lineage | Count |
---|---|
126 | |
lineage4.9 | 34 |
lineage4.4.1.1.1 | 30 |
lineage4 | 12 |
lineage4.8 | 2 |
lineage4.1.1.3 | 1 |
lineage4.4.1.1 | 9 |
lineage2.2.1 | 15 |
lineage2.2 | 3 |
lineage4.8;La3 | 1 |
lineage4;lineage1.1.2 | 1 |
lineage4.1.1 | 2 |
La1.8.1 | 3 |
lineage4.1.1.2 | 1 |
lineage3 | 6 |
lineage4.1.2.1 | 14 |
lineage4.7 | 2 |
lineage1.1 | 1 |
La2 | 1 |
lineage4.1.2 | 1 |
lineage4.4.1.2 | 1 |
lineage4.3.4.1;La1.7 | 1 |
La1 | 1 |
lineage6 | 10 |
lineage4.1.3 | 3 |
lineage4;lineage3.1 | 1 |
lineage2 | 3 |
lineage1.1.2 | 2 |
lineage1.2.2.2 | 1 |
lineage3.1.2 | 1 |
lineage4.6.1.1 | 1 |
lineage4.3.2 | 2 |
lineage4.1.2.1.1 | 1 |
lineage4.3.4.2.1 | 1 |
lineage4.6.2.2 | 1 |
lineage6.3.1 | 1 |
lineage3.1.2.2;lineage3.1.2.1 | 1 |
lineage2.2.1.2 | 2 |
lineage2.2.1.1 | 2 |
lineage3.1 | 2 |
lineage4.3.3 | 1 |
lineage4.5 | 2 |
lineage2.1 | 2 |
lineage4.9;lineage4.6.3 | 1 |
lineage4.1 | 1 |
spoligotype | Count |
---|---|
None | 310 |
ID | Drug resistance | Lineage | Country iso2 | SRR3675383 | HR-TB | None | SRR3675503 | Sensitive | lineage4.9 | None | ERR176740 | HR-TB | None | ERR176751 | HR-TB | None | SAMN02350479 | Pre-XDR-TB | lineage4.4.1.1.1 | za | ERR212034 | HR-TB | None | ERR4816999 | Other | None | ERR2027263 | Other | lineage4 | None | ERR2229542 | Other | lineage4.8 | None | SRR3675545 | HR-TB | None | ERR4817037 | Other | lineage4.9 | None | ERR4817060 | RR-TB | None | ERR212121 | HR-TB | None | SRR3675572 | Other | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR4816466 | HR-TB | None | SRR3742665 | HR-TB | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | ERR502912 | Other | lineage2.2.1 | None | ERR4816585 | Other | lineage2.2 | None | ERR4817893 | Other | lineage4.8;La3 | None | SAMN02053794 | MDR-TB | lineage4.4.1.1.1 | za | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | SRR7496472 | Other | None | ERR2229143 | Other | lineage4.1.1 | None | ERR4818021 | Other | La1.8.1 | None | ERR234659 | HR-TB | None | ERR4818615 | Other | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR4818394 | Other | lineage4.9 | None | ERR4817538 | Sensitive | lineage3 | None | ERR7911441 | MDR-TB | lineage4.4.1.1.1 | za | ERR7911202 | MDR-TB | lineage4.4.1.1.1 | za | ERR552721 | Sensitive | lineage4.4.1.1 | de | ERR7911201 | MDR-TB | lineage4.4.1.1.1 | za | ERR4819781 | Other | lineage2.2.1 | None | SRR2101606 | Sensitive | lineage4.4.1.1.1 | None | SRR5341302 | HR-TB | None | ERR4820854 | Other | lineage4.1.2.1 | None | SRR5341333 | HR-TB | None | ERR4819932 | Other | lineage4.7 | None | SRR6046152 | Other | lineage4.9 | None | ERR4821053 | Other | lineage3 | None | ERR2693239 | HR-TB | None | ERR2693257 | Other | None | ERR278594 | HR-TB | None | ERR2693231 | Other | None | SRR5341470 | HR-TB | None | ERR2693230 | Other | None | ERR2693254 | Other | None | SRR5535933 | HR-TB | None | ERR2660539 | Other | lineage4.9 | None | ERR4821655 | Sensitive | lineage4 | None | ERR2693232 | Other | lineage4.9 | None | SRR6044855 | Other | lineage4.9 | None | SRR6044790 | HR-TB | None | SRR6044835 | Sensitive | lineage4 | None | SRR6045043 | Sensitive | lineage3 | None | SRR6045952 | HR-TB | None | SRR6046015 | Other | lineage4.9 | None | ERR4830478 | MDR-TB | lineage4.4.1.1.1 | None | SRR6046066 | HR-TB | None | SRR6046305 | Other | lineage4.9 | None | SRR6325444 | HR-TB | None | SRR6046540 | HR-TB | None | ERR4830495 | MDR-TB | lineage4.4.1.1.1 | None | ERR4796670 | Sensitive | lineage3 | in | SRR6325448 | HR-TB | None | SRR6046644 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | ERR4816336 | Sensitive | lineage3 | gb | SRR6325442 | HR-TB | None | ERR3077978 | Other | lineage1.1 | None | SRR6855815 | MDR-TB | lineage4.4.1.1.1 | None | SRR6785267 | Other | lineage2.2.1 | None | ERR294248 | HR-TB | None | SRR6789626 | Other | None | SRR6981971 | Sensitive | lineage4.4.1.1.1 | None | ERR5311099 | HR-TB | None | ERR502532 | HR-TB | None | ERR502524 | HR-TB | La2 | None | ERR5311090 | HR-TB | None | ERR5311081 | HR-TB | None | SRR7496517 | Other | None | SRR7496509 | Other | None | SRR9971312 | MDR-TB | lineage4.4.1.1.1 | None | SRR7496523 | Other | lineage4.7 | None | SRR833102 | MDR-TB | lineage4.4.1.1 | None | SRR833044 | MDR-TB | lineage4.4.1.1.1 | None | SRR9971003 | MDR-TB | lineage4.4.1.1.1 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR7535086 | Other | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | SRR9971049 | MDR-TB | lineage4.4.1.1.1 | None | SRR9971098 | Sensitive | lineage4.4.1.1.1 | None | ERR323053 | HR-TB | None | ERR11488990 | MDR-TB | lineage4.4.1.1.1 | None | SRR9971026 | Sensitive | lineage4.4.1.1.1 | None | ERR323039 | HR-TB | None | ERR323041 | HR-TB | None | ERR323043 | HR-TB | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR323107 | Other | lineage4 | None | ERR3283032 | HR-TB | None | ERR1035157 | Other | lineage4.9 | None | ERR11465802 | Other | lineage4.3.4.1;La1.7 | None | ERR3283010 | Other | La1 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283027 | HR-TB | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR3283024 | Other | None | ERR3283036 | HR-TB | None | ERR3283040 | HR-TB | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3468544 | HR-TB | None | ERR3283051 | Other | lineage4.9 | None | ERR3797016 | HR-TB | None | ERR3797015 | HR-TB | None | ERR3797014 | Other | None | ERR3797017 | Other | None | ERR3797071 | Other | lineage4.9 | None | ERR3797044 | Other | None | ERR3797058 | Other | lineage4.9 | None | ERR3797060 | Other | La1.8.1 | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797061 | Other | None | ERR3803998 | Sensitive | lineage6 | None | ERR3803779 | Sensitive | lineage6 | None | ERR3797069 | Other | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3797082 | Other | lineage4.9 | None | ERR3797083 | HR-TB | None | ERR3804035 | Sensitive | lineage6 | None | ERR3806831 | Sensitive | lineage6 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR405209 | Sensitive | lineage4 | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR4188350 | HR-TB | None | ERR4188247 | HR-TB | None | ERR4796929 | Sensitive | lineage4 | None | ERR4407463 | HR-TB | None | ERR5336148 | Other | None | ERR473332 | Other | lineage4 | None | ERR4769457 | Other | lineage4.9 | None | ERR4811142 | MDR-TB | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4811105 | HR-TB | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR4797201 | Other | lineage1.2.2.2 | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4800341 | Other | lineage3 | None | ERR4810741 | HR-TB | None | ERR4811022 | HR-TB | None | ERR6358991 | HR-TB | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR736867 | HR-TB | None | ERR702406 | HR-TB | None | ERR736856 | HR-TB | lineage4 | None | ERR736865 | HR-TB | None | ERR736848 | HR-TB | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR736874 | HR-TB | None | ERR176549 | Other | lineage4.3.4.2.1 | None | ERR7737723 | MDR-TB | lineage4.4.1.1.1 | None | ERR7737804 | MDR-TB | lineage4.4.1.1.1 | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR8976043 | HR-TB | None | ERR9117709 | HR-TB | None | ERR9786569 | Other | lineage4.8 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR9786515 | Other | lineage4.1.2.1 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786604 | Other | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786627 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | ERR9786998 | HR-TB | lineage4.1.3 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9787051 | Sensitive | lineage6 | None | ERR9787068 | Sensitive | lineage6 | None | ERR9787138 | Sensitive | lineage6 | None | ERR9787136 | Sensitive | lineage6 | None | ERR987722 | HR-TB | None | ERR9787197 | Other | None | ERR9787286 | Sensitive | lineage6 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR9787281 | Sensitive | lineage6 | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | ERR9992613 | Pre-XDR-TB | lineage4.4.1.1.1 | None | SRR10315560 | Sensitive | lineage4.4.1.1.1 | None | SRR1019141 | Pre-XDR-TB | lineage4.4.1.1 | None | SRR11342645 | MDR-TB | lineage4.4.1.1.1 | None | SRR10315711 | MDR-TB | lineage4.4.1.1.1 | None | SRR10315714 | MDR-TB | lineage4.4.1.1.1 | None | SRR10808805 | Sensitive | None | SRR10315713 | MDR-TB | lineage4.4.1.1.1 | None | SRR10315715 | MDR-TB | lineage4.4.1.1.1 | None | SRR10809074 | Sensitive | lineage4 | None | SRR11349174 | MDR-TB | lineage4.4.1.1.1 | None | SRR11342697 | MDR-TB | lineage4.4.1.1.1 | None | SRR1140936 | Pre-XDR-TB | lineage4.4.1.1.1 | None | SRR11349200 | MDR-TB | lineage4.4.1.1.1 | None | SRR1172951 | Other | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1169194 | Other | None | SRR1172214 | HR-TB | lineage4.9 | None | SRR1172234 | Other | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR1172310 | HR-TB | None | SRR1172728 | MDR-TB | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR1172817 | HR-TB | None | SRR1172857 | MDR-TB | None | SRR1173166 | Other | lineage4.9 | None | SRR1173153 | HR-TB | None | SRR1173118 | Other | None | SRR1173363 | HR-TB | None | SRR1173330 | Pre-XDR-TB | lineage4 | None | SRR1173400 | Other | None | SRR1173384 | Other | lineage4 | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173484 | Other | lineage4 | None | SRR1174897 | HR-TB | None | SRR1173629 | Other | None | SRR1173778 | Other | None | SRR1173788 | Other | None | SRR1173706 | Other | lineage4.9 | None | SRR1173767 | HR-TB | lineage4.4.1.1 | None | SRR1175074 | MDR-TB | None | SRR1175127 | Sensitive | lineage2.2.1.2 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR1184294 | HR-TB | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184388 | Other | None | SRR1184381 | MDR-TB | None | SRR1184380 | HR-TB | None | SRR1184372 | MDR-TB | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | SRR1196494 | MDR-TB | None | SRR1196546 | HR-TB | None | SRR1196566 | HR-TB | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1196768 | MDR-TB | None | SRR1196677 | HR-TB | lineage2 | None | SRR12142341 | HR-TB | None | SRR13837666 | Sensitive | lineage4.9 | None | SRR12416824 | HR-TB | None | SRR13423544 | Other | lineage4.5 | None | SRR13837579 | HR-TB | lineage4.9 | None | SRR13837684 | Sensitive | lineage4.9 | None | SRR13837964 | Sensitive | lineage4.9 | None | SRR18003019 | Other | lineage2.2.1 | None | SRR13861153 | Other | lineage4.9 | None | SRR13861332 | Other | lineage4.9 | None | SRR13861386 | HR-TB | lineage4.9 | None | SRR13861400 | Other | lineage4.9 | None | SRR13861528 | HR-TB | lineage4.9 | None | SRR15368973 | Other | None | SRR13861510 | Other | lineage4.9 | None | SRR13861611 | Sensitive | lineage4.9 | None | SRR1640750 | HR-TB | None | SRR1710057 | Other | lineage2.1 | None | SRR19304036 | HR-TB | None | SRR19303884 | HR-TB | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR20969677 | HR-TB | lineage2 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR20970016 | Other | lineage2.2 | None | ERR8025622 | Pre-XDR-TB | lineage2.2.1 | None | SRR5709967 | MDR-TB | lineage2.2.1 | None | ERR10610066 | MDR-TB | lineage4.4.1.1 | None | ERR9806761 | MDR-TB | lineage4.4.1.1 | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | SRR26159047 | Other | lineage4.9;lineage4.6.3 | None | ERR4815604 | HR-TB | None | SRR6325445 | HR-TB | None | SRR3675464 | HR-TB | lineage4.1 | None | ERR176793 | Other | lineage4.1.1 | None | ERR1035239 | HR-TB | None | SRR3675465 | HR-TB | None | SRR3675482 | HR-TB | None | SRR3675488 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | ERR161033 | HR-TB | None | SRR3675486 | HR-TB | None | SRR3416776 | Other | lineage2.1 | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR3675221 | HR-TB | None | ERR2199987 | Sensitive | lineage4.4.1.1 | de | SRR3675501 | HR-TB | None | SRR3675222 | Other | None | SRR3675236 | HR-TB | None | SRR3675234 | Other | None | SRR3675311 | Other | None |
---|