Rv0668 - c.570G>A
Drug resistance types
9 Sensitive
5 RR-TB
37 HR-TB
14 MDR-TB
1 Pre-XDR-TB
1 XDR-TB
90 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 37 |
| lineage4 | 3 |
| lineage3.1.2.2 | 1 |
| La3;lineage4.3.4 | 1 |
| lineage4.9;lineage9 | 3 |
| M.canetti;lineage1 | 1 |
| lineage4.9;lineage6.3 | 4 |
| lineage4.1.3 | 2 |
| lineage2.2.1.1 | 5 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| lineage2.1;lineage6.3 | 2 |
| lineage4.9;lineage7 | 3 |
| lineage4.6.2.2 | 4 |
| lineage4.1.2.1 | 9 |
| lineage4.2;lineage4.9 | 3 |
| lineage2.2 | 3 |
| lineage4.6.3;lineage4.9 | 2 |
| 11 | |
| La1.7;lineage4.9 | 2 |
| lineage4.7 | 2 |
| lineage2.1;lineage4.9 | 11 |
| La1.2.BCG;La1.8.1 | 1 |
| lineage3.1;lineage9 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage6.1.1 | 2 |
| M.canetti;lineage4.9;lineage9 | 1 |
| La2;lineage4.9 | 1 |
| lineage2.2.1 | 10 |
| lineage3 | 2 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| lineage4.2;lineage4.8.1;lineage4.9 | 2 |
| lineage2.1;lineage4.9;lineage6.3 | 5 |
| La1.2.BCG | 1 |
| lineage4.3.2;lineage4.9 | 1 |
| La1.7;M.canetti;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| La3;lineage4.9 | 1 |
| lineage3.1.2.1;lineage3.1.2.2 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| La1.7;lineage4.2 | 1 |
| lineage1.1.1 | 1 |
| lineage4.1 | 1 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| lineage4.8 | 2 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| lineage4.3.4.2.1 | 1 |
| La1.7.X-unk4;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 157 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6045526 | Other | lineage4.9 | None | SRR6046066 | Other | lineage4.9 | None | ERR2027263 | Other | lineage4 | None | SRR5341330 | Other | lineage4.9 | None | SRR6045347 | Other | lineage4.9 | None | ERR4769450 | Other | lineage4.9 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR161039 | HR-TB | La3;lineage4.3.4 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | SRR15014655 | Other | M.canetti;lineage1 | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | SRR1181091 | Other | lineage2.2.1.1 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | SRR29050859 | Other | lineage4.9 | None | SRR1184024 | RR-TB | lineage2.2.1.1 | None | SRR1183111 | HR-TB | lineage4.9 | None | ERR9786645 | Other | lineage4.6.2.2 | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | SRR7496472 | Other | lineage4.9 | None | SRR6079962 | HR-TB | lineage2.2.1.1 | None | ERR3804155 | Other | lineage4.1.2.1 | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR6046026 | RR-TB | lineage4.2;lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | SRR20970016 | Other | lineage2.2 | None | SRR26159047 | Other | lineage4.6.3;lineage4.9 | None | ERR9787197 | Other | None | SRR10808730 | Other | lineage4.9 | None | ERR4829606 | Sensitive | lineage4.1.2.1 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR212034 | HR-TB | La1.7;lineage4.9 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | SRR7496523 | Other | lineage4.7 | None | ERR9786604 | Other | None | SRR3675457 | Other | lineage4.9 | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | SRR25827418 | XDR-TB | lineage3.1;lineage9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR3675275 | Other | lineage4.9 | None | ERR9787014 | Other | lineage6.1.1 | None | SRR3675270 | Other | lineage4.9 | None | SRR18213713 | HR-TB | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | SRR3675214 | Other | lineage4.9 | None | SRR5535933 | Other | lineage4.9 | None | ERR9786627 | Other | lineage4.1.2.1 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR4815604 | Other | None | ERR2446566 | Other | lineage4.9 | None | SRR6789626 | Other | None | ERR4798504 | RR-TB | lineage3 | None | ERR161037 | Other | lineage4.9 | None | ERR3797043 | Sensitive | lineage4.9 | None | SRR29096150 | Other | lineage4.9 | None | SRR3675236 | Other | None | ERR9117709 | Other | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR4799513 | HR-TB | lineage2.2 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR29097066 | Sensitive | lineage4.9 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | ERR4798262 | HR-TB | La1.2.BCG | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | ERR9786642 | Other | lineage4.1.2.1 | None | SRR3675221 | Other | lineage4.9 | None | ERR987722 | MDR-TB | None | ERR4814352 | Other | lineage2.2.1 | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | SRR1180226 | HR-TB | lineage4.9 | None | ERR4819781 | Other | lineage2.2.1 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | SRR6046397 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR6046878 | Other | lineage4.9 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR3283042 | Other | lineage4.9 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | SRR1172310 | HR-TB | lineage4.9 | None | ERR987729 | HR-TB | lineage3.1.2.1;lineage3.1.2.2 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | SRR6045053 | Other | lineage4 | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | SRR6046046 | Other | lineage4.9 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | ERR294266 | HR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | SRR6785263 | Sensitive | lineage2.2.1 | None | ERR3283044 | Other | lineage4 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | ERR4816466 | HR-TB | lineage4.9 | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | SRR8217918 | HR-TB | lineage4.9 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR7496509 | Other | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | ERR3799304 | Other | lineage6.1.1 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR23961559 | Other | La1.7;lineage4.2 | None | ERR3283018 | HR-TB | lineage4.9 | None | ERR6359082 | Other | lineage4.9 | None | SRR11662690 | HR-TB | lineage4.9 | None | ERR3797070 | Other | lineage4.9 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | ERR2514692 | Other | None | ERR9786671 | Other | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | SRR29231479 | RR-TB | lineage4.9 | None | ERR9786440 | Other | lineage4.1 | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | SRR6046382 | Sensitive | lineage2.2.1 | None | SRR17832802 | HR-TB | lineage3 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR29096410 | Other | lineage4.9 | None | ERR9786569 | Other | lineage4.8 | None | ERR11082350 | MDR-TB | lineage4.6.2.2 | None | SRR29097026 | Other | lineage4.9 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR6785267 | Other | lineage2.2.1 | None | ERR387051 | Other | lineage4.9 | None | ERR161034 | HR-TB | lineage4.3.4.2.1 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | ERR3797069 | Other | lineage4.9 | None | ERR4819932 | Other | lineage4.7 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4799025 | Other | lineage4.8 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None |
|---|
