lineage | Count |
---|---|
lineage4.2;La1.7 | 1 |
lineage4.9;La3 | 1 |
La1.2 | 1 |
lineage6.3;lineage2.2.1 | 1 |
125 | |
lineage4.9 | 17 |
lineage4.1.1 | 1 |
lineage4.3.4.2.1 | 1 |
lineage2.2.1 | 20 |
lineage2.1 | 2 |
lineage4.3 | 1 |
lineage4 | 38 |
lineage4.8 | 2 |
lineage4.8;La3 | 1 |
lineage4.4.1.1 | 2 |
lineage2.2 | 4 |
La1.8.1 | 1 |
lineage4.1.2 | 1 |
lineage4.1.1.2 | 1 |
lineage3 | 3 |
lineage4.7 | 2 |
lineage4.1.2.1 | 6 |
lineage5.2 | 2 |
lineage4.4.1.2 | 1 |
lineage4.1.1.3 | 1 |
lineage2 | 3 |
lineage4.6.1.1 | 1 |
lineage4.8;lineage4.1 | 1 |
lineage1.1.2 | 1 |
lineage6.3.1 | 1 |
La3 | 1 |
lineage4.3.3 | 4 |
lineage2.2.1.1 | 4 |
lineage3.1 | 2 |
lineage4.3.4.1 | 1 |
lineage4.5 | 1 |
spoligotype | Count |
---|---|
None | 256 |
ID | Drug resistance | Lineage | Country iso2 | SRR23961559 | Other | lineage4.2;La1.7 | None | SRR26399973 | Other | lineage4.9;La3 | None | SRR23961549 | Other | La1.2 | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | SRR3675502 | Other | None | ERR4815604 | HR-TB | None | SRR3675473 | Sensitive | lineage4.9 | None | ERR176793 | Other | lineage4.1.1 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | SRR3675465 | HR-TB | None | ERR158583 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | SAMN02585910 | Other | lineage2.2.1 | None | SRR3675488 | HR-TB | None | SRR3675501 | HR-TB | None | SRR3416776 | Other | lineage2.1 | None | SRR3675221 | HR-TB | None | ERR176568 | Other | lineage4.3 | None | SRR3675222 | Other | None | SRR3675236 | HR-TB | None | ERR181824 | HR-TB | lineage4 | None | SRR3675279 | Other | None | ERR176651 | HR-TB | None | SRR3675311 | Other | None | ERR176643 | HR-TB | None | ERR176751 | HR-TB | None | SRR3675312 | HR-TB | lineage4 | None | SRR3675387 | Sensitive | None | SRR3675510 | Other | None | ERR2229542 | Other | lineage4.8 | None | ERR4816999 | Other | None | ERR4817037 | Other | lineage4.9 | None | ERR2027263 | Other | lineage4 | None | SRR3675541 | Sensitive | lineage4.9 | None | ERR212033 | HR-TB | None | SRR3675550 | Other | None | ERR212001 | HR-TB | None | ERR212138 | HR-TB | lineage4 | None | ERR4817060 | RR-TB | None | SRR3675572 | Other | None | ERR212125 | HR-TB | lineage4 | None | SRR3675574 | HR-TB | None | ERR4817893 | Other | lineage4.8;La3 | None | ERR4816466 | HR-TB | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | SRR3742665 | HR-TB | None | ERR4816656 | HR-TB | None | ERR4816585 | Other | lineage2.2 | None | ERR4817735 | Other | lineage4.8 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR1035162 | Other | None | SRR7496472 | Other | None | ERR4818021 | Other | La1.8.1 | None | SRR5341437 | Sensitive | lineage4.9 | None | ERR234659 | HR-TB | None | ERR4818347 | Other | lineage4.1.2 | None | ERR4818929 | HR-TB | None | SRR5341432 | HR-TB | lineage4 | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR4818394 | Other | lineage4.9 | None | ERR4818615 | Other | None | SRR5341373 | HR-TB | lineage4 | None | SRR5341400 | HR-TB | lineage4 | None | SRR5341418 | Other | None | SRR5341293 | HR-TB | lineage4 | None | ERR2514552 | Sensitive | lineage3 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR5341303 | RR-TB | lineage4 | None | SRR5341300 | Other | lineage4 | None | SRR5341296 | Sensitive | lineage4.9 | None | ERR2514692 | Other | None | SRR5341308 | Sensitive | lineage4 | None | SRR5341302 | HR-TB | None | ERR2514821 | Other | lineage2.2.1 | None | SRR5341333 | HR-TB | None | SRR5341313 | HR-TB | None | SRR5341315 | Sensitive | None | SRR5341323 | Sensitive | lineage4 | None | ERR4819932 | Other | lineage4.7 | None | SRR5341461 | Sensitive | lineage4 | None | SRR6045327 | HR-TB | None | SRR6045503 | HR-TB | None | SRR6045526 | HR-TB | None | SRR5535933 | HR-TB | None | SRR6044790 | HR-TB | None | SRR6044855 | Other | lineage4.9 | None | SRR6046046 | Other | None | SRR6046066 | HR-TB | None | SRR5341345 | Sensitive | lineage4.9 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR4821578 | Other | lineage4.1.2.1 | None | ERR4821655 | Sensitive | lineage4 | None | SRR6045892 | Sensitive | None | SRR6044838 | Other | lineage4.9 | None | SRR6045399 | Other | None | SRR6046245 | Other | lineage4.9 | None | SRR6046225 | HR-TB | None | SRR6046305 | Other | lineage4.9 | None | SRR6046362 | HR-TB | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR4830353 | Other | None | SRR6046460 | HR-TB | None | SRR6046824 | HR-TB | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6046482 | HR-TB | None | SRR6046540 | HR-TB | None | SRR6511621 | HR-TB | None | SRR6789626 | Other | None | SRR6785267 | Other | lineage2.2.1 | None | ERR502908 | HR-TB | lineage2.2.1 | None | SRR6832787 | RR-TB | lineage2.2.1 | None | ERR502532 | HR-TB | None | ERR502889 | Other | None | ERR502510 | Sensitive | lineage4 | None | SRR7496509 | Other | None | ERR502943 | HR-TB | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR7496523 | Other | lineage4.7 | None | SRR7535082 | Sensitive | lineage4 | None | ERR323066 | Sensitive | lineage4 | None | SRR7535086 | Other | None | ERR323045 | HR-TB | None | SRR7585435 | Other | lineage4.9 | None | ERR323043 | HR-TB | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR1034652 | Other | None | ERR323085 | Sensitive | lineage4 | None | ERR323107 | Other | lineage4 | None | ERR067699 | HR-TB | lineage4 | None | ERR1034634 | HR-TB | None | ERR323108 | HR-TB | lineage4 | None | ERR067681 | HR-TB | None | ERR1063857 | HR-TB | None | ERR1035122 | Sensitive | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR11466044 | Other | lineage4.1.1.3 | None | ERR1035157 | Other | lineage4.9 | None | ERR1063859 | HR-TB | None | ERR1063862 | HR-TB | None | ERR133986 | HR-TB | None | ERR133825 | Sensitive | lineage4 | None | ERR1063896 | Sensitive | None | ERR3283036 | HR-TB | None | ERR137286 | Sensitive | lineage4 | None | ERR5336148 | Other | None | ERR3283021 | HR-TB | None | ERR3283027 | HR-TB | None | ERR369159 | Sensitive | lineage4 | None | ERR3439432 | Other | None | ERR3797046 | HR-TB | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4407463 | HR-TB | None | ERR473332 | Other | lineage4 | None | ERR3797069 | Other | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | ERR403298 | HR-TB | lineage4 | None | ERR4769450 | HR-TB | None | ERR4769474 | HR-TB | lineage4 | None | ERR4769521 | HR-TB | None | ERR4810741 | HR-TB | None | ERR4800341 | Other | lineage3 | None | ERR4798406 | HR-TB | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR4811105 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR4811022 | HR-TB | None | ERR736834 | Sensitive | lineage4 | None | ERR6866807 | HR-TB | lineage4 | None | ERR702406 | HR-TB | None | ERR702404 | HR-TB | None | ERR736848 | HR-TB | None | ERR736839 | Other | None | ERR736872 | Sensitive | lineage4 | None | ERR736856 | HR-TB | lineage4 | None | ERR736867 | HR-TB | None | ERR736874 | HR-TB | None | ERR751326 | Sensitive | lineage4 | None | ERR7821163 | Other | lineage2.2.1 | None | ERR9117709 | HR-TB | None | ERR9786525 | Other | lineage4.8;lineage4.1 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9786604 | Other | None | ERR9786671 | Other | None | ERR9786843 | Other | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR990545 | Other | lineage3 | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR1167384 | Other | lineage4 | None | SRR1169306 | Other | None | SRR1169194 | Other | None | SRR1169249 | Other | La3 | None | SRR1172728 | MDR-TB | None | SRR1172234 | Other | None | SRR1172858 | MDR-TB | lineage4.3.3 | None | SRR1172817 | HR-TB | None | SRR1172844 | MDR-TB | lineage4.4.1.1 | None | SRR1173153 | HR-TB | None | SRR1172857 | MDR-TB | None | SRR1173118 | Other | None | SRR1172951 | Other | None | SRR1173218 | Pre-XDR-TB | lineage4.3.3 | None | SRR1173363 | HR-TB | None | SRR1173484 | Other | lineage4 | None | SRR1173400 | Other | None | SRR1173562 | HR-TB | lineage4 | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173629 | Other | None | SRR1173706 | Other | lineage4.9 | None | SRR1173788 | Other | None | SRR1173778 | Other | None | SRR1175500 | MDR-TB | lineage4 | None | SRR1175074 | MDR-TB | None | SRR1175508 | Other | lineage4.9 | None | SRR1175507 | MDR-TB | lineage4 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1184024 | Other | lineage2.2.1.1 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR1183049 | Other | lineage2.2 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR1183145 | Other | lineage2.2.1 | None | SRR1180270 | Other | lineage2.2.1 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR1181091 | Other | lineage2.2.1.1 | None | SRR1181237 | Sensitive | lineage2.2 | None | SRR1181289 | Other | lineage2.2.1 | None | SRR1181328 | Other | lineage2.2.1 | None | SRR1184294 | HR-TB | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184381 | MDR-TB | None | SRR1184372 | MDR-TB | None | SRR1184380 | HR-TB | None | SRR1196494 | MDR-TB | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1184388 | Other | None | SRR1196677 | HR-TB | lineage2 | None | SRR1196546 | HR-TB | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | SRR1196566 | HR-TB | None | SRR1196768 | MDR-TB | None | SRR12416824 | HR-TB | None | SRR12142341 | HR-TB | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR15368973 | Other | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR1710057 | Other | lineage2.1 | None | SRR19303884 | HR-TB | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR19304036 | HR-TB | None | SRR20969677 | HR-TB | lineage2 | None |
---|