Rv0006 - c.1938C>T


Drug resistance types
3 Sensitive 3 RR-TB 26 HR-TB 9 MDR-TB 5 Pre-XDR-TB 3 XDR-TB 86 Other
lineage Counts
lineage Count
lineage2.2.1 9
lineage4.1.2.1 6
10
lineage4.9;lineage6.3 4
lineage4.9 24
lineage1.1.1.1 1
La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 1
La3;lineage2.1;lineage4.9;lineage6.3 4
lineage4.8 3
lineage2.1;lineage4.9;lineage6.3 5
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
La3;lineage4.8 2
lineage4.3.4 1
La3;lineage2 1
La3;M.canetti;lineage2.2.1 1
La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 2
lineage2.1;lineage4.9 7
La3;lineage2.2.2 1
lineage4.3.4.2.1 2
M.canetti;lineage2.2.2;lineage6.2 2
lineage3 3
M.canetti;lineage2.1;lineage4.9 2
lineage2.1 5
La3 2
La3;lineage4.9 2
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 1
La3;lineage2.1;lineage4.9 2
M.canetti;lineage2.1;lineage6.3 1
lineage4.6.2.2 1
lineage2.2.1.1 3
M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 1
M.canetti;lineage2.2 2
lineage4 2
lineage2.2.1;lineage3 1
lineage4.2;lineage4.8.1;lineage4.9 2
lineage4.3.4.1 1
lineage4.3.3 2
lineage2.2 1
lineage3.1 1
lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 1
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
lineage4.1.1.3 1
lineage2.2.2;lineage4 1
lineage4.2;lineage4.9 1
M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
lineage6.1.3 1
La3;lineage2.1;lineage6.3 1
La3;lineage2.2.1 1
La3;lineage1.1.2 1
lineage2.2.1;lineage6.3 1
lineage4.2.2.2 1
lineage4.1.1.1 1
spoligotype Counts
spoligotype Count
None 135
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR502912 Other lineage2.2.1 None
ERR3804155 Other lineage4.1.2.1 None
SRR1184381 MDR-TB None
SRR28119756 Other lineage4.9;lineage6.3 None
ERR736875 HR-TB lineage4.9 None
SRR5065498 HR-TB lineage1.1.1.1 vn
SRR6046878 Other lineage4.9 None
SRR1196566 Other lineage4.9 None
ERR9786694 Other lineage4.1.2.1 None
ERR1034652 Other La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 None
SRR19304036 Other La3;lineage2.1;lineage4.9;lineage6.3 None
ERR9786569 Other lineage4.8 None
SRR3675508 Other lineage2.1;lineage4.9;lineage6.3 None
SRR29016780 Other lineage4.9 None
SRR1173562 Sensitive lineage4.9 None
SRR3742665 HR-TB M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
ERR4817893 Other La3;lineage4.8 None
SRR28119717 Other lineage4.9;lineage6.3 None
ERR736817 HR-TB lineage4.3.4 None
SRR20969677 HR-TB La3;lineage2 None
SRR3742657 Pre-XDR-TB La3;M.canetti;lineage2.2.1 None
SRR18003019 Other lineage2.2.1 None
SRR1169194 Other lineage4.9 None
SRR6046362 MDR-TB La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 None
SRR6044790 Other lineage2.1;lineage4.9 None
ERR13245558 MDR-TB La3;lineage2.2.2 None
ERR11466146 Other lineage4.3.4.2.1 None
SRR3675216 Other lineage2.1;lineage4.9 None
SRR6046593 Other lineage4.9 None
SRR26159043 Other lineage4.9 None
SRR6789626 Other None
ERR1873492 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
SRR1184380 Other lineage2.1;lineage4.9 None
ERR4800341 Other lineage3 None
ERR736859 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR702406 Other lineage2.1 None
SRR1172817 Other La3 None
SRR1173400 Other lineage4.9 None
SRR1180172 Other lineage2.2.1 None
SRR29017461 Other La3;lineage4.9 None
ERR1334034 Other lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 None
SRR5341302 Other La3;lineage2.1;lineage4.9 None
ERR502532 Other M.canetti;lineage2.1;lineage6.3 None
ERR4798493 MDR-TB lineage2.2.1 None
SRR3675517 Other La3;lineage2.1;lineage4.9;lineage6.3 None
ERR9786645 Other lineage4.6.2.2 None
SRR1180147 Other lineage2.2.1.1 None
SRR1183144 Other lineage2.2.1 None
SRR1184294 Other lineage4.9 None
SRR1183106 RR-TB lineage2.2.1.1 None
ERR9786642 Other lineage4.1.2.1 None
SRR1173118 Other lineage2.2.1 None
ERR9787197 Other None
SRR28119805 Other lineage4.9 None
ERR6359045 Other M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 None
SRR8552928 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR9786601 Other lineage4.1.2.1 None
ERR9786671 Other None
SRR12142341 HR-TB lineage2.1 None
ERR176549 Other lineage4.3.4.2.1 None
ERR9786421 Other lineage4.1.2.1 None
SRR1184372 MDR-TB None
ERR9786604 Other None
SRR1165667 Other lineage4.9;lineage6.3 None
SRR5341333 Other lineage2.1;lineage4.9 None
ERR4831545 XDR-TB M.canetti;lineage2.2 None
ERR502524 HR-TB lineage4.9;lineage6.3 None
SRR23961558 Other lineage2.1;lineage4.9;lineage6.3 None
SRR26399222 HR-TB lineage2.2.1.1 None
SRR1173778 Other lineage4.9 None
SRR1196583 Other lineage4.9 None
ERR736871 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR4811075 Other lineage2.1;lineage4.9;lineage6.3 None
ERR736874 Other La3;lineage2.1;lineage4.9 None
SRR1173629 Other lineage2.1;lineage4.9 None
SRR26399973 Other La3;lineage4.9 None
SRR6045053 Other lineage4 None
SRR5341332 Pre-XDR-TB lineage3 None
SRR25827497 XDR-TB lineage2.2.1;lineage3 None
SRR6045347 Other lineage4.9 None
SRR26399490 Sensitive lineage4.9 None
ERR294266 HR-TB lineage4.2;lineage4.8.1;lineage4.9 None
SRR1165699 Other lineage4.9 None
ERR11466499 Other lineage4.3.4.1 None
SRR1196571 Pre-XDR-TB lineage4.3.3 None
ERR4797054 Pre-XDR-TB lineage2.1 None
ERR2229542 Other lineage4.8 None
ERR4799513 HR-TB lineage2.2 None
SRR1184346 HR-TB lineage3.1 None
ERR6358991 HR-TB lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 None
SRR6045785 MDR-TB lineage4.2;lineage4.8.1;lineage4.9 None
SRR12416824 HR-TB lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
SRR25827682 Other None
SRR1172857 Other None
ERR11465024 Other lineage4.1.1.3 None
SRR29093105 Other lineage2.2.2;lineage4 None
SRR6046295 HR-TB lineage4.2;lineage4.9 None
ERR7911670 XDR-TB M.canetti;lineage2.2 None
SRR6046397 Other M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
SRR21732980 Other lineage4.3.3 None
ERR4407463 HR-TB None
ERR9787165 Other lineage6.1.3 None
SRR1172951 Other lineage4.9 None
SRR1196768 MDR-TB None
ERR4810741 HR-TB La3;lineage2.1;lineage6.3 None
SRR6964595 Other lineage3 None
ERR2514327 HR-TB lineage4.8 None
SRR6046460 MDR-TB La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 None
SRR1710057 Other lineage2.1 None
SRR29055629 MDR-TB La3;lineage2.2.1 None
ERR4831546 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
SRR1184388 Other lineage2.1;lineage4.9 None
ERR4811022 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR9786682 Other lineage4.1.2.1 None
SRR3416776 Other lineage2.1 None
ERR9117721 HR-TB La3;lineage1.1.2 None
ERR4811142 RR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
SRR6046046 Other lineage4.9 None
SRR6045548 Sensitive lineage4.9 None
SRR1184312 Other lineage2.2.1 None
ERR11138607 Pre-XDR-TB lineage2.2.1 None
ERR4811105 HR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
ERR1035157 Other lineage4.9 None
ERR2027263 Other lineage4 None
SRR28119811 Other lineage2.2.1;lineage6.3 None
ERR2513470 Other lineage4.2.2.2 None
ERR4769450 Other lineage4.9 None
SRR1196546 Other lineage4.9 None
SRR6458423 HR-TB lineage2.2.1 None
ERR176793 Other lineage4.1.1.1 None
SRR1172728 RR-TB La3 None
SRR28119777 Other lineage4.9 None
ERR12015083 Other La3;lineage4.8 None
ERR323043 Other lineage2.1;lineage4.9 None
ERR4769452 Other lineage4.9 None