Rv0001 - c.654A>G


Drug resistance types
7 Sensitive 22 RR-TB 48 HR-TB 90 MDR-TB 4 Pre-XDR-TB 0 XDR-TB 90 Other
lineage Counts
lineage Count
lineage4.3.4.2.1 2
La1.7;lineage4.9;lineage7 1
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 4
La2;lineage4.9 1
M.canetti;lineage2.1;lineage4.9 25
La1.8.1 2
lineage2.1;lineage4.9 16
lineage4 3
La3;M.canetti;lineage2.1;lineage4.9 12
lineage4.9 58
M.canetti;lineage2.1;lineage4.9;lineage6.3 6
La3;M.canetti;lineage4.8;lineage4.9 1
M.canetti;lineage4.3.1;lineage4.9 1
lineage2.1;lineage4.3.2;lineage4.9 1
La3;lineage4.9 6
lineage4.6.3;lineage4.9 1
lineage2.1;lineage4.1.1.1;lineage6.3 2
La1;lineage4.9 2
M.canetti;lineage2.1;lineage4.1.2.1 1
lineage4.9;lineage7 1
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 4
La3 2
lineage4.1.3 2
lineage2.2.1 7
lineage2.1;lineage4.3.2 1
La3;lineage2 1
La1;lineage4.1.2 1
M.canetti;lineage4.9 4
M.canetti;lineage2.1 1
lineage3 4
M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 1
La3;M.canetti;lineage3.1 1
La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 2
La3;lineage2.1;lineage4.9;lineage6.3 4
lineage1.1.3.1 1
12
La3;lineage2.1;lineage6.3 1
La3;M.canetti;lineage2.1;lineage3.1 1
La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 1
M.canetti;lineage4.1.1.3;lineage6.3;lineage8 1
lineage2.1 3
La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 1
lineage4.6.1.1 1
lineage2.1;lineage4.9;lineage6.3 10
lineage4.3.4.1 1
M.canetti;lineage1 1
M.canetti;lineage2.1;lineage4.1.4;lineage4.9 2
La1.7;M.canetti;lineage4.9 3
lineage4.1.1.1 1
lineage4.3.2 1
M.canetti;lineage2.1;lineage6.3 1
La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 2
lineage4.9;lineage9 1
M.canetti;lineage2.1;lineage4.3.1;lineage4.9 1
lineage1.1 1
lineage2.1;lineage4.9;lineage6.3;lineage8 1
M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 1
La3;lineage4 1
lineage4.9;lineage6.3 2
La1.7;lineage4.9 4
lineage2.1;lineage6.3 2
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
M.canetti;lineage2.1;lineage4 1
La3;M.canetti;lineage2.2.1 1
lineage2.2.2 1
La3;lineage1.1.2 1
M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
La1.2.BCG;La1.8.1 1
lineage2.1;lineage4.1.4;lineage4.9 1
lineage4.1.2.1 1
lineage2.2 1
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 1
La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 1
La1.7.1;La1.7.X-unk4;lineage7 1
La1.7.1 1
M.canetti;lineage2.1;lineage3 1
La3;M.canetti;lineage4.9 1
La1.2.BCG 1
lineage2.1;lineage2.2;lineage6.3 1
La3;lineage2.1;lineage4.9 1
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
La2;lineage2.2 1
La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
spoligotype Counts
spoligotype Count
None 261
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR176518 Sensitive lineage4.3.4.2.1 None
SRR5341422 HR-TB La1.7;lineage4.9;lineage7 None
SRR6325448 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR1063857 MDR-TB La2;lineage4.9 None
ERR5311089 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR3797016 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675506 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR3797023 MDR-TB La1.8.1 None
SRR3675216 Other lineage2.1;lineage4.9 None
ERR2027263 Other lineage4 None
ERR3283016 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR6046593 Other lineage4.9 None
ERR5311078 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR323064 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR038268 MDR-TB La3;M.canetti;lineage4.8;lineage4.9 None
ERR9119138 RR-TB M.canetti;lineage4.3.1;lineage4.9 None
SRR6045327 Other lineage2.1;lineage4.3.2;lineage4.9 None
ERR3283011 Other La3;lineage4.9 None
SRR6046577 Other lineage4.6.3;lineage4.9 None
ERR323058 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR6325447 MDR-TB lineage2.1;lineage4.1.1.1;lineage6.3 None
SRR10808805 Other La1;lineage4.9 None
SRR3675481 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR4815441 HR-TB lineage4.9 None
ERR1023295 MDR-TB M.canetti;lineage2.1;lineage4.1.2.1 None
ERR3445502 HR-TB lineage4.9;lineage7 None
ERR126600 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR108471 HR-TB lineage4.9 None
ERR3468544 RR-TB lineage2.1;lineage4.9 None
ERR4816478 HR-TB lineage4 None
SRR1172728 RR-TB La3 None
SRR10809074 HR-TB lineage4.9 None
SRR8217918 HR-TB lineage4.9 None
ERR3797064 Other La3;lineage4.9 None
ERR5311099 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR19295647 HR-TB lineage4.9 None
ERR4816656 Other lineage4.9 None
SRR6044876 Sensitive lineage4.9 None
ERR9786611 HR-TB lineage4.1.3 None
SRR13861400 Other lineage4.9 None
ERR323055 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR6458423 HR-TB lineage2.2.1 None
SRR6044790 Other lineage2.1;lineage4.9 None
ERR772255 MDR-TB lineage2.1;lineage4.3.2 None
SRR20969677 HR-TB La3;lineage2 None
SRR9970978 Other La1;lineage4.1.2 None
SRR6045519 MDR-TB M.canetti;lineage4.9 None
ERR323041 MDR-TB M.canetti;lineage2.1 None
ERR5311102 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4797588 MDR-TB lineage3 None
ERR3283017 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 None
ERR4188350 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR126608 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR3675515 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR3283018 HR-TB lineage4.9 None
SRR6045380 Other lineage2.1;lineage4.9 None
ERR473314 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4796929 Sensitive lineage4.9 None
ERR323054 MDR-TB La3;M.canetti;lineage3.1 None
ERR2026697 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
SRR19304036 Other La3;lineage2.1;lineage4.9;lineage6.3 None
ERR323038 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR4811493 HR-TB lineage4.9 None
ERR971389 Other lineage4.9 None
ERR8479578 HR-TB lineage1.1.3.1 None
ERR9786671 Other None
ERR9786604 Other None
ERR9117709 Other None
SRR6789626 Other None
ERR11252736 Other lineage4.9 None
ERR9787197 Other None
SRR3675236 Other None
ERR323040 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR1196583 Other lineage4.9 None
ERR278594 MDR-TB lineage2.1;lineage4.9 None
ERR4810741 HR-TB La3;lineage2.1;lineage6.3 None
SRR6325445 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR176766 MDR-TB lineage2.1;lineage4.9 None
SRR3675275 Other lineage4.9 None
SRR3675581 Other lineage2.1;lineage4.9 None
ERR4811022 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR323034 MDR-TB La3;M.canetti;lineage2.1;lineage3.1 None
ERR2026695 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 None
ERR4817896 HR-TB lineage2.2.1 None
ERR5311100 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675558 MDR-TB M.canetti;lineage4.1.1.3;lineage6.3;lineage8 None
SRR3675561 RR-TB M.canetti;lineage2.1;lineage4.9 None
ERR702406 Other lineage2.1 None
SRR6045242 Other lineage2.1;lineage4.9 None
SRR6044942 HR-TB lineage4.9 None
ERR176741 Other lineage4.9 None
SRR6045555 Other lineage4.9 None
ERR2026698 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
SRR6046644 MDR-TB La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 None
ERR6358755 Other lineage4.6.1.1 None
SRR6045526 Other lineage4.9 None
ERR3283019 Other lineage2.1;lineage4.9 None
SRR6046133 HR-TB lineage4.9 None
ERR176658 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR386953 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR8552928 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR6326069 Pre-XDR-TB lineage4.3.4.1 None
SRR3675461 RR-TB lineage4.9 None
ERR161033 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4811142 RR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
SRR15014655 Other M.canetti;lineage1 None
SRR7496472 Other lineage4.9 None
ERR5311082 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9 None
SRR6046196 Other La1.7;M.canetti;lineage4.9 None
ERR176793 Other lineage4.1.1.1 None
ERR2446566 Other lineage4.9 None
ERR9117805 Other lineage4.3.2 None
ERR3797070 Other lineage4.9 None
SRR1172951 Other lineage4.9 None
SRR1184294 Other lineage4.9 None
SRR1165699 Other lineage4.9 None
ERR4819877 HR-TB lineage4.9 None
ERR126618 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR4817731 HR-TB lineage4.9 None
SRR6325444 MDR-TB M.canetti;lineage2.1;lineage6.3 None
ERR3797028 HR-TB M.canetti;lineage4.9 None
ERR3283036 Other lineage2.1;lineage4.9 None
SRR6044815 RR-TB lineage4.9 None
ERR4819781 Other lineage2.2.1 None
ERR3797047 MDR-TB lineage4.9 None
SRR6785267 Other lineage2.2.1 None
SRR3675450 MDR-TB La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR3797046 HR-TB lineage4.9 None
SRR3675494 RR-TB lineage4.9 None
SRR6046720 HR-TB lineage4.9;lineage9 None
ERR736871 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR3468607 RR-TB lineage4.9 None
SRR3675517 Other La3;lineage2.1;lineage4.9;lineage6.3 None
SRR3675490 Other lineage2.1;lineage4.9;lineage6.3 None
SRR3675508 MDR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR6045952 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR3283057 Sensitive La3;lineage4.9 None
ERR5311083 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675320 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9 None
ERR5311090 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR323033 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR4819422 HR-TB lineage4.9 None
ERR3077978 RR-TB lineage1.1 None
SRR6046485 Other lineage4.9 None
ERR3283021 MDR-TB lineage4.9 None
SRR3675464 MDR-TB lineage2.1;lineage4.9;lineage6.3;lineage8 None
SRR11662690 HR-TB lineage4.9 None
SRR3675568 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 None
SRR3675554 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR3283028 Other La3;lineage4 None
SRR6045053 Other lineage4 None
SRR3675572 Other None
SRR1640750 RR-TB None
SRR18213713 HR-TB None
SRR6045795 Other lineage2.2.1 None
ERR1035239 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675524 Other lineage4.9;lineage6.3 None
SRR3675385 Other La1.7;lineage4.9 None
ERR4798493 MDR-TB lineage2.2.1 None
SRR3675449 RR-TB M.canetti;lineage4.9 None
ERR5336148 Other lineage2.1;lineage6.3 None
SRR3742665 HR-TB M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
SRR1184380 Other lineage2.1;lineage4.9 None
SRR20632814 Sensitive lineage4.9 None
SRR6046514 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR2693239 RR-TB M.canetti;lineage2.1;lineage4 None
SRR3742657 Pre-XDR-TB La3;M.canetti;lineage2.2.1 None
ERR3283027 Other lineage2.1;lineage4.9;lineage6.3 None
SRR6046046 Other lineage4.9 None
SRR3675322 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9 None
ERR5311081 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR3797069 Other lineage4.9 None
SRR18910194 HR-TB lineage2.2.2 None
ERR124652 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR3797083 RR-TB lineage4.9 None
ERR3283055 HR-TB lineage4.9 None
ERR9117721 HR-TB La3;lineage1.1.2 None
ERR4188247 HR-TB lineage4.9 None
ERR5311101 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4820773 HR-TB lineage4.9 None
ERR3797048 Other La3;lineage4.9 None
SRR3675501 Other La1.7;lineage4.9 None
SRR3675492 Other La1.7;lineage4.9 None
ERR124642 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
SRR6046141 Other lineage4.9 None
ERR5311098 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR323063 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR3797060 Other La1.8.1 None
ERR3283031 Other La3;lineage4.9 None
SRR3675545 RR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR3675444 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR1184312 Other lineage2.2.1 None
SRR3675465 Other lineage4.9;lineage6.3 None
ERR4818021 Other La1.2.BCG;La1.8.1 None
ERR4811105 HR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
ERR4811311 Other lineage2.1;lineage4.9;lineage6.3 None
SRR12142341 HR-TB lineage2.1 None
ERR323047 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR323060 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR6046066 Other lineage4.9 None
SRR6045347 Other lineage4.9 None
SRR6046783 Other La1.7;M.canetti;lineage4.9 None
ERR3804169 HR-TB lineage4.1.3 None
SRR11662694 Other lineage4.9 None
ERR323043 Other lineage2.1;lineage4.9 None
SRR3675267 Other La1.7;lineage4.9 None
SRR3675486 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR4816470 HR-TB lineage3 None
SRR23961558 RR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR3797036 HR-TB lineage2.1;lineage4.1.4;lineage4.9 None
ERR5311096 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR1873393 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR5917710 RR-TB lineage4.1.2.1 None
ERR323036 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR3283047 Sensitive La3;lineage4.9 None
SRR6325442 MDR-TB lineage2.1;lineage4.1.1.1;lineage6.3 None
ERR4799513 HR-TB lineage2.2 None
SRR6046540 Other lineage2.1;lineage4.9 None
ERR2229143 RR-TB lineage4.9 None
SRR3675467 Other lineage2.1;lineage4.9;lineage6.3 None
SRR6045887 Other La1.7;M.canetti;lineage4.9 None
ERR6358837 MDR-TB La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR6045290 RR-TB M.canetti;lineage2.1;lineage4.9 None
SRR6045948 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4596910 Sensitive lineage4.9 None
SRR3675518 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR3283042 HR-TB lineage4.9 None
SRR6044875 Other lineage4.9 None
ERR1334034 Other lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 None
ERR2026696 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 None
ERR3445501 HR-TB La1.7.1;La1.7.X-unk4;lineage7 None
ERR736867 Other lineage2.1;lineage4.9 None
ERR4797054 Pre-XDR-TB lineage2.1 None
ERR323044 HR-TB lineage4.3.4.2.1 None
SRR1172817 Other La3 None
SRR3675311 Other lineage4.9 None
SRR7240492 MDR-TB La1.7.1 None
ERR4814536 MDR-TB M.canetti;lineage2.1;lineage3 None
SRR7496509 Other None
SRR1184381 MDR-TB None
SRR1196768 MDR-TB None
SRR28044873 Pre-XDR-TB lineage3 None
ERR4188342 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR2693229 RR-TB La3;M.canetti;lineage4.9 None
ERR4769497 Other La1;lineage4.9 None
ERR4798262 HR-TB La1.2.BCG None
ERR4800341 HR-TB lineage3 None
ERR8976043 MDR-TB lineage2.1;lineage2.2;lineage6.3 None
SRR3675549 Other lineage4.9 None
ERR2693242 RR-TB lineage2.1;lineage4.9 None
ERR4811075 Other lineage2.1;lineage4.9;lineage6.3 None
ERR294248 MDR-TB lineage2.1;lineage4.9 None
ERR736874 Other La3;lineage2.1;lineage4.9 None
SRR12416824 HR-TB lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
ERR1063839 MDR-TB La2;lineage2.2 None
SRR19303884 Other lineage2.1;lineage6.3 None
ERR5162090 RR-TB lineage4.9 None
ERR124651 MDR-TB La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
ERR4816466 HR-TB lineage4.9 None
SRR3675529 Other lineage2.1;lineage4.9;lineage6.3 None
SRR3675487 MDR-TB M.canetti;lineage4.9 None