Rv0006 - c.1938C>T


Drug resistance types
3 Sensitive 3 RR-TB 26 HR-TB 11 MDR-TB 5 Pre-XDR-TB 3 XDR-TB 89 Other
lineage Counts
lineage Count
lineage4.2;lineage4.9 1
lineage4.9;lineage6.3 4
lineage4.1.2.1 6
11
lineage1.1.1.1 1
lineage4.9 26
lineage4.3.3 2
La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 1
lineage2.1;lineage4.9;lineage6.3 5
La3;lineage2.1;lineage6.3 1
lineage3 3
La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 2
lineage2.1 5
lineage2.1;lineage4.9 7
lineage2.2.1 10
La3;lineage4.9 2
La3;lineage1.1.2 1
lineage2.2.1;lineage3 1
lineage2.2.1;lineage6.3 1
M.canetti;lineage2.2.2;lineage6.2 2
La3;lineage2.2.2 2
lineage4.1.1.1 1
La3 2
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 1
La3;lineage2.1;lineage4.9 2
lineage4.8 3
M.canetti;lineage2.1;lineage6.3 1
lineage3.1 1
La3;lineage2.1;lineage4.9;lineage6.3 4
lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 1
lineage4.2;lineage4.8.1;lineage4.9 2
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
M.canetti;lineage2.2 2
lineage2.2.1.1 3
lineage6.1.3 1
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
lineage4.3.4 1
lineage4 2
La3;lineage2.2.1 1
lineage2.2.2;lineage4 1
M.canetti;lineage2.1;lineage4.9 2
lineage4.3.4.1 1
La3;lineage4.8 2
lineage2.2 1
lineage4.6.2.2 1
lineage4.3.4.2.1 2
La3;lineage2 1
La3;M.canetti;lineage2.2.1 1
lineage4.2.2.2 1
M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 1
lineage4.1.1.3 1
spoligotype Counts
spoligotype Count
None 140
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR6046295 HR-TB lineage4.2;lineage4.9 None
SRR28119756 Other lineage4.9;lineage6.3 None
ERR9786421 Other lineage4.1.2.1 None
SRR1184372 MDR-TB None
SRR5065498 HR-TB lineage1.1.1.1 vn
SRR6046878 Other lineage4.9 None
SRR21732980 Other lineage4.3.3 None
ERR4407463 HR-TB None
ERR9786694 Other lineage4.1.2.1 None
ERR1034652 Other La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 None
SRR1172951 Other lineage4.9 None
SRR1196768 MDR-TB None
SRR3675508 Other lineage2.1;lineage4.9;lineage6.3 None
ERR4810741 HR-TB La3;lineage2.1;lineage6.3 None
SRR6964595 Other lineage3 None
SRR6046460 MDR-TB La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 None
SRR1710057 Other lineage2.1 None
ERR4811075 Other lineage2.1;lineage4.9;lineage6.3 None
SRR1184388 Other lineage2.1;lineage4.9 None
SRR18003019 Other lineage2.2.1 None
SRR26399973 Other La3;lineage4.9 None
ERR9117721 HR-TB La3;lineage1.1.2 None
SRR6046046 Other lineage4.9 None
SRR6044790 Other lineage2.1;lineage4.9 None
SRR1184312 Other lineage2.2.1 None
SRR25827497 XDR-TB lineage2.2.1;lineage3 None
SRR6045347 Other lineage4.9 None
SRR28119811 Other lineage2.2.1;lineage6.3 None
ERR4769450 Other lineage4.9 None
ERR1873492 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
ERR13245558 MDR-TB La3;lineage2.2.2 None
SRR1184380 Other lineage2.1;lineage4.9 None
ERR176793 Other lineage4.1.1.1 None
SRR1172728 RR-TB La3 None
SRR1196571 Pre-XDR-TB lineage4.3.3 None
ERR1334034 Other lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 None
SRR5341302 Other La3;lineage2.1;lineage4.9 None
ERR2229542 Other lineage4.8 None
ERR502532 Other M.canetti;lineage2.1;lineage6.3 None
ERR4769452 Other lineage4.9 None
ERR4798493 MDR-TB lineage2.2.1 None
SRR1184346 HR-TB lineage3.1 None
SRR3675517 Other La3;lineage2.1;lineage4.9;lineage6.3 None
ERR6358991 HR-TB lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 None
SRR6045785 MDR-TB lineage4.2;lineage4.8.1;lineage4.9 None
SRR29016780 Other lineage4.9 None
ERR502912 Other lineage2.2.1 None
SRR12416824 HR-TB lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
ERR9786601 Other lineage4.1.2.1 None
SRR12142341 HR-TB lineage2.1 None
ERR736875 HR-TB lineage4.9 None
SRR6046397 Other M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
ERR9786604 Other None
SRR1165667 Other lineage4.9;lineage6.3 None
ERR4831545 XDR-TB M.canetti;lineage2.2 None
SRR1196566 Other lineage4.9 None
SRR23961558 Other lineage2.1;lineage4.9;lineage6.3 None
SRR26399222 HR-TB lineage2.2.1.1 None
ERR9787165 Other lineage6.1.3 None
SRR1173778 Other lineage4.9 None
SRR3742665 HR-TB M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
ERR2514327 HR-TB lineage4.8 None
ERR736817 HR-TB lineage4.3.4 None
ERR736871 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR736874 Other La3;lineage2.1;lineage4.9 None
SRR1173629 Other lineage2.1;lineage4.9 None
ERR9786682 Other lineage4.1.2.1 None
SRR1169194 Other lineage4.9 None
SRR6046362 MDR-TB La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 None
SRR6045053 Other lineage4 None
SRR5341332 Pre-XDR-TB lineage3 None
SRR6045548 Sensitive lineage4.9 None
SRR1196494 MDR-TB None
SRR29093099 MDR-TB La3;lineage2.2.2 None
ERR1035157 Other lineage4.9 None
SRR3675216 Other lineage2.1;lineage4.9 None
ERR2027263 Other lineage4 None
SRR26159043 Other lineage4.9 None
SRR6789626 Other None
SRR29055629 MDR-TB La3;lineage2.2.1 None
SRR28119753 Other lineage4.9 None
SRR29093105 Other lineage2.2.2;lineage4 None
SRR1196546 Other lineage4.9 None
SRR6458423 HR-TB lineage2.2.1 None
SRR29017461 Other La3;lineage4.9 None
SRR1165699 Other lineage4.9 None
SRR28119777 Other lineage4.9 None
ERR736859 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR1180172 Other lineage2.2.1 None
ERR11466499 Other lineage4.3.4.1 None
ERR12015083 Other La3;lineage4.8 None
ERR4797054 Pre-XDR-TB lineage2.1 None
ERR323043 Other lineage2.1;lineage4.9 None
ERR4799513 HR-TB lineage2.2 None
ERR9786645 Other lineage4.6.2.2 None
SRR1180147 Other lineage2.2.1.1 None
SRR1183144 Other lineage2.2.1 None
SRR1183106 RR-TB lineage2.2.1.1 None
SRR1180270 Other lineage2.2.1 None
ERR3804155 Other lineage4.1.2.1 None
SRR25827682 Other None
SRR8552928 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR176549 Other lineage4.3.4.2.1 None
ERR7911670 XDR-TB M.canetti;lineage2.2 None
SRR5341333 Other lineage2.1;lineage4.9 None
ERR502524 HR-TB lineage4.9;lineage6.3 None
SRR19304036 Other La3;lineage2.1;lineage4.9;lineage6.3 None
ERR9786569 Other lineage4.8 None
SRR1196583 Other lineage4.9 None
SRR1173562 Sensitive lineage4.9 None
ERR4817893 Other La3;lineage4.8 None
SRR28119717 Other lineage4.9;lineage6.3 None
SRR20969677 HR-TB La3;lineage2 None
SRR3742657 Pre-XDR-TB La3;M.canetti;lineage2.2.1 None
ERR4831546 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
ERR4811022 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3416776 Other lineage2.1 None
ERR4811142 RR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
ERR11466146 Other lineage4.3.4.2.1 None
ERR11138607 Pre-XDR-TB lineage2.2.1 None
ERR4811105 HR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
SRR6046593 Other lineage4.9 None
SRR26399490 Sensitive lineage4.9 None
ERR2513470 Other lineage4.2.2.2 None
ERR294266 HR-TB lineage4.2;lineage4.8.1;lineage4.9 None
SRR29093909 Other lineage4.9 None
ERR4800341 Other lineage3 None
ERR702406 Other lineage2.1 None
SRR1172817 Other La3 None
SRR1173400 Other lineage4.9 None
SRR1184294 Other lineage4.9 None
ERR9786642 Other lineage4.1.2.1 None
SRR1184381 MDR-TB None
SRR1173118 Other lineage2.2.1 None
SRR1172857 Other None
ERR9787197 Other None
SRR28119805 Other lineage4.9 None
ERR6359045 Other M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 None
ERR11465024 Other lineage4.1.1.3 None
ERR9786671 Other None