TB | La3;lineage2 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR502511 | Sensitive | lineage4.9 | None | SRR3675214 | Other | lineage4.9 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3797069 | Other | lineage4.9 | None | SRR26399973 | Other | La3;lineage4.9 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | SRR9970980 | HR-TB | lineage4.1.2 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4820335 | Other | lineage4.1.2.1 | None | ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR502510 | Sensitive | lineage4.9 | None | SRR28119811 | Other | lineage2.2.1;lineage6.3 | None | ERR11067872 | Sensitive | lineage4.1.2.1 | None | SRR6789626 | Other | None | ERR9786617 | Other | lineage4.1.1.1 | None | SRR28119753 | Other | lineage4.9 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR29093909 | Other | lineage4.9 | None | SRR1172885 | HR-TB | lineage4.9 | None | ERR4800341 | Other | lineage3 | None | ERR702406 | Other | lineage2.1 | None | SRR3675549 | Other | lineage4.9 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR736834 | Sensitive | lineage4.9 | None | ERR9786645 | Other | lineage4.6.2.2 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR7496472 | Other | lineage4.9 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR4797264 | Sensitive | lineage4.9 | None | SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR9786642 | Other | lineage4.1.2.1 | None | SRR8552928 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR9786440 | Other | lineage4.1 | None | ERR9786604 | Other | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR2514390 | Sensitive | lineage3.1.2.1;lineage4.9 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | ERR9786569 | Other | lineage4.8 | None | ERR137286 | Other | lineage4.9 | None | ERR323066 | Sensitive | lineage4.9 | None | SRR3675508 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None | SRR1175052 | HR-TB | lineage4.9 | None | ERR1063896 | Sensitive | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR4819932 | Other | lineage4.7 | None | ERR9117721 | HR-TB | La3;lineage1.1.2 | None | ERR4811142 | RR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR7496517 | Other | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | ERR4816585 | Other | lineage2.2 | None | SRR15368973 | Other | lineage4.9 | None | ERR4815604 | Other | None | SRR6046066 | Other | lineage4.9 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR2027263 | Other | lineage4 | None | SRR6046521 | Other | lineage4.4.1.1 | None |
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