lineage | Count |
---|---|
lineage4.1 | 1 |
lineage4.3.3 | 4 |
36 | |
lineage3 | 7 |
lineage3;lineage2.1 | 1 |
lineage4.3.4.2.1 | 2 |
lineage2.2.1 | 9 |
lineage4.4.1.1 | 3 |
lineage4.1.2.1 | 15 |
lineage4;lineage1.1.2 | 1 |
lineage4.1.1.3 | 2 |
lineage4.8 | 1 |
lineage4.6.4 | 2 |
lineage1.1 | 1 |
lineage2.2 | 5 |
lineage5.2 | 2 |
lineage4.6.2.2 | 2 |
lineage3.1 | 2 |
La1 | 1 |
lineage4.9 | 9 |
La1.8.1 | 3 |
lineage4.3.2 | 1 |
lineage4.3.4.1 | 2 |
lineage4.1.2.1.1 | 1 |
lineage4.8;lineage4.1 | 2 |
lineage2.2.2 | 3 |
lineage2 | 1 |
lineage1.2.1.2 | 1 |
lineage1.2.1.2.1 | 1 |
lineage4.8;lineage2.2.1 | 1 |
lineage1.1.1.1 | 1 |
lineage4.2;La1.7 | 1 |
spoligotype | Count |
---|---|
None | 124 |
ID | Drug resistance | Lineage | Country iso2 | SRR3675464 | HR-TB | lineage4.1 | None | ERR4813861 | Other | lineage4.3.3 | None | ERR161033 | HR-TB | None | ERR4814314 | Sensitive | lineage3 | None | SRR3675482 | HR-TB | None | SRR3675383 | HR-TB | None | SRR3675486 | HR-TB | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | ERR212001 | HR-TB | None | SRR3675545 | HR-TB | None | SRR3675558 | HR-TB | None | ERR2446563 | Other | lineage2.2.1 | nl | SRR4034419 | Sensitive | lineage4.4.1.1 | None | ERR3275215 | Other | lineage4.1.2.1 | nl | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | ERR3275196 | Other | lineage2.2.1 | nl | ERR3275220 | Other | lineage3 | nl | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR2509673 | Other | lineage2.2.1 | None | ERR2446118 | Other | lineage4.1.2.1 | nl | ERR4821053 | Other | lineage3 | None | ERR2693239 | HR-TB | None | SRR6325444 | HR-TB | None | ERR2446144 | Other | lineage3 | nl | SRR6045952 | HR-TB | None | SRR6046225 | HR-TB | None | SRR6325442 | HR-TB | None | ERR278594 | HR-TB | None | ERR2517528 | Other | lineage3 | nl | ERR2517489 | Sensitive | lineage4.1.2.1 | nl | SRR6046514 | HR-TB | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR6325447 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | SRR6650296 | Sensitive | lineage4.8 | None | ERR4872102 | MDR-TB | lineage4.6.4 | None | ERR323036 | HR-TB | None | ERR3077978 | Other | lineage1.1 | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | ERR4872094 | MDR-TB | lineage5.2 | None | SRR6831950 | Other | lineage4.3.3 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR294248 | HR-TB | None | ERR323034 | HR-TB | lineage3.1 | None | ERR5311090 | HR-TB | None | ERR323038 | HR-TB | None | ERR5311099 | HR-TB | None | ERR5311081 | HR-TB | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR323055 | HR-TB | None | ERR323041 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR3797016 | HR-TB | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR3283010 | Other | La1 | None | ERR3283017 | HR-TB | None | ERR323063 | HR-TB | None | ERR1034652 | Other | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3468544 | HR-TB | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR4188350 | HR-TB | None | ERR5908228 | Other | lineage4.3.3 | None | ERR3797083 | HR-TB | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR6358837 | HR-TB | None | ERR6326069 | Pre-XDR-TB | lineage4.3.4.1 | None | ERR702404 | HR-TB | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR7821163 | Other | lineage2.2.1 | None | ERR9119508 | MDR-TB | lineage4.6.4 | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR8976043 | HR-TB | None | ERR9119096 | Other | lineage4.3.3 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9786656 | Sensitive | lineage4.1.2.1 | None | ERR9786525 | Other | lineage4.8;lineage4.1 | None | ERR9786526 | Other | lineage4.8;lineage4.1 | None | ERR9896144 | Other | lineage3 | None | ERR9786843 | Other | None | SRR069978 | Pre-XDR-TB | lineage2.2.2 | None | ERR990545 | Other | lineage3 | None | SRR069989 | HR-TB | lineage2 | None | SRR069981 | HR-TB | lineage2.2.2 | None | SRR1165506 | Other | lineage4.1.2.1 | None | SRR1162740 | Other | lineage4.1.2.1 | None | SRR1165423 | Other | lineage4.1.2.1 | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1165584 | Other | lineage4.1.2.1 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR1181289 | Other | lineage2.2.1 | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1173767 | HR-TB | lineage4.4.1.1 | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1167055 | Other | lineage4.1.2.1 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR12006550 | Other | lineage1.2.1.2 | None | SRR1183049 | Other | lineage2.2 | None | SRR13861381 | MDR-TB | lineage4.9 | None | SRR13591342 | HR-TB | lineage4.1.1.3 | None | SRR13861396 | HR-TB | lineage4.9 | None | SRR1510066 | Other | lineage1.2.1.2.1 | None | SRR13861415 | Other | lineage4.9 | None | SRR13861428 | Other | lineage4.9 | None | SRR13861434 | RR-TB | lineage4.9 | None | SRR13861424 | RR-TB | lineage4.9 | None | SRR13861528 | HR-TB | lineage4.9 | None | SRR13861596 | Other | lineage4.9 | None | SRR14801415 | Sensitive | lineage4.8;lineage2.2.1 | None | SRR1791721 | Other | La1.8.1 | None | SRR1640750 | HR-TB | None | SRR1791696 | Other | La1.8.1 | None | SRR18910194 | HR-TB | lineage2.2 | None | SRR18911980 | Sensitive | lineage2.2.2 | None | SRR19324818 | Sensitive | lineage1.1.1.1 | None | SRR5709967 | MDR-TB | lineage2.2.1 | None | SRR23961559 | Other | lineage4.2;La1.7 | None |
---|