Rv0005 - c.1026C>T
Drug resistance types
32 Sensitive
0 RR-TB
68 HR-TB
5 MDR-TB
5 Pre-XDR-TB
0 XDR-TB
51 Other
lineage Counts
| lineage | Count |
|---|---|
| 64 | |
| lineage2.2.1 | 5 |
| lineage4 | 27 |
| lineage3 | 4 |
| lineage3.1.2 | 1 |
| lineage2.2 | 5 |
| lineage4.1.3 | 2 |
| lineage1.1.2 | 1 |
| lineage4.1.2.1 | 7 |
| lineage1.1.3.1 | 1 |
| lineage4.3.2 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage4.8 | 1 |
| lineage4.6.2.2 | 1 |
| lineage6 | 1 |
| lineage3.1.2.2;lineage3.1.2.1 | 1 |
| lineage4.9 | 16 |
| lineage1.2.1.2 | 1 |
| lineage4.2.1 | 2 |
| lineage4.5 | 1 |
| La1.8.1 | 3 |
| lineage7;lineage2.2.1.2 | 1 |
| lineage9;lineage3.1 | 1 |
| lineage4;lineage2.2 | 1 |
| lineage4.9;lineage4.6.3 | 1 |
| lineage4.9;lineage4.8.1;lineage4.1.1 | 1 |
| lineage1.2.1.1 | 1 |
| lineage2.1 | 1 |
| lineage3.1.3 | 1 |
| lineage4.1.1.2 | 1 |
| lineage4.7 | 2 |
| lineage5.2 | 1 |
| La2 | 1 |
| lineage4.1.2 | 1 |
| lineage4;lineage3.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 161 |
Geographic prevalence
Country level data for this variant is available for 2 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4188247 | HR-TB | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4796929 | Sensitive | lineage4 | None | ERR4797184 | Sensitive | lineage4 | None | ERR4797474 | Other | None | ERR4798504 | Other | lineage3 | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4800341 | Other | lineage3 | None | ERR6358979 | Other | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR4811493 | HR-TB | None | ERR736867 | HR-TB | None | ERR6866410 | Sensitive | None | ERR6866547 | Sensitive | lineage4 | None | ERR702406 | HR-TB | None | ERR736848 | HR-TB | None | ERR736856 | HR-TB | lineage4 | None | ERR736865 | HR-TB | None | ERR7821163 | Other | lineage2.2.1 | None | ERR736872 | Sensitive | lineage4 | None | ERR751326 | Sensitive | lineage4 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR9117709 | HR-TB | None | ERR9117805 | Other | lineage4.3.2 | None | ERR9285862 | Sensitive | lineage4.3.4.2.1 | None | ERR9786569 | Other | lineage4.8 | None | ERR9786604 | Other | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9787165 | Other | lineage6 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | ERR9787197 | Other | None | ERR987722 | HR-TB | None | SRR14801749 | Sensitive | None | SRR12416824 | HR-TB | None | SRR10808805 | Sensitive | None | SRR1172146 | Sensitive | lineage4.9 | None | SRR1172310 | HR-TB | None | SRR1174897 | HR-TB | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR12006550 | Other | lineage1.2.1.2 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | SRR19303884 | HR-TB | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR1791747 | Other | La1.8.1 | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR8692905 | HR-TB | None | SRR25827418 | Pre-XDR-TB | lineage9;lineage3.1 | None | SRR8692863 | Other | lineage4;lineage2.2 | None | SRR8692825 | Other | lineage4.9 | None | SRR8692887 | Other | None | SRR8692888 | Other | lineage4.9 | None | SRR3675465 | HR-TB | None | SRR26159047 | Other | lineage4.9;lineage4.6.3 | None | ERR4815604 | HR-TB | None | ERR779852 | Sensitive | lineage4.9;lineage4.8.1;lineage4.1.1 | None | SRR3675221 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | ERR4814734 | Other | lineage1.2.1.1 | None | SRR3675311 | Other | None | SRR3675236 | HR-TB | None | ERR176740 | HR-TB | None | SRR3675312 | HR-TB | lineage4 | None | SRR5341422 | HR-TB | lineage2.1 | None | SRR3675510 | Other | None | ERR4816999 | Other | None | SRR3675572 | Other | None | ERR4816466 | HR-TB | None | ERR2229163 | Sensitive | lineage4 | None | SRR5341432 | HR-TB | lineage4 | None | ERR2513121 | Sensitive | lineage3.1.3 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR4818929 | HR-TB | None | ERR4818607 | Sensitive | lineage4.9 | None | ERR4818615 | Other | None | SRR5341373 | HR-TB | lineage4 | None | SRR5341400 | HR-TB | lineage4 | None | ERR4816585 | Other | lineage2.2 | None | ERR4816656 | HR-TB | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR4818021 | Other | La1.8.1 | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR4819932 | Other | lineage4.7 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR5341293 | HR-TB | lineage4 | None | SRR5341313 | HR-TB | None | SRR5341333 | HR-TB | None | SRR5341315 | Sensitive | None | SRR5341332 | Pre-XDR-TB | lineage3 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR2706950 | MDR-TB | lineage5.2 | cd | SRR5341330 | HR-TB | None | ERR4821872 | Sensitive | lineage4.9 | None | SRR5341470 | HR-TB | None | SRR6046066 | HR-TB | None | ERR2693227 | Other | lineage4.9 | None | SRR6044835 | Sensitive | lineage4 | None | SRR6045892 | Sensitive | None | SRR6044855 | Other | lineage4.9 | None | SRR6044875 | HR-TB | lineage4.9 | None | SRR6045010 | Other | lineage4 | None | ERR4831117 | HR-TB | None | SRR6046253 | HR-TB | lineage4.9 | None | SRR6046305 | Other | lineage4.9 | None | SRR6046362 | HR-TB | None | SRR6046460 | HR-TB | None | SRR6511621 | HR-TB | None | SRR6046540 | HR-TB | None | ERR2510568 | Pre-XDR-TB | lineage3 | pk | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | ERR4831546 | HR-TB | lineage2.2 | None | SRR6831881 | Sensitive | lineage4.1.2.1 | None | SRR6785262 | Sensitive | lineage4.2.1 | None | ERR502524 | HR-TB | La2 | None | ERR502510 | Sensitive | lineage4 | None | SRR7496509 | Other | None | ERR502532 | HR-TB | None | SRR7496517 | Other | None | ERR323053 | HR-TB | None | ERR323039 | HR-TB | None | ERR323043 | HR-TB | None | SRR7496523 | Other | lineage4.7 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | ERR1035157 | Other | lineage4.9 | None | ERR067699 | HR-TB | lineage4 | None | ERR1034652 | Other | None | ERR323115 | Sensitive | lineage4 | None | ERR323108 | HR-TB | lineage4 | None | ERR323107 | Other | lineage4 | None | ERR3283036 | HR-TB | None | ERR133825 | Sensitive | lineage4 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3283014 | HR-TB | None | ERR3283028 | Other | None | ERR3283027 | HR-TB | None | ERR3283031 | HR-TB | None | ERR108471 | HR-TB | lineage4 | None | ERR3283051 | Other | lineage4.9 | None | ERR3283047 | HR-TB | None | ERR5336148 | Other | None | ERR3283057 | HR-TB | lineage4 | None | ERR3797058 | Other | lineage4.9 | None | ERR3797048 | HR-TB | None | ERR3797067 | Other | La1.8.1 | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797087 | Sensitive | lineage4 | None | ERR3797063 | HR-TB | None | ERR3797069 | Other | None | ERR3797079 | Sensitive | lineage4 | None | ERR3797064 | Sensitive | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR405209 | Sensitive | lineage4 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None |
|---|
