Rv0486 - c.372C>T


Drug resistance types
30 Sensitive 13 RR-TB 71 HR-TB 61 MDR-TB 7 Pre-XDR-TB 0 XDR-TB 125 Other
lineage Counts
lineage Count
lineage2.1;lineage4.9 18
lineage4.8.1 1
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 1
lineage2.1 5
lineage3 8
lineage4.9 45
La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 1
lineage2.1;lineage2.2;lineage6.3 1
lineage1.1 1
M.canetti;lineage2.1;lineage4.9 24
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 4
La1.7;lineage4.9 2
lineage4.1.2.1 10
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 3
17
lineage2.1;lineage4.1.1.1;lineage6.3 2
lineage4.4.1.1.1 34
lineage4.3.4.2.1 1
lineage2.2.1 11
lineage4.9;lineage6.3 4
La1.8.1 1
M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 1
La3;lineage2.1;lineage6.3 1
lineage4.6.1.1 1
lineage6.1.2 11
lineage2.2.1.2 2
La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 1
lineage3.1.2.1;lineage3.1.2.2 1
La3;lineage2 1
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 1
lineage2.1;lineage4.9;lineage6.3 8
lineage2.1;lineage4.3.2 1
lineage4.7 1
lineage4.4.1.1 4
La3;M.canetti;lineage4.9 1
La1.6;La3;lineage4.6.4;lineage4.9 1
lineage4.9;lineage9 2
M.canetti;lineage2.1;lineage4.9;lineage6.3 5
lineage1.1.2;lineage4 1
M.canetti;lineage2.1;lineage4.1.4;lineage4.9 1
lineage4 3
La2;lineage4.9;lineage9 1
lineage2.1;lineage4.9;lineage6.3;lineage8 1
lineage4.1.3 3
La3 2
La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 1
La1;lineage4.1.2 1
La3;lineage2.1;lineage4.9;lineage6.3 4
lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 1
M.canetti;lineage2.1;lineage4.3.1;lineage4.9 1
lineage2.2.1.1 2
M.canetti;lineage2.1 1
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
lineage4.6.3;lineage4.9 1
M.canetti;lineage4.9 1
lineage4.3.2;lineage4.9 1
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 1
La3;M.canetti;lineage4.8;lineage4.9 1
lineage4.8 1
La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 1
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
La3;lineage1.1.2 1
La2;lineage4.9 1
M.canetti;lineage2.2 1
La1.6;La3;lineage4.9 1
La1.2;La1.8.1 1
La1.7;lineage3.1;lineage4 1
La3;M.canetti;lineage2.1;lineage4.9 1
La1.6;La3;M.canetti;lineage2.1;lineage4.9 1
La1;lineage4.9 1
lineage4.1.1.1 1
lineage1.2.2.2 1
lineage4.1.2.1.1 1
La3;lineage2.1;lineage4.9 2
M.canetti;lineage2.1;lineage6.3 2
lineage4.6.2.2 1
lineage2.2 2
lineage2.2.1;lineage4.4.1.1.1 1
La1.7.1 1
M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 1
La1.2.BCG;La1.8.1 1
La3;lineage4.8 1
lineage6.3.1 1
M.canetti;lineage2.1;lineage4 1
La3;M.canetti;lineage2.2.1 1
lineage2.1;lineage6.3 2
M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
lineage4.1.1.3 1
La1.7;lineage4.3.4.1 1
lineage3.1.2.2 1
M.canetti;lineage4.3.1;lineage4.9 1
lineage4.3.2 1
M.canetti;lineage2.1;lineage4.1.2.1 1
lineage4.5 1
lineage1.1.2 1
spoligotype Counts
spoligotype Count
None 307
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR736867 Other lineage2.1;lineage4.9 None
SRR12708389 MDR-TB lineage4.8.1 None
ERR1334034 Other lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 None
ERR4797054 Pre-XDR-TB lineage2.1 None
ERR4817538 Sensitive lineage3 None
SRR13861332 Other lineage4.9 None
ERR5311094 HR-TB lineage4.9 None
SRR3675234 Other La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR8976043 HR-TB lineage2.1;lineage2.2;lineage6.3 None
ERR3077978 RR-TB lineage1.1 None
ERR1873393 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR3797014 Other La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR176560 HR-TB La1.7;lineage4.9 None
ERR9786642 Other lineage4.1.2.1 None
SRR6325448 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR987722 MDR-TB None
SRR6325442 HR-TB lineage2.1;lineage4.1.1.1;lineage6.3 None
SRR1140936 Pre-XDR-TB lineage4.4.1.1.1 None
ERR176549 Other lineage4.3.4.2.1 None
ERR212034 HR-TB La1.7;lineage4.9 None
SRR11342697 MDR-TB lineage4.4.1.1.1 None
ERR11488990 MDR-TB lineage4.4.1.1.1 None
ERR4819781 Other lineage2.2.1 None
SRR1184372 MDR-TB None
ERR3283048 Other lineage4.9 None
ERR502524 HR-TB lineage4.9;lineage6.3 None
ERR3797016 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR29096410 Other lineage4.9 None
ERR3797023 HR-TB La1.8.1 None
ERR4188342 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR1196583 Other lineage4.9 None
ERR3468607 Other lineage4.9 None
ERR11252599 Other M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 None
SRR6046540 Other lineage2.1;lineage4.9 None
ERR4810741 HR-TB La3;lineage2.1;lineage6.3 None
ERR6358755 Other lineage4.6.1.1 None
ERR3803998 Sensitive lineage6.1.2 None
SRR1175127 Other lineage2.2.1.2 None
ERR9787286 Sensitive lineage6.1.2 None
ERR2693257 Other La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 None
ERR987729 HR-TB lineage3.1.2.1;lineage3.1.2.2 None
SRR20969677 HR-TB La3;lineage2 None
ERR3797044 Other La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 None
SRR1710057 Other lineage2.1 None
ERR4811075 Other lineage2.1;lineage4.9;lineage6.3 None
SRR1184388 Other lineage2.1;lineage4.9 None
SRR3675506 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR5311083 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR5311081 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4811022 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR7911441 MDR-TB lineage4.4.1.1.1 za
SRR18003019 Other lineage2.2.1 None
ERR772255 MDR-TB lineage2.1;lineage4.3.2 None
ERR4819932 Other lineage4.7 None
ERR9786682 Other lineage4.1.2.1 None
ERR552721 Sensitive lineage4.4.1.1 de
ERR2693245 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR9786627 Other lineage4.1.2.1 None
ERR3797017 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR3416776 Other lineage2.1 None
ERR3797083 RR-TB lineage4.9 None
ERR473277 HR-TB La3;M.canetti;lineage4.9 None
ERR5311100 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR6981971 Sensitive lineage4.4.1.1.1 None
ERR2693231 Other La1.6;La3;lineage4.6.4;lineage4.9 None
SRR6325445 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR15368973 Other lineage4.9 None
ERR4815604 Other None
SRR3675486 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR736856 Sensitive lineage4.9 None
SRR13861153 Other lineage4.9 None
SRR1174897 MDR-TB lineage4.9;lineage9 None
ERR3283030 HR-TB lineage4.9 None
ERR5311078 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR4816999 Other None
SRR28046343 RR-TB lineage3 None
ERR7911201 MDR-TB lineage4.4.1.1.1 za
ERR4817692 HR-TB lineage1.1.2;lineage4 None
SRR6789626 Other None
SRR5341470 MDR-TB lineage4.9;lineage9 None
ERR7737723 MDR-TB lineage4.4.1.1.1 None
ERR4820854 Other lineage4.1.2.1 None
ERR5311082 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9 None
SRR3675481 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR212121 HR-TB lineage4.9;lineage6.3 None
SRR3675561 Other M.canetti;lineage2.1;lineage4.9 None
ERR2229143 RR-TB lineage4.9 None
ERR4811311 Other lineage2.1;lineage4.9;lineage6.3 None
ERR3283044 Other lineage4 None
ERR323053 MDR-TB La2;lineage4.9;lineage9 None
ERR5311089 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675464 HR-TB lineage2.1;lineage4.9;lineage6.3;lineage8 None
ERR7911202 MDR-TB lineage4.4.1.1.1 za
ERR3803779 Sensitive lineage6.1.2 None
ERR4816466 HR-TB lineage4.9 None
ERR9787068 Sensitive lineage6.1.2 None
ERR4816336 Sensitive lineage3 gb
ERR4188350 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR5311099 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR9117709 Other None
ERR3804035 Sensitive lineage6.1.2 None
ERR176766 HR-TB lineage2.1;lineage4.9 None
SRR11342696 MDR-TB lineage4.4.1.1.1 None
ERR9786611 HR-TB lineage4.1.3 None
SRR1172817 Other La3 None
SRR3675581 Other lineage2.1;lineage4.9 None
SRR3675450 HR-TB La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR11342644 MDR-TB lineage4.4.1.1.1 None
SRR1172234 Other lineage4.9 None
SRR9970978 Sensitive La1;lineage4.1.2 None
ERR5311102 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4798493 MDR-TB lineage2.2.1 None
ERR9787136 Sensitive lineage6.1.2 None
SRR1019141 Pre-XDR-TB lineage4.4.1.1.1 None
ERR4816559 MDR-TB lineage4.4.1.1 None
SRR3675517 Other La3;lineage2.1;lineage4.9;lineage6.3 None
ERR6358991 HR-TB lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 None
SRR3675320 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9 None
ERR5311090 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR1183106 RR-TB lineage2.2.1.1 None
ERR4796929 Sensitive lineage4.9 None
ERR502912 Other lineage2.2.1 None
ERR323041 HR-TB M.canetti;lineage2.1 None
SRR12416824 HR-TB lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
SRR13861400 Other lineage4.9 None
SRR1184381 MDR-TB None
SRR3675221 Other lineage4.9 None
SRR3675554 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR26159047 Other lineage4.6.3;lineage4.9 None
SRR28351339 MDR-TB lineage4 None
ERR234659 Other None
ERR2199987 Sensitive lineage4.4.1.1 de
SRR8552928 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR473314 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4814352 Other lineage2.2.1 None
ERR4830495 MDR-TB lineage4.4.1.1.1 None
ERR439986 Sensitive lineage6.1.2 None
ERR9786601 Other lineage4.1.2.1 None
ERR9786671 Other None
SRR12142341 HR-TB lineage2.1 None
ERR9786421 Other lineage4.1.2.1 None
SRR3675487 Other M.canetti;lineage4.9 None
SRR1173633 Other lineage4.9 None
ERR736865 HR-TB lineage4.3.2;lineage4.9 None
ERR9786604 Other None
SRR6045043 Sensitive lineage3 None
SRR3675545 Other La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR3675444 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675232 Other lineage4.1.2.1 None
SRR3675465 Other lineage4.9;lineage6.3 None
SRR6045242 Other lineage2.1;lineage4.9 None
ERR038268 HR-TB La3;M.canetti;lineage4.8;lineage4.9 None
SRR6045952 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR13289765 Sensitive lineage3 None
SRR2101606 Sensitive lineage4.4.1.1.1 None
SRR10315711 MDR-TB lineage4.4.1.1.1 None
SRR13861510 Other lineage4.9 None
ERR3283027 Other lineage2.1;lineage4.9;lineage6.3 None
SRR19304036 Other La3;lineage2.1;lineage4.9;lineage6.3 None
ERR9786569 Other lineage4.8 None
ERR3797029 Other lineage4.9 None
SRR29097026 Other lineage4.9 None
ERR1035239 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR1172310 HR-TB lineage4.9 None
SRR3675275 Other lineage4.9 None
ERR11252736 Other lineage4.9 None
SRR6785267 Other lineage2.2.1 None
ERR3283024 Other La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 None
SRR3742665 HR-TB M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
SRR11342645 MDR-TB lineage4.4.1.1.1 None
ERR2693242 RR-TB lineage2.1;lineage4.9 None
ERR9117721 HR-TB La3;lineage1.1.2 None
ERR4821053 RR-TB lineage3 None
ERR4811142 RR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
ERR323039 HR-TB La2;lineage4.9 None
SRR3675529 Other lineage2.1;lineage4.9;lineage6.3 None
SRR1163221 MDR-TB lineage4.1.2.1 None
ERR2693228 RR-TB lineage4.9 None
SRR20969731 Other lineage2.2.1 None
SRR11349200 MDR-TB lineage4.4.1.1.1 None
SRR3675467 Other lineage2.1;lineage4.9;lineage6.3 None
ERR1873396 Pre-XDR-TB M.canetti;lineage2.2 None
ERR2693254 Other La1.6;La3;lineage4.9 None
SRR3675216 Other lineage2.1;lineage4.9 None
ERR3797015 HR-TB lineage4.9 None
ERR4821655 HR-TB lineage4.9 None
SRR7240033 Other La1.2;La1.8.1 None
ERR405219 HR-TB La1.7;lineage3.1;lineage4 None
ERR4796670 Sensitive lineage3 in
ERR9992613 Pre-XDR-TB lineage4.4.1.1.1 None
ERR3283016 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR3283020 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.9 None
SRR6325447 MDR-TB lineage2.1;lineage4.1.1.1;lineage6.3 None
SRR13837964 Sensitive lineage4.9 None
ERR9787281 Sensitive lineage6.1.2 None
SRR10808805 Other La1;lineage4.9 None
SRR6458421 MDR-TB lineage2.2.1 None
SRR29096150 Other lineage4.9 None
SRR3675236 Other None
ERR176793 Other lineage4.1.1.1 None
SRR5709967 MDR-TB lineage2.2.1 None
ERR2693230 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR9971098 Sensitive lineage4.4.1.1.1 None
SRR9971312 MDR-TB lineage4.4.1.1.1 None
ERR4797201 Other lineage1.2.2.2 None
SRR6045948 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR9971049 MDR-TB lineage4.4.1.1.1 None
ERR760733 MDR-TB lineage4.1.2.1.1 None
SRR1172728 RR-TB La3 None
ERR702406 Other lineage2.1 None
ERR7737804 MDR-TB lineage4.4.1.1.1 None
SAMN02350479 Pre-XDR-TB lineage4.4.1.1.1 za
SRR11349174 MDR-TB lineage4.4.1.1.1 None
ERR473332 Other lineage4.9 None
ERR176751 Other lineage4.9 None
SAMN02053794 MDR-TB lineage4.4.1.1.1 za
SRR26937107 MDR-TB lineage2.2.1 None
SRR5341302 Other La3;lineage2.1;lineage4.9 None
SRR6855815 MDR-TB lineage4.4.1.1.1 None
ERR502532 Other M.canetti;lineage2.1;lineage6.3 None
ERR323043 Other lineage2.1;lineage4.9 None
ERR5311096 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR9786645 Other lineage4.6.2.2 None
SRR3675490 Other lineage2.1;lineage4.9;lineage6.3 None
SRR3675311 Other lineage4.9 None
SRR1180147 Other lineage2.2.1.1 None
SRR7496472 Other lineage4.9 None
SRR9971026 Sensitive lineage4.4.1.1.1 None
ERR3804155 Other lineage4.1.2.1 None
ERR386953 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR11662690 HR-TB lineage4.9 None
ERR3797070 Other lineage4.9 None
SRR20970016 Other lineage2.2 None
ERR9787197 Other None
SRR6789621 Other lineage4.9 None
ERR13289003 Sensitive lineage2.2.1;lineage4.4.1.1.1 None
ERR13289258 MDR-TB lineage4.4.1.1.1 None
SRR7240492 HR-TB La1.7.1 None
SRR1173453 Other lineage4.4.1.1 None
SRR3675243 Other lineage4.9 None
SRR1640750 Other None
SRR3675568 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 None
SRR5341333 Other lineage2.1;lineage4.9 None
SRR6045380 Other lineage2.1;lineage4.9 None
SRR9971003 MDR-TB lineage4.4.1.1.1 None
ERR3283036 Other lineage2.1;lineage4.9 None
ERR4407463 HR-TB None
ERR9786694 Other lineage4.1.2.1 None
ERR4818021 Other La1.2.BCG;La1.8.1 None
ERR176658 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR10315714 MDR-TB lineage4.4.1.1.1 None
ERR4830478 MDR-TB lineage4.4.1.1.1 None
SRR18213713 HR-TB None
ERR4817893 Other La3;lineage4.8 None
ERR3283019 Other lineage2.1;lineage4.9 None
ERR9787139 Other lineage6.3.1 None
ERR2693239 RR-TB M.canetti;lineage2.1;lineage4 None
SRR3742657 Pre-XDR-TB La3;M.canetti;lineage2.2.1 None
ERR736871 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR294248 MDR-TB lineage2.1;lineage4.9 None
ERR736874 Other La3;lineage2.1;lineage4.9 None
SRR1173629 Other lineage2.1;lineage4.9 None
SRR10315713 MDR-TB lineage4.4.1.1.1 None
ERR3797069 Other lineage4.9 None
SRR5535933 Other lineage4.9 None
SRR19303884 Other lineage2.1;lineage6.3 None
ERR4188247 HR-TB lineage4.9 None
SRR20969708 HR-TB lineage2.2 None
ERR5311101 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR833102 MDR-TB lineage4.4.1.1.1 None
ERR124642 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
SRR6044790 Other lineage2.1;lineage4.9 None
ERR3806831 Sensitive lineage6.1.2 None
ERR4811105 HR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
ERR4816551 HR-TB lineage4.1.1.3 None
SRR10809074 Sensitive lineage4.9 None
SRR6046066 Other lineage4.9 None
ERR2027263 Other lineage4 None
ERR3468544 Other lineage2.1;lineage4.9 None
ERR11465802 Other La1.7;lineage4.3.4.1 None
ERR161033 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4798648 MDR-TB lineage3.1.2.2 None
ERR9119138 RR-TB M.canetti;lineage4.3.1;lineage4.9 None
ERR9787051 Sensitive lineage6.1.2 None
SRR1196546 Other lineage4.9 None
SRR6458423 HR-TB lineage2.2.1 None
SRR3675524 Other lineage4.9;lineage6.3 None
ERR278594 HR-TB lineage2.1;lineage4.9 None
ERR9117805 Other lineage4.3.2 None
ERR1023295 MDR-TB M.canetti;lineage2.1;lineage4.1.2.1 None
ERR3283032 Other lineage4.9 None
ERR3804169 HR-TB lineage4.1.3 None
SRR6045290 RR-TB M.canetti;lineage2.1;lineage4.9 None
SRR7535086 Other None
ERR4800341 Other lineage3 None
SRR13423544 Other lineage4.5 None
SRR6325444 MDR-TB M.canetti;lineage2.1;lineage6.3 None
ERR9786998 HR-TB lineage4.1.3 None
ERR736859 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR9787138 Sensitive lineage6.1.2 None
SRR10315560 Sensitive lineage4.4.1.1.1 None
ERR5336148 Other lineage2.1;lineage6.3 None
SRR1173400 Other lineage4.9 None
ERR4797193 HR-TB lineage1.1.2 None
SRR833044 MDR-TB lineage4.4.1.1.1 None
SRR7496509 Other None
SRR1172796 Sensitive lineage2.2.1.2 None