Rv1173 - c.2100G>C
Drug resistance types
4 Sensitive
3 RR-TB
42 HR-TB
6 MDR-TB
3 Pre-XDR-TB
0 XDR-TB
98 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9;lineage7 | 3 |
| lineage2.1;lineage4.9 | 14 |
| lineage2.1;lineage4.9;lineage6.3 | 6 |
| lineage4.1.1.1 | 1 |
| lineage4.9 | 39 |
| 20 | |
| La1.7;lineage3.1;lineage4 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage3 | 1 |
| lineage4.1.2.1 | 4 |
| lineage4.9;lineage6.3 | 8 |
| La3;lineage4.9 | 2 |
| La1.7.1;lineage4.9 | 1 |
| lineage2.2.1 | 13 |
| lineage2.1;lineage6.3 | 2 |
| lineage4.8.1 | 1 |
| La3;lineage2.1;lineage4.9 | 2 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 2 |
| lineage4.3.4 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| lineage4.3.3 | 1 |
| lineage4.6.2.2 | 2 |
| lineage4.1.3 | 2 |
| lineage6.3.1 | 1 |
| lineage2.1 | 2 |
| lineage4.4.1.1 | 1 |
| La3 | 2 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage4.3.4.2 | 1 |
| lineage3.1;lineage4.9 | 1 |
| lineage4 | 3 |
| lineage4.6.1 | 1 |
| lineage3.1.1 | 1 |
| lineage4.8 | 2 |
| lineage6 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage3.1 | 1 |
| La1.7;lineage4.9;lineage7 | 1 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.2.1.2 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 156 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR176793 | Other | lineage4.1.1.1 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | ERR4800341 | Other | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | ERR4810741 | HR-TB | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR4811142 | RR-TB | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4811075 | Other | None | SRR28119753 | Other | lineage4.9 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR4815441 | HR-TB | lineage4.9 | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | SRR29017461 | Other | La3;lineage4.9 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | SRR7535086 | Other | None | SRR1165699 | Other | lineage4.9 | None | ERR4819877 | HR-TB | lineage4.9 | None | ERR4817731 | HR-TB | lineage4.9 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | ERR4816585 | Other | lineage2.2.1 | None | ERR9117709 | Other | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR1173400 | Other | lineage4.9 | None | SRR28119811 | Other | lineage2.2.1 | None | SRR12708389 | MDR-TB | lineage4.8.1 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | SRR28119752 | Other | lineage4.9 | None | ERR5311094 | HR-TB | lineage4.9 | None | ERR212125 | HR-TB | lineage4.9 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4814352 | Other | lineage2.2.1 | None | ERR176778 | HR-TB | lineage4.9 | None | ERR736875 | HR-TB | lineage4.9 | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675275 | Other | lineage4.9 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1173218 | Other | lineage4.3.3 | None | SRR15368973 | Other | lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR4811105 | HR-TB | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR502908 | HR-TB | lineage2.2.1 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR176779 | HR-TB | lineage4.9 | None | SRR20969677 | HR-TB | lineage2.1 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR1172817 | Other | La3 | None | SRR29055629 | MDR-TB | lineage2.2.1 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | SRR7496472 | Other | lineage4.9 | None | ERR3797070 | Other | lineage4.9 | None | ERR9787197 | Other | None | SRR6789621 | Other | lineage4.9 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | ERR4819422 | HR-TB | lineage4.9 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR1173363 | Other | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR3283042 | Other | lineage4.9 | None | SRR1173778 | Other | lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | SRR3675508 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1196583 | Other | lineage4.9 | None | ERR387051 | Other | lineage4.9 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | ERR3797069 | Other | lineage4.9 | None | SRR26399973 | Other | La3;lineage4.9 | None | ERR4820773 | HR-TB | lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | ERR176549 | Other | lineage4.3.4.2 | None | ERR181887 | Other | lineage4.9 | None | ERR2514390 | Sensitive | lineage3.1;lineage4.9 | None | ERR2027263 | Other | lineage4 | None | ERR4797201 | Other | None | ERR4816999 | Other | None | ERR502912 | Other | lineage2.2.1 | None | ERR6358755 | Other | lineage4.6.1 | None | ERR4811311 | Other | None | SRR1196474 | Other | lineage3.1.1 | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | SRR1196546 | Other | lineage4.9 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR9786569 | Other | lineage4.8 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR1063862 | HR-TB | lineage4.9 | None | SRR12142341 | HR-TB | lineage2.2.1 | None | SRR12416824 | HR-TB | None | ERR3283044 | Other | lineage4 | None | ERR4817893 | Other | lineage4.8 | None | ERR9117721 | HR-TB | None | ERR9787165 | Other | lineage6 | None | ERR4816478 | HR-TB | lineage4 | None | SRR18003019 | Other | lineage2.2.1 | None | SRR1172728 | RR-TB | La3 | None | SRR28119777 | Other | lineage4.9 | None | ERR702406 | Other | lineage2.1 | None | SRR6046382 | Sensitive | lineage2.2.1 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | SRR3675456 | RR-TB | lineage4.9;lineage7 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR29016780 | Other | lineage4.9 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | SRR1184294 | Other | lineage4.9 | None | ERR3283018 | HR-TB | lineage4.9 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR9786642 | Other | lineage4.1.2.1 | None | SRR1184381 | MDR-TB | None | SRR25827682 | Other | None | SRR28119805 | Other | lineage4.9 | None | ERR234659 | Other | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | ERR9786604 | Other | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | SRR3675457 | Other | lineage4.9 | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | ERR4407463 | HR-TB | None | ERR4819241 | Other | lineage4.9 | None | ERR176651 | Other | lineage4.9 | None | ERR4818929 | HR-TB | lineage4.9 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR4797054 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | SRR28119741 | Pre-XDR-TB | lineage2.2.1 | None |
|---|
