Rv1819c - c.-214G>A
Drug resistance types
1 Sensitive
1 RR-TB
20 HR-TB
8 MDR-TB
2 Pre-XDR-TB
1 XDR-TB
49 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.2.1 | 6 |
| La3;lineage2 | 1 |
| lineage2.1 | 2 |
| lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | 1 |
| lineage4.6.2.2 | 1 |
| lineage4.1.1.1 | 2 |
| 10 | |
| lineage4.9;lineage6.3 | 3 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| lineage4.9 | 8 |
| La1.7;M.canetti;lineage4.9 | 1 |
| lineage2.2.1 | 4 |
| lineage3 | 3 |
| lineage6.3.1 | 1 |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La3;lineage4.9 | 1 |
| lineage2.1;lineage6.3 | 2 |
| lineage4.8 | 2 |
| La3;lineage3 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 3 |
| lineage4.6.1.1 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 5 |
| lineage2.1;lineage4.9 | 3 |
| lineage2.2.1;lineage3 | 1 |
| lineage2.2.1;lineage6.3 | 1 |
| lineage4.4.1.1 | 1 |
| lineage4.1.3 | 2 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| La3;lineage2.1;lineage4.9 | 1 |
| lineage4.1.1.3 | 1 |
| La3;lineage4.8 | 1 |
| lineage1.1.2 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 1 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| M.canetti;lineage4.9 | 1 |
| lineage4.1.2 | 1 |
| La3;lineage2.2.1 | 1 |
| lineage3.1.2.1 | 1 |
| La3;lineage2.1;lineage6.3 | 1 |
| lineage4.7 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 82 |
Geographic prevalence
Country level data for this variant is available for 1 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR3804155 | Other | lineage4.1.2.1 | None | SRR20969677 | HR-TB | La3;lineage2 | None | ERR4797054 | Pre-XDR-TB | lineage2.1 | None | ERR6358991 | HR-TB | lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786617 | Other | lineage4.1.1.1 | None | ERR9786671 | Other | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR234659 | HR-TB | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | SRR25827682 | Other | None | SRR7496517 | Other | None | ERR9787197 | Other | None | SRR28119805 | Other | lineage4.9 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4800341 | HR-TB | lineage3 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR18003019 | Other | lineage2.2.1 | None | SRR26399973 | Other | La3;lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | ERR9786569 | Other | lineage4.8 | None | SRR6044942 | HR-TB | lineage4.9 | None | ERR1023302 | MDR-TB | La3;lineage3 | None | ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR4811311 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR5341333 | HR-TB | lineage2.1;lineage4.9 | None | SRR25827497 | XDR-TB | lineage2.2.1;lineage3 | None | SRR28119811 | Other | lineage2.2.1;lineage6.3 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | SRR26159043 | Other | lineage4.9 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | ERR3797070 | Other | lineage4.9 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR4814352 | Other | lineage2.2.1 | None | ERR3283042 | HR-TB | lineage4.9 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR9786694 | Other | lineage4.1.2.1 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | ERR11465024 | Other | lineage4.1.1.3 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR3283018 | HR-TB | lineage4.9 | None | SRR25827507 | MDR-TB | lineage4.1.1.1 | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | ERR9786604 | Other | None | ERR4815604 | Other | None | SRR6789626 | Other | None | ERR4816999 | Other | None | SRR28119777 | Other | lineage4.9 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | ERR4817893 | Other | La3;lineage4.8 | None | SRR25827687 | MDR-TB | lineage1.1.2 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3797069 | Other | lineage4.9 | None | ERR4817735 | Other | lineage4.8 | None | SRR5341332 | Pre-XDR-TB | lineage3 | None | SRR6046644 | MDR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | SRR12142341 | HR-TB | lineage2.1 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | SRR8552928 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | ERR4819781 | Other | lineage2.2.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR4818347 | Other | lineage4.1.2 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR26937071 | MDR-TB | La3;lineage2.2.1 | None | ERR4796604 | Sensitive | lineage3.1.2.1 | in | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR4817060 | Other | None | ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None | ERR4819932 | Other | lineage4.7 | None | ERR4811142 | RR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None |
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