Rv3919c - c.87delC
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
0 Sensitive
2 RR-TB
37 HR-TB
66 MDR-TB
7 Pre-XDR-TB
5 XDR-TB
54 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage3 | 41 |
| lineage1.2.2.2 | 10 |
| lineage1.1.2 | 8 |
| lineage4.1.2.1 | 4 |
| lineage1.2.2.1 | 2 |
| lineage2.2.1 | 12 |
| lineage2.2.1.2 | 1 |
| lineage4.8 | 10 |
| lineage3.1.1 | 9 |
| lineage5.1.4 | 1 |
| lineage4.6.5 | 2 |
| lineage4.2.1.1;lineage4.3.3 | 1 |
| lineage4.1.1 | 2 |
| lineage2.2.1;lineage4.8 | 1 |
| lineage2.2.1;lineage3;lineage4 | 1 |
| lineage4.1.1.1 | 7 |
| lineage1.2.1.2 | 3 |
| lineage7 | 1 |
| lineage2.1 | 1 |
| lineage3.1 | 1 |
| lineage4.6.2.2 | 6 |
| lineage4.2.2.2 | 3 |
| lineage1.2.2.2;lineage4.8 | 1 |
| lineage4.9 | 3 |
| lineage4.2.1.1 | 12 |
| lineage4.1.2 | 4 |
| lineage1.1.1.1 | 3 |
| lineage2.2.1.2;lineage3.1.2.1 | 1 |
| lineage1.2.1.2.1 | 4 |
| lineage2.2.1.1 | 1 |
| lineage3.1.2 | 3 |
| lineage4.3.3 | 5 |
| lineage2.2.1;lineage3 | 1 |
| lineage3.1.2.1 | 3 |
| lineage3;lineage4 | 1 |
| lineage3.1.3 | 1 |
| lineage4.4.1.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 171 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4800055 | Other | lineage3 | in | ERR4819827 | Other | lineage1.2.2.2 | gb | SRR29772523 | MDR-TB | lineage1.1.2 | None | ERR4829748 | HR-TB | lineage4.1.2.1 | None | SRR8380925 | HR-TB | lineage1.2.2.1 | in | ERR4810728 | Other | lineage2.2.1 | cn | ERR4810780 | Other | lineage2.2.1 | None | ERR718324 | Other | lineage2.2.1.2 | th | SRR28044702 | XDR-TB | lineage3 | None | ERR1023408 | MDR-TB | lineage3 | None | ERR038747 | MDR-TB | lineage4.8 | ug | ERR2516594 | MDR-TB | lineage3.1.1 | nl | ERR2516567 | MDR-TB | lineage3.1.1 | nl | ERR4815684 | Other | lineage5.1.4 | gb | ERR2512802 | HR-TB | lineage3 | gb | ERR2514126 | Other | lineage4.6.5 | gb | ERR137193 | Other | lineage3 | ru | SRR6045177 | HR-TB | lineage3 | gb | SRR6339644 | MDR-TB | lineage3 | au | SRR26936971 | MDR-TB | lineage2.2.1 | None | SRR13232729 | MDR-TB | lineage4.2.1.1;lineage4.3.3 | None | SRR22251197 | Other | lineage3 | None | SRR26112022 | HR-TB | lineage4.1.2.1 | None | ERR9027241 | MDR-TB | lineage3.1.1 | None | ERR4024776 | Other | lineage4.1.1 | None | ERR3470621 | Other | lineage3 | None | SRR14801488 | Other | lineage2.2.1;lineage4.8 | None | ERR4819960 | Other | lineage3 | None | SRR25827749 | XDR-TB | lineage2.2.1;lineage3;lineage4 | None | ERR10465988 | Other | lineage3 | None | SRR6045793 | HR-TB | lineage3.1.1 | None | SRR12634606 | Other | lineage4.1.1.1 | None | ERR13291402 | Other | lineage1.2.1.2 | None | ERR4820589 | Other | lineage3 | None | SRR28046244 | HR-TB | lineage3 | None | ERR4818342 | Other | lineage3 | None | SRR29093522 | MDR-TB | lineage2.2.1 | None | SRR18714973 | HR-TB | lineage4.8 | None | ERR159959 | Other | lineage7 | None | ERR11049930 | HR-TB | lineage1.2.2.1 | None | ERR9119732 | MDR-TB | lineage2.2.1 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | SRR14801735 | Other | lineage3 | None | SRR29289301 | MDR-TB | lineage1.1.2 | None | ERR6866081 | Other | lineage4.1.1 | None | ERR16022308 | Pre-XDR-TB | lineage3 | None | SRR1173093 | Other | lineage1.2.2.2 | None | ERR2510357 | MDR-TB | lineage3 | pk | ERR6362636 | MDR-TB | lineage2.2.1 | None | SRR11662503 | MDR-TB | lineage2.1 | None | ERR4796534 | HR-TB | lineage3.1 | in | ERR4799138 | Other | lineage1.2.2.2 | in | ERR4872126 | MDR-TB | lineage4.6.2.2 | None | SRR13180354 | MDR-TB | lineage4.2.2.2 | None | SRR10869315 | MDR-TB | lineage2.2.1 | None | ERR13284373 | MDR-TB | lineage4.2.2.2 | None | ERR11067724 | Pre-XDR-TB | lineage1.2.2.2;lineage4.8 | None | ERR2707068 | RR-TB | lineage4.9 | cd | ERR13284443 | MDR-TB | lineage4.2.1.1 | None | SAMN02414924 | MDR-TB | lineage3 | se | SRR6797778 | MDR-TB | lineage1.2.2.2 | None | SRR1173584 | Other | lineage1.2.2.2 | None | ERR11488980 | MDR-TB | lineage4.1.2 | None | ERR4828339 | HR-TB | lineage1.1.1.1 | vn | ERR8665965 | MDR-TB | lineage4.2.1.1 | None | ERR8665966 | MDR-TB | lineage4.2.1.1 | None | SRR1163239 | MDR-TB | lineage3.1.1 | None | SRR25827439 | XDR-TB | lineage2.2.1.2;lineage3.1.2.1 | None | ERR4816817 | Other | lineage3 | gb | ERR4818168 | Other | lineage3 | gb | SRR18715028 | HR-TB | lineage4.8 | None | SRR3724669 | Other | lineage3 | None | SRR26056461 | HR-TB | lineage1.2.2.2 | None | ERR12554715 | Other | lineage4.9 | None | SRR29440810 | Other | lineage1.2.1.2.1 | None | SRR10147684 | MDR-TB | lineage3 | None | SRR5067338 | Other | lineage2.2.1.1 | vn | DRR473958 | Other | lineage2.2.1 | None | SRR5125075 | MDR-TB | lineage3 | None | SRR7068995 | HR-TB | lineage3 | None | SRR29052650 | MDR-TB | lineage4.1.1.1 | None | ERR4818627 | Other | lineage3 | None | SRR18714798 | HR-TB | lineage4.8 | None | SRR23340060 | MDR-TB | lineage4.2.1.1 | None | SRR23340068 | MDR-TB | lineage4.2.1.1 | None | ERR9119532 | MDR-TB | lineage4.6.2.2 | None | SRR10147699 | MDR-TB | lineage3 | None | SRR16089687 | Other | lineage1.2.1.2 | None | SRR29231557 | MDR-TB | lineage4.1.2 | None | SRR29231440 | HR-TB | lineage3.1.2 | None | ERR13266720 | MDR-TB | lineage3 | None | ERR4872088 | MDR-TB | lineage4.6.2.2 | None | ERR2516811 | MDR-TB | lineage4.2.1.1 | gb | SRR1163213 | MDR-TB | lineage3 | None | ERR11080875 | MDR-TB | lineage4.2.1.1 | None | ERR13289911 | HR-TB | lineage3 | None | SRR22249781 | Other | lineage1.2.1.2.1 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | SRR21239858 | Other | lineage4.3.3 | None | SRR8758893 | MDR-TB | lineage4.1.1.1 | None | ERR13290696 | MDR-TB | lineage1.2.1.2 | None | SRR23340031 | Pre-XDR-TB | lineage4.2.1.1 | None | SRR13583494 | HR-TB | lineage1.2.2.2 | None | SRR28239871 | HR-TB | lineage4.8 | None | SRR18715207 | HR-TB | lineage4.8 | None | SRR21239920 | Other | lineage4.3.3 | None | SRR21239975 | Other | lineage4.3.3 | None | SRR1163480 | MDR-TB | lineage3 | None | SRR18715428 | HR-TB | lineage4.8 | None | ERR13266681 | HR-TB | lineage1.1.2 | None | ERR10680194 | MDR-TB | lineage4.8 | None | SRR26936945 | MDR-TB | lineage2.2.1 | None | SRR25827497 | XDR-TB | lineage2.2.1;lineage3 | None | SRR7070618 | Other | lineage4.6.5 | None | ERR13292170 | MDR-TB | lineage4.1.1.1 | None | ERR3470683 | Other | lineage4.1.1.1 | None | ERR4831521 | HR-TB | lineage1.1.2 | pk | ERR13289828 | HR-TB | lineage3.1.1 | None | SRR25827433 | Pre-XDR-TB | lineage3.1.2.1 | None | ERR11043668 | Other | lineage4.6.2.2 | None | SRR21240105 | Other | lineage4.3.3 | None | SRR21690133 | Other | lineage3 | None | ERR13432060 | MDR-TB | lineage3.1.1 | None | SRR29231710 | RR-TB | lineage4.9 | None | SAMN02414863 | MDR-TB | lineage3.1.1 | se | SAMN02599077 | Other | lineage1.2.2.2 | in | SRR28045534 | Other | lineage3.1.2 | None | ERR5917752 | MDR-TB | lineage4.2.1.1 | by | ERR5897105 | HR-TB | lineage3.1.2.1 | None | ERR2707000 | MDR-TB | lineage4.1.2 | cd | ERR11489007 | MDR-TB | lineage4.1.2 | None | ERR2600415 | HR-TB | lineage4.1.2.1 | None | ERR4814738 | Other | lineage3 | gb | ERR4819427 | HR-TB | lineage1.2.1.2.1 | gb | ERR2512993 | HR-TB | lineage3 | gb | ERR234695 | Other | lineage3;lineage4 | ru | SRR1163108 | MDR-TB | lineage3.1.1 | None | SRR16088012 | HR-TB | lineage4.8 | None | ERR9030348 | MDR-TB | lineage1.1.2 | None | SRR18909922 | MDR-TB | lineage4.1.1.1 | None | SRR5073841 | Other | lineage1.1.1.1 | vn | SRR23402849 | MDR-TB | lineage4.1.2.1 | None | ERR4816492 | Other | lineage3 | None | ERR4830765 | MDR-TB | lineage3 | ir | ERR4830779 | MDR-TB | lineage3 | ir | SRR14519700 | Other | lineage1.2.1.2.1 | None | ERR9119494 | MDR-TB | lineage4.6.2.2 | None | SRR21240152 | Other | lineage4.3.3 | None | SRR22424808 | HR-TB | lineage3.1.2.1 | None | ERR13290998 | MDR-TB | lineage2.2.1 | None | SRR28239958 | HR-TB | lineage4.8 | None | ERR9030303 | MDR-TB | lineage1.1.2 | None | SRR12882710 | HR-TB | lineage3.1.3 | None | SRR24827293 | MDR-TB | lineage4.1.1.1 | None | ERR4816579 | Other | lineage3 | None | SRR29050693 | HR-TB | lineage1.2.2.2 | None | SRR28045912 | Other | lineage1.1.2 | None | SRR25340924 | HR-TB | lineage1.2.2.2 | None | SRR5341332 | Pre-XDR-TB | lineage3 | None | SRR23340066 | MDR-TB | lineage4.2.1.1 | None | SRR23340030 | Pre-XDR-TB | lineage4.2.1.1 | None | SRR5341411 | Pre-XDR-TB | lineage3 | None | ERR13267670 | Other | lineage4.6.2.2 | None | SRR29017273 | HR-TB | lineage1.1.1.1 | None | ERR11083004 | MDR-TB | lineage4.2.2.2 | None | SRR10500313 | HR-TB | lineage1.1.2 | None | ERR16022311 | MDR-TB | lineage3 | None | ERR16022281 | MDR-TB | lineage3 | None | SRR23340038 | XDR-TB | lineage4.2.1.1 | None | ERR4797454 | Other | lineage3.1.2 | in | SRR21689960 | HR-TB | lineage4.4.1.2 | None |
|---|
