Rv0668 - c.3042C>G
Drug resistance types
12 Sensitive
5 RR-TB
47 HR-TB
22 MDR-TB
5 Pre-XDR-TB
1 XDR-TB
156 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 62 |
| 22 | |
| lineage2.2.2;lineage4 | 1 |
| lineage4.1.2.1 | 12 |
| lineage2.1 | 5 |
| lineage2.2.1 | 15 |
| lineage4.7 | 1 |
| lineage4.9;lineage6.3 | 8 |
| lineage2.1;lineage4.9 | 15 |
| lineage6.1.3 | 1 |
| La3;lineage4.9 | 4 |
| lineage2.1;lineage4.9;lineage6.3 | 9 |
| La3;lineage2.1;lineage6.3 | 1 |
| La3;lineage2 | 1 |
| La3;lineage2.2.1 | 2 |
| La1.7;lineage4.9;lineage7 | 2 |
| lineage1.1.2 | 1 |
| lineage4.3.3 | 2 |
| lineage2.1;lineage6.3 | 2 |
| La3;M.canetti;lineage4.9 | 1 |
| lineage4.9;lineage7 | 4 |
| La2;lineage4.9 | 1 |
| lineage4.1;lineage4.8 | 2 |
| lineage2.2.1;lineage6.3 | 1 |
| lineage4.6.2.2 | 3 |
| lineage4.1.1.1 | 3 |
| La3;lineage4.3.4 | 1 |
| lineage4 | 3 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| lineage4.3.2 | 1 |
| La3 | 2 |
| lineage4.3.4.1 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage4.4.1.1 | 1 |
| lineage3.1 | 1 |
| lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | 1 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage3.1.2.1;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La3;lineage4.8 | 2 |
| lineage4.3.4 | 1 |
| lineage6.3.1 | 1 |
| La3;lineage2.1;lineage4.9 | 2 |
| La2;lineage2.2 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| M.canetti;lineage4.9 | 2 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.3.4.2.1 | 3 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| La3;lineage2.2.2 | 1 |
| lineage4.2.2.2 | 1 |
| lineage1.2.2.2 | 1 |
| lineage4.8 | 3 |
| lineage5.2 | 2 |
| lineage3 | 3 |
| lineage4.1.3 | 2 |
| lineage4.8.1 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| La1.7;lineage4.9 | 2 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| La1.2.BCG;La1.8.1 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 4 |
| lineage2.2 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| La3;lineage1.1.2 | 1 |
| lineage4.1.1.3 | 1 |
| lineage2.2.1;lineage3 | 1 |
| lineage2.2.2 | 1 |
| lineage1;lineage4.9 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage3.1.1 | 1 |
| La1.7.1;lineage4.9 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 248 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR28119805 | Other | lineage4.9 | None | ERR4817060 | Other | None | SRR28119752 | Other | lineage4.9 | None | SRR29093105 | Other | lineage2.2.2;lineage4 | None | ERR181824 | HR-TB | lineage4.9 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | SRR12142341 | HR-TB | lineage2.1 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR7496523 | Other | lineage4.7 | None | ERR9786604 | Other | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | SRR6046382 | Sensitive | lineage2.2.1 | None | SRR3675572 | Other | None | SRR3675457 | Other | lineage4.9 | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | SRR29050928 | Other | lineage4.9 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR4407463 | HR-TB | None | ERR9787165 | Other | lineage6.1.3 | None | SRR1172951 | Other | lineage4.9 | None | SRR1196768 | MDR-TB | None | ERR181744 | HR-TB | La3;lineage4.9 | None | SRR3675508 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None | SRR18213713 | HR-TB | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | SRR20969677 | HR-TB | La3;lineage2 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR1710057 | Other | lineage2.1 | None | SRR29055629 | MDR-TB | La3;lineage2.2.1 | None | ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR25827687 | MDR-TB | lineage1.1.2 | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | SRR6045191 | Sensitive | lineage4.9 | None | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR9786526 | Other | lineage4.1;lineage4.8 | None | SRR28119811 | Other | lineage2.2.1;lineage6.3 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR9786617 | Other | lineage4.1.1.1 | None | ERR161039 | HR-TB | La3;lineage4.3.4 | None | SRR7496471 | Sensitive | lineage4 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | ERR4820854 | Other | lineage4.1.2.1 | None | SRR6044942 | HR-TB | lineage4.9 | None | SRR3675236 | Other | None | ERR9117805 | Other | lineage4.3.2 | None | ERR3283044 | Other | lineage4 | None | SRR1172728 | RR-TB | La3 | None | ERR702406 | Other | lineage2.1 | None | ERR1063849 | HR-TB | lineage4.9 | None | SRR3675549 | Other | lineage4.9 | None | ERR3797047 | MDR-TB | lineage4.9 | None | ERR11466499 | Other | lineage4.3.4.1 | None | SRR1172234 | Other | lineage4.9 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | SRR12416840 | MDR-TB | lineage4.9 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | SRR29050859 | Other | lineage4.9 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | SRR1184346 | HR-TB | lineage3.1 | None | ERR6358991 | HR-TB | lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | SRR3675311 | Other | lineage4.9 | None | SRR1184294 | Other | lineage4.9 | None | ERR3283018 | HR-TB | lineage4.9 | None | ERR3804155 | Other | lineage4.1.2.1 | None | SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR1173118 | Other | lineage2.2.1 | None | ERR2514692 | Other | None | SRR25827682 | Other | None | ERR9787197 | Other | None | SRR8552928 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR4814352 | Other | lineage2.2.1 | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | ERR736875 | HR-TB | lineage4.9 | None | ERR4815752 | Other | lineage4.9 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | ERR6866807 | Other | lineage4.9 | None | SRR21732980 | Other | lineage4.3.3 | None | SRR25827507 | MDR-TB | lineage4.1.1.1 | None | SRR29096541 | Other | lineage4.9 | None | ERR2514390 | Sensitive | lineage3.1.2.1;lineage4.9 | None | SRR1173778 | Other | lineage4.9 | None | ERR176651 | Other | lineage4.9 | None | SRR29016780 | Other | lineage4.9 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR4817893 | Other | La3;lineage4.8 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR1175074 | Other | None | SRR3675214 | Other | lineage4.9 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR1169194 | Other | lineage4.9 | None | ERR13267017 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR11466146 | Other | lineage4.3.4.2.1 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | ERR13245558 | MDR-TB | La3;lineage2.2.2 | None | SRR6045526 | Other | lineage4.9 | None | ERR1035157 | Other | lineage4.9 | None | SRR6046066 | Other | lineage4.9 | None | ERR2027263 | Other | lineage4 | None | ERR4816999 | Other | None | ERR2513470 | Other | lineage4.2.2.2 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR4816852 | Other | lineage4.9 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR176779 | HR-TB | lineage4.9 | None | ERR3283021 | HR-TB | lineage4.9 | None | ERR4811311 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4797201 | Other | lineage1.2.2.2 | None | ERR11081258 | Other | lineage4.8 | None | ERR11049020 | Other | lineage4.8 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR4800341 | Other | lineage3 | None | ERR11465232 | Sensitive | lineage4.1.2.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | SRR1172817 | Other | La3 | None | SRR1173400 | Other | lineage4.9 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | SRR7496509 | Other | None | ERR12015083 | Other | La3;lineage4.8 | None | SRR26937071 | MDR-TB | La3;lineage2.2.1 | None | SRR12708389 | MDR-TB | lineage4.8.1 | None | SRR29017461 | Other | La3;lineage4.9 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR4797054 | Pre-XDR-TB | lineage2.1 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR212125 | HR-TB | lineage4.9 | None | ERR9786645 | Other | lineage4.6.2.2 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR7496472 | Other | lineage4.9 | None | SRR6045233 | Other | M.canetti;lineage4.9 | None | ERR3797070 | Other | lineage4.9 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | ERR234659 | Other | None | ERR245716 | Sensitive | lineage2.2.1 | None | SRR21690574 | Other | lineage4.1.2.1 | None | ERR176549 | Other | lineage4.3.4.2.1 | None | ERR176778 | HR-TB | lineage4.9 | None | ERR9786421 | Other | lineage4.1.2.1 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | ERR2514821 | Sensitive | lineage2.2.1 | None | ERR9786525 | Other | lineage4.1;lineage4.8 | None | SRR1184372 | MDR-TB | None | SRR9971270 | RR-TB | lineage2.2.1 | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | SRR6045503 | Sensitive | lineage4.9 | None | SRR3675232 | Other | lineage4.1.2.1 | None | ERR1063858 | HR-TB | lineage4.9 | None | SRR29051093 | Other | lineage4.9 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | ERR3283042 | Other | lineage4.9 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR4816322 | Other | lineage4.9 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR9786569 | Other | lineage4.8 | None | SRR1196583 | Other | lineage4.9 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | SRR3675275 | Other | lineage4.9 | None | ERR4810624 | MDR-TB | lineage2.2 | None | ERR387051 | Other | lineage4.9 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | ERR3797069 | Other | lineage4.9 | None | SRR18003019 | Other | lineage2.2.1 | None | SRR26399973 | Other | La3;lineage4.9 | None | ERR9119669 | HR-TB | lineage4.9 | None | ERR9786682 | Other | lineage4.1.2.1 | None | SRR1173355 | Other | lineage4.9 | None | ERR9786627 | Other | lineage4.1.2.1 | None | SRR3416776 | Other | lineage2.1 | None | ERR9117721 | HR-TB | La3;lineage1.1.2 | None | ERR4811142 | RR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | ERR11466242 | Sensitive | lineage4.1.1.3 | None | SRR14801759 | HR-TB | La1.7;lineage4.9 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1184312 | Other | lineage2.2.1 | None | ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR15368973 | Other | lineage4.9 | None | ERR4815604 | Other | None | SRR25827497 | XDR-TB | lineage2.2.1;lineage3 | None | SRR18910194 | HR-TB | lineage2.2.2 | None | ERR181887 | Other | lineage4.9 | None | ERR4769521 | RR-TB | lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | ERR11465628 | Sensitive | lineage4.3.4.2.1 | None | SRR26159043 | Other | lineage4.9 | None | SRR29051077 | Other | lineage4.9 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | SRR11662694 | Other | lineage4.9 | None | SRR29016901 | Other | La3;lineage4.9 | None | SRR6789626 | Other | None | ERR4816470 | HR-TB | lineage3 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | SRR3675248 | Other | lineage4.9 | None | SRR1196474 | Other | lineage3.1.1 | None | SRR1196546 | Other | lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR176793 | Other | lineage4.1.1.1 | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR990545 | Other | lineage3 | None | SRR1165699 | Other | lineage4.9 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | SRR28119777 | Other | lineage4.9 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR9117709 | Other | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | ERR473332 | Other | lineage4.9 | None | ERR176751 | Other | lineage4.9 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | SRR3675456 | RR-TB | lineage4.9;lineage7 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | ERR502912 | Other | lineage2.2.1 | None | SRR7131023 | Other | lineage4.1.2.1 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786843 | Other | None | SRR1184381 | MDR-TB | None | SRR3675221 | Other | lineage4.9 | None | SRR1172857 | Other | None |
|---|
