lineage | Count |
---|---|
86 | |
lineage4.9;La3 | 1 |
lineage2 | 2 |
lineage3;lineage2.2.1 | 1 |
lineage4.9 | 10 |
lineage4.1.1.1 | 1 |
lineage6.3;lineage4.9;lineage2.1 | 1 |
lineage4.1.1 | 1 |
lineage2.2.1 | 4 |
lineage4 | 3 |
lineage4.3 | 1 |
lineage4.3.4.2.1 | 1 |
lineage4.8 | 1 |
lineage2.2 | 5 |
La1.8.1 | 1 |
lineage4.8;La3 | 1 |
lineage4.9;lineage3.1.2.1 | 1 |
lineage4.1.2.1 | 4 |
lineage4.6.2.2 | 3 |
lineage4.2.1 | 1 |
La2 | 1 |
lineage4.1.3 | 2 |
lineage3 | 1 |
lineage4.3.2 | 1 |
lineage6.3.1 | 1 |
La3 | 1 |
lineage4.4.1.1 | 1 |
lineage3.1 | 1 |
lineage1.1.2 | 1 |
lineage1.1.1 | 1 |
lineage4.5 | 1 |
spoligotype | Count |
---|---|
None | 141 |
ID | Drug resistance | Lineage | Country iso2 | SRR19304036 | HR-TB | None | SRR26399973 | Other | lineage4.9;La3 | None | SRR25827682 | Other | None | SRR20969677 | HR-TB | lineage2 | None | SRR25827497 | Pre-XDR-TB | lineage3;lineage2.2.1 | None | SRR26159043 | Other | lineage4.9 | None | SRR25827507 | MDR-TB | lineage4.1.1.1 | None | SRR23961558 | Other | lineage6.3;lineage4.9;lineage2.1 | None | SRR3675465 | HR-TB | None | ERR4815604 | HR-TB | None | ERR176793 | Other | lineage4.1.1 | None | ERR4814352 | HR-TB | lineage2.2.1 | None | ERR2027263 | Other | lineage4 | None | SRR3675221 | HR-TB | None | ERR176568 | Other | lineage4.3 | None | SRR3675311 | Other | None | ERR4816999 | Other | None | ERR161034 | Other | lineage4.3.4.2.1 | None | SRR3675236 | HR-TB | None | SRR3675234 | Other | None | ERR176643 | HR-TB | None | ERR176751 | HR-TB | None | SRR3675510 | Other | None | ERR4817060 | RR-TB | None | ERR4817037 | Other | lineage4.9 | None | ERR212033 | HR-TB | None | ERR4816151 | Other | lineage4.8 | None | ERR212001 | HR-TB | None | ERR4816656 | HR-TB | None | SRR3742665 | HR-TB | None | ERR4816585 | Other | lineage2.2 | None | ERR4818021 | Other | La1.8.1 | None | ERR4817893 | Other | lineage4.8;La3 | None | ERR2514390 | Sensitive | lineage4.9;lineage3.1.2.1 | None | ERR4818929 | HR-TB | None | ERR4818615 | Other | None | ERR4820854 | Other | lineage4.1.2.1 | None | SRR5341456 | Other | None | SRR5341302 | HR-TB | None | ERR4819781 | Other | lineage2.2.1 | None | SRR5341333 | HR-TB | None | ERR2693230 | Other | None | ERR2693231 | Other | None | ERR2693257 | Other | None | ERR2693254 | Other | None | SRR6046133 | HR-TB | None | SRR6045555 | HR-TB | None | SRR6044790 | HR-TB | None | SRR6046299 | HR-TB | None | SRR6044855 | Other | lineage4.9 | None | SRR6046066 | HR-TB | None | SRR6044890 | Other | lineage4.9 | None | SRR6045233 | HR-TB | None | SRR6046225 | HR-TB | None | SRR6046540 | HR-TB | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6046594 | HR-TB | lineage4 | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | SRR6785268 | Sensitive | lineage4.2.1 | None | SRR6789626 | Other | None | ERR502524 | HR-TB | La2 | None | ERR502532 | HR-TB | None | SRR7496509 | Other | None | ERR323043 | HR-TB | None | SRR7585435 | Other | lineage4.9 | None | ERR1035157 | Other | lineage4.9 | None | ERR3283013 | MDR-TB | lineage4 | None | ERR3283032 | HR-TB | None | ERR3283027 | HR-TB | None | ERR3283024 | Other | None | ERR3797014 | Other | None | ERR3283036 | HR-TB | None | ERR3283058 | Other | lineage4.9 | None | ERR3797017 | Other | None | ERR3797043 | HR-TB | None | ERR3797044 | Other | None | ERR3797036 | HR-TB | None | ERR3797058 | Other | lineage4.9 | None | ERR3797069 | Other | None | ERR3797061 | Other | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR4407463 | HR-TB | None | ERR4811022 | HR-TB | None | ERR4800341 | Other | lineage3 | None | ERR4810741 | HR-TB | None | ERR5336148 | Other | None | ERR4811105 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR736867 | HR-TB | None | ERR736835 | HR-TB | None | ERR702406 | HR-TB | None | ERR736839 | Other | None | ERR736874 | HR-TB | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR9117709 | HR-TB | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9786604 | Other | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786671 | Other | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786843 | Other | None | ERR9787197 | Other | None | ERR9787139 | Other | lineage6.3.1 | None | SRR1169194 | Other | None | SRR1169249 | Other | La3 | None | SRR1172728 | MDR-TB | None | SRR1169306 | Other | None | SRR1172234 | Other | None | SRR1173400 | Other | None | SRR1172817 | HR-TB | None | SRR1172844 | MDR-TB | lineage4.4.1.1 | None | SRR1172857 | MDR-TB | None | SRR1172951 | Other | None | SRR1173629 | Other | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173778 | Other | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1173788 | Other | None | SRR1183049 | Other | lineage2.2 | None | SRR1184294 | HR-TB | None | SRR1184372 | MDR-TB | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1184380 | HR-TB | None | SRR1196566 | HR-TB | None | SRR1196546 | HR-TB | None | SRR1196768 | MDR-TB | None | SRR12142341 | HR-TB | None | SRR25827687 | MDR-TB | lineage1.1.2 | None | SRR19303884 | HR-TB | None | SRR12416824 | HR-TB | None | SRR13837702 | Sensitive | lineage4.9 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | SRR15368973 | Other | None | SRR18213713 | HR-TB | lineage4.5 | None |
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