lineage | Count |
---|---|
123 | |
lineage4 | 8 |
lineage2.2.1 | 10 |
lineage2.2 | 5 |
lineage4.7 | 1 |
lineage3 | 2 |
lineage4.9 | 8 |
lineage4.2.1 | 1 |
La2 | 1 |
lineage2 | 2 |
lineage1.2.2.2 | 1 |
lineage4.3.4.2.1 | 2 |
lineage1.1.2 | 1 |
lineage4.6.2.2 | 1 |
lineage4.3.3 | 3 |
lineage3.1 | 2 |
lineage2.2.1.1 | 1 |
lineage4.1.1 | 1 |
lineage4.5 | 1 |
lineage9;lineage3.1 | 1 |
lineage4.1.1.1 | 1 |
lineage6.3;lineage2.2.1 | 1 |
lineage2.1 | 2 |
lineage6.3;lineage4.9;lineage2.1 | 1 |
spoligotype | Count |
---|---|
None | 180 |
ID | Drug resistance | Lineage | Country iso2 | SRR3675234 | Other | None | SRR3675236 | HR-TB | None | ERR212034 | HR-TB | None | SRR3675311 | Other | None | ERR176651 | HR-TB | None | SRR3675502 | Other | None | ERR212001 | HR-TB | None | ERR176740 | HR-TB | None | SRR3675510 | Other | None | SRR3675550 | Other | None | SRR3675574 | HR-TB | None | ERR212123 | Other | None | ERR212125 | HR-TB | lineage4 | None | ERR212121 | HR-TB | None | ERR212138 | HR-TB | lineage4 | None | ERR4816466 | HR-TB | None | SRR3742665 | HR-TB | None | SRR3675571 | HR-TB | None | ERR502912 | Other | lineage2.2.1 | None | ERR4816585 | Other | lineage2.2 | None | ERR4816656 | HR-TB | None | ERR1035162 | Other | None | SRR7496472 | Other | None | ERR2514692 | Other | None | ERR234659 | HR-TB | None | ERR4819781 | Other | lineage2.2.1 | None | ERR4818929 | HR-TB | None | SRR5341418 | Other | None | SRR5341470 | HR-TB | None | ERR2514821 | Other | lineage2.2.1 | None | ERR4819932 | Other | lineage4.7 | None | SRR5341332 | Pre-XDR-TB | lineage3 | None | ERR2693231 | Other | None | SRR5341302 | HR-TB | None | SRR5341333 | HR-TB | None | SRR6044790 | HR-TB | None | ERR2693230 | Other | None | ERR2693254 | Other | None | ERR2693257 | Other | None | SRR6045526 | HR-TB | None | SRR6045519 | HR-TB | None | SRR6045555 | HR-TB | None | ERR2693227 | Other | lineage4.9 | None | SRR6046133 | HR-TB | None | ERR2693232 | Other | lineage4.9 | None | SRR6044838 | Other | lineage4.9 | None | SRR6044835 | Sensitive | lineage4 | None | SRR6044855 | Other | lineage4.9 | None | SRR6046514 | HR-TB | None | SRR6046066 | HR-TB | None | SRR6046482 | HR-TB | None | SRR6045327 | HR-TB | None | SRR6046397 | Other | None | ERR502532 | HR-TB | None | SRR6046644 | HR-TB | None | SRR6046824 | HR-TB | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | SRR6785262 | Sensitive | lineage4.2.1 | None | SRR6832787 | RR-TB | lineage2.2.1 | None | SRR6046540 | HR-TB | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR294266 | HR-TB | None | ERR502524 | HR-TB | La2 | None | ERR502889 | Other | None | SRR8217918 | HR-TB | None | ERR502908 | HR-TB | lineage2.2.1 | None | ERR067681 | HR-TB | None | SRR7496509 | Other | None | SRR7496517 | Other | None | ERR323039 | HR-TB | None | ERR323043 | HR-TB | None | ERR1034634 | HR-TB | None | ERR133986 | HR-TB | None | ERR1063858 | HR-TB | None | ERR1034652 | Other | None | ERR1063862 | HR-TB | None | ERR1063859 | HR-TB | None | ERR3283021 | HR-TB | None | ERR3283025 | HR-TB | None | ERR3797047 | HR-TB | lineage4 | None | ERR3283024 | Other | None | ERR3283027 | HR-TB | None | ERR3439432 | Other | None | ERR3797017 | Other | None | ERR3797036 | HR-TB | None | ERR3283032 | HR-TB | None | ERR3283036 | HR-TB | None | ERR3797014 | Other | None | ERR3797044 | Other | None | ERR3797061 | Other | None | ERR4810741 | HR-TB | None | ERR3797069 | Other | None | ERR403298 | HR-TB | lineage4 | None | ERR4769521 | HR-TB | None | ERR3797086 | Other | lineage4.9 | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4797201 | Other | lineage1.2.2.2 | None | ERR4798406 | HR-TB | None | ERR4800341 | Other | lineage3 | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR5336148 | Other | None | ERR4811022 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR4811105 | HR-TB | None | ERR4811493 | HR-TB | None | ERR736874 | HR-TB | None | ERR6358991 | HR-TB | None | ERR702404 | HR-TB | None | ERR702406 | HR-TB | None | ERR6866807 | HR-TB | lineage4 | None | ERR736835 | HR-TB | None | ERR736865 | HR-TB | None | ERR736867 | HR-TB | None | ERR176549 | Other | lineage4.3.4.2.1 | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR9117709 | HR-TB | None | ERR9786604 | Other | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9786671 | Other | None | ERR9786645 | Other | lineage4.6.2.2 | None | SRR1172728 | MDR-TB | None | ERR9786843 | Other | None | SRR1172234 | Other | None | SRR1169194 | Other | None | SRR1172310 | HR-TB | None | SRR1172857 | MDR-TB | None | SRR1172817 | HR-TB | None | SRR1173118 | Other | None | SRR1172951 | Other | None | SRR1173153 | HR-TB | None | SRR1173218 | Pre-XDR-TB | lineage4.3.3 | None | SRR1173562 | HR-TB | lineage4 | None | SRR1173363 | HR-TB | None | SRR1173400 | Other | None | SRR1173484 | Other | lineage4 | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173629 | Other | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1173788 | Other | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1173706 | Other | lineage4.9 | None | SRR1173778 | Other | None | SRR1175049 | RR-TB | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR1184294 | HR-TB | None | SRR12142341 | HR-TB | None | SRR1184388 | Other | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1196566 | HR-TB | None | SRR1184372 | MDR-TB | None | SRR1184381 | MDR-TB | None | SRR1184380 | HR-TB | None | SRR1196494 | MDR-TB | None | SRR1196546 | HR-TB | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | SRR1196768 | MDR-TB | None | SRR15368973 | Other | None | SRR12416824 | HR-TB | None | ERR176793 | Other | lineage4.1.1 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR19303884 | HR-TB | None | SRR25827418 | Pre-XDR-TB | lineage9;lineage3.1 | None | SRR25827507 | MDR-TB | lineage4.1.1.1 | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | ERR4815604 | HR-TB | None | SRR1710057 | Other | lineage2.1 | None | SRR19304036 | HR-TB | None | SRR20969677 | HR-TB | lineage2 | None | SRR23961558 | Other | lineage6.3;lineage4.9;lineage2.1 | None | SRR3675221 | HR-TB | None | SRR3675465 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | SRR3416776 | Other | lineage2.1 | None | ERR158583 | HR-TB | None | ERR4814331 | Sensitive | lineage4.9 | None | ERR161034 | Other | lineage4.3.4.2.1 | None |
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