Rv3457c - c.204G>T

Note: the variant has been searched for in a non-representative convenience dataset of samples from the ENA. This sampleset may contain overrepresentation in certain categories such as geographic source, drug resistance type and lineage. Interpretation of variant frequencies should be performed cautiously with this in mind.
Drug resistance types
16 Sensitive 3 RR-TB 19 HR-TB 8 MDR-TB 1 Pre-XDR-TB 2 XDR-TB 17 Other
lineage Counts
lineage Count
lineage4.9 25
La1.7;lineage4.9 3
lineage2.1;lineage4.9;lineage7 1
M.canetti;lineage2.2 2
lineage4.3.4 1
lineage4.4.1.1.1 1
lineage4.1.1.3 4
M.canetti;lineage2.2.2;lineage6.2 2
La1.7.X-unk4;lineage4.9 1
lineage4 2
lineage2.1;lineage4.9 2
lineage1;lineage4.9 1
lineage2.2.1 2
lineage4.1.2.1 2
lineage4.8 2
La1.7.1;lineage4.9 1
lineage3 1
1
La1.7.1 1
lineage4.9;lineage7 4
M.canetti;lineage4.9;lineage9 1
lineage2.2.1;lineage4 1
lineage5.2 1
La1.7.1;La1.7.X-unk4 1
La1.7.1;La1.7.X-unk4;lineage7 1
lineage6.1.3 1
La1.7;lineage4.2 1
spoligotype Counts
spoligotype Count
None 66
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR176778 HR-TB lineage4.9 None
ERR212034 HR-TB La1.7;lineage4.9 None
SRR3675555 HR-TB lineage2.1;lineage4.9;lineage7 None
SRR6045002 RR-TB lineage4.9 None
SRR6046878 Other lineage4.9 None
ERR4831545 XDR-TB M.canetti;lineage2.2 None
SRR1175513 Sensitive lineage4.9 None
ERR4769444 HR-TB lineage4.9 None
SRR6045359 Sensitive lineage4.9 None
ERR736817 HR-TB lineage4.3.4 None
SRR1181215 Sensitive lineage4.4.1.1.1 None
ERR2199988 MDR-TB lineage4.1.1.3 None
ERR387051 Other lineage4.9 None
ERR4831546 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
ERR550636 MDR-TB lineage4.1.1.3 None
SRR3675520 Other La1.7.X-unk4;lineage4.9 None
SRR6045053 Other lineage4 None
ERR323108 HR-TB La1.7;lineage4.9 None
SRR3675495 Other lineage2.1;lineage4.9 None
ERR1035138 MDR-TB lineage2.1;lineage4.9 None
ERR181887 Other lineage4.9 None
ERR323045 HR-TB lineage1;lineage4.9 None
SRR6045347 Other lineage4.9 None
SRR6046593 Other lineage4.9 None
ERR1873492 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
ERR4799478 Pre-XDR-TB lineage2.2.1 None
ERR6866125 Sensitive lineage4.1.2.1 None
SRR29231479 RR-TB lineage4.9 None
SRR10315751 MDR-TB lineage4.8 None
ERR1063859 HR-TB La1.7.1;lineage4.9 None
ERR9896144 Other lineage3 None
SRR12006550 Sensitive None
ERR176779 HR-TB lineage4.9 None
ERR9786619 Sensitive lineage4.8 None
SRR1180977 Sensitive lineage4.9 None
SRR1792478 HR-TB La1.7.1 None
SRR8217918 HR-TB lineage4.9 None
SRR1180413 Sensitive lineage4.9 None
ERR176560 HR-TB La1.7;lineage4.9 None
ERR4769442 Sensitive lineage4.9 None
SRR10808730 Other lineage4.9 None
ERR7911670 XDR-TB M.canetti;lineage2.2 None
SRR3675539 HR-TB lineage4.9;lineage7 None
ERR3445502 Sensitive lineage4.9;lineage7 None
ERR736875 HR-TB lineage4.9 None
ERR4769439 HR-TB lineage4.9 None
SRR3675270 Other lineage4.9 None
ERR1063856 HR-TB M.canetti;lineage4.9;lineage9 None
ERR550637 MDR-TB lineage4.1.1.3 None
SRR6046046 Other lineage4.9 None
SRR3675231 MDR-TB lineage4.9;lineage7 None
SRR1181237 Sensitive lineage2.2.1;lineage4 None
SRR29231548 MDR-TB lineage5.2 None
SRR15368973 Other lineage4.9 None
ERR2446566 Other lineage4.9 None
SAMEA2533358 MDR-TB lineage4.1.1.3 None
ERR3445503 Other La1.7.1;La1.7.X-unk4 None
ERR9786656 Sensitive lineage4.1.2.1 None
SRR1181349 Sensitive lineage4 None
ERR4596910 Sensitive lineage4.9 None
SRR6046382 Sensitive lineage2.2.1 None
ERR3445501 HR-TB La1.7.1;La1.7.X-unk4;lineage7 None
SRR3675456 RR-TB lineage4.9;lineage7 None
ERR1023236 Other lineage6.1.3 None
SRR23961559 Other La1.7;lineage4.2 None
ERR4815815 Sensitive lineage4.9 None