Rv2043c - p.Ala146Thr
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
0 Sensitive
2 RR-TB
4 HR-TB
86 MDR-TB
44 Pre-XDR-TB
4 XDR-TB
5 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.3.2.1 | 11 |
| lineage2.2.1 | 60 |
| lineage4.8 | 16 |
| lineage4.3.3 | 4 |
| lineage2.2.1.1;lineage3 | 1 |
| lineage4.2.1 | 8 |
| lineage4.1.2.1;lineage4.2.1 | 2 |
| lineage4.4.1.1 | 1 |
| lineage1.1.2 | 4 |
| lineage4.3.4.2.1 | 5 |
| lineage4 | 2 |
| lineage3.1.3 | 2 |
| lineage4.1.2.1 | 4 |
| lineage4.3 | 2 |
| lineage2.2.1.1 | 5 |
| lineage4.9 | 1 |
| lineage4.4 | 3 |
| lineage4.2.1.1 | 2 |
| lineage4.6.4 | 2 |
| lineage4.5 | 1 |
| lineage3 | 2 |
| lineage4.1 | 1 |
| lineage1.2.1.2.1 | 1 |
| lineage2.2.2 | 3 |
| lineage2.2.1;lineage4.2.1 | 1 |
| lineage1.2.2.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 145 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR9993039 | Pre-XDR-TB | lineage4.3.2.1 | None | ERR8773984 | MDR-TB | lineage2.2.1 | None | SRR6831884 | MDR-TB | lineage2.2.1 | None | ERR9992636 | Pre-XDR-TB | lineage4.3.2.1 | None | SRR10525359 | MDR-TB | lineage4.8 | None | SRR28240161 | MDR-TB | lineage2.2.1 | None | ERR4423503 | Other | lineage4.3.2.1 | None | SRR29273664 | MDR-TB | lineage4.8 | None | SRR29273621 | MDR-TB | lineage4.8 | None | SRR3725658 | Other | lineage4.3.2.1 | None | SRR29539320 | MDR-TB | lineage2.2.1 | None | SRR6484941 | Pre-XDR-TB | lineage2.2.1 | None | SRR6832625 | MDR-TB | lineage4.3.3 | None | ERR6052083 | HR-TB | lineage4.3.2.1 | None | SRR25827693 | MDR-TB | lineage2.2.1.1;lineage3 | None | SRR14801358 | Pre-XDR-TB | lineage4.2.1 | None | SRR25206874 | MDR-TB | lineage2.2.1 | None | SRR29273937 | MDR-TB | lineage4.8 | None | SRR6356993 | Pre-XDR-TB | lineage4.1.2.1;lineage4.2.1 | None | ERR10680185 | MDR-TB | lineage4.4.1.1 | None | SRR18054783 | Pre-XDR-TB | lineage2.2.1 | None | ERR4553925 | MDR-TB | lineage1.1.2 | None | ERR4828053 | MDR-TB | lineage2.2.1 | None | ERR8774184 | Other | lineage4.3.2.1 | None | SRR18715111 | Pre-XDR-TB | lineage4.8 | None | ERR2707190 | MDR-TB | lineage4.3.4.2.1 | cd | ERR2706941 | RR-TB | lineage4 | cd | ERR4830747 | MDR-TB | lineage3.1.3 | ir | ERR4828788 | XDR-TB | lineage4.1.2.1 | None | ERR4828818 | MDR-TB | lineage4.8 | None | ERR9806937 | Pre-XDR-TB | lineage2.2.1 | None | SRR14801775 | Pre-XDR-TB | lineage4.2.1 | None | ERR400517 | Pre-XDR-TB | lineage2.2.1 | gb | ERR1193763 | MDR-TB | lineage4.3 | np | ERR1465929 | MDR-TB | lineage4.8 | do | SRR7829582 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR13276111 | HR-TB | lineage2.2.1 | None | ERR6052033 | HR-TB | lineage4.3.2.1 | None | SRR10306026 | MDR-TB | lineage2.2.1 | None | SRR22251250 | MDR-TB | lineage2.2.1.1 | None | SRR26159056 | MDR-TB | lineage4.9 | None | ERR4800613 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR5866581 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865556 | MDR-TB | lineage2.2.1 | None | SRR7592359 | Pre-XDR-TB | lineage4.8 | None | SRR13232632 | MDR-TB | lineage2.2.1 | None | SRR28706622 | MDR-TB | lineage2.2.1 | None | SRR1183118 | MDR-TB | lineage4.4 | None | ERR11082156 | MDR-TB | lineage4.2.1.1 | None | ERR13266904 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR14801304 | MDR-TB | lineage2.2.1 | None | SRR29273836 | MDR-TB | lineage4.8 | None | SRR29274192 | MDR-TB | lineage4.8 | None | ERR4872055 | MDR-TB | lineage4.6.4 | None | SRR29017710 | Pre-XDR-TB | lineage1.1.2 | None | SRR24710056 | Pre-XDR-TB | lineage2.2.1 | None | SRR29538875 | MDR-TB | lineage2.2.1 | None | SRR10040439 | Pre-XDR-TB | lineage4.5 | None | ERR13260057 | MDR-TB | lineage2.2.1 | None | ERR13284731 | MDR-TB | lineage2.2.1 | None | SRR25827577 | MDR-TB | lineage2.2.1.1 | None | SRR5341332 | Pre-XDR-TB | lineage3 | None | SRR29273867 | MDR-TB | lineage4.8 | None | SRR29231803 | MDR-TB | lineage4.3.4.2.1 | None | SRR29539673 | MDR-TB | lineage2.2.1 | None | SRR29539543 | MDR-TB | lineage4.1 | None | ERR4797967 | MDR-TB | lineage2.2.1 | in | SRR5486888 | Pre-XDR-TB | lineage4.8 | None | SRR7781508 | XDR-TB | lineage4.1.2.1 | None | ERR6336786 | MDR-TB | lineage1.2.1.2.1 | None | SRR18715492 | MDR-TB | lineage2.2.1 | None | ERR4830025 | Pre-XDR-TB | lineage2.2.1 | None | SRR29231776 | RR-TB | lineage4 | None | ERR11798691 | Pre-XDR-TB | lineage4.2.1 | None | ERR13245252 | Pre-XDR-TB | lineage2.2.2 | None | ERR11043985 | MDR-TB | lineage4.3 | None | SRR671737 | MDR-TB | lineage2.2.1 | cn | SRR25206899 | MDR-TB | lineage2.2.1 | None | ERR11775019 | MDR-TB | lineage4.3.2.1 | None | SRR28434979 | XDR-TB | lineage2.2.1 | None | ERR4811605 | MDR-TB | lineage2.2.1 | cn | SRR7657748 | MDR-TB | lineage2.2.1;lineage4.2.1 | None | SRR24710252 | Pre-XDR-TB | lineage2.2.1 | None | SRR6824317 | MDR-TB | lineage2.2.1 | cn | ERR13276334 | MDR-TB | lineage4.2.1.1 | None | SRR23311041 | Pre-XDR-TB | lineage4.2.1 | None | ERR8774435 | MDR-TB | lineage4.3.4.2.1 | None | ERR9119465 | MDR-TB | lineage4.6.4 | None | ERR3794472 | MDR-TB | lineage2.2.1 | None | SRR10147700 | MDR-TB | lineage3.1.3 | None | ERR4423504 | Other | lineage4.3.2.1 | None | ERR2510729 | Pre-XDR-TB | lineage4.1.2.1 | it | SRR25827849 | Pre-XDR-TB | lineage1.2.2.2 | None | ERR4830062 | MDR-TB | lineage2.2.1 | None | SRR16088203 | MDR-TB | lineage2.2.1 | None | SRR18714901 | Pre-XDR-TB | lineage4.3.3 | None | SRR3082106 | Pre-XDR-TB | lineage2.2.1 | None | SRR1723639 | MDR-TB | lineage2.2.1 | cn | SRR1723640 | MDR-TB | lineage2.2.1 | cn | SRR1723642 | MDR-TB | lineage2.2.1 | cn | SRR1723641 | MDR-TB | lineage2.2.1 | cn | ERR8774185 | Other | lineage4.3.2.1 | None | SRR6356970 | Pre-XDR-TB | lineage4.1.2.1;lineage4.2.1 | None | SRR12420790 | HR-TB | lineage2.2.1 | None | ERR13194083 | XDR-TB | lineage2.2.2 | None | ERR5866531 | MDR-TB | lineage2.2.1 | None | SRR28498633 | MDR-TB | lineage4.2.1 | None | SRR7645998 | Pre-XDR-TB | lineage4.2.1 | None | SRR1180218 | MDR-TB | lineage4.4 | None | ERR13244689 | MDR-TB | lineage2.2.1 | None | SRR29017506 | Pre-XDR-TB | lineage1.1.2 | None | SRR5341411 | Pre-XDR-TB | lineage3 | None | ERR11138655 | Pre-XDR-TB | lineage4.8 | None | SRR10379944 | MDR-TB | lineage4.2.1 | None | SRR29539625 | Pre-XDR-TB | lineage2.2.1 | None | SRR29273925 | MDR-TB | lineage4.8 | None | SRR9738494 | MDR-TB | lineage4.8 | None | ERR4798326 | MDR-TB | lineage2.2.1.1 | in | SRR10040328 | Pre-XDR-TB | lineage2.2.1 | None | ERR5866510 | MDR-TB | lineage4.3.3 | None | SRR29539173 | MDR-TB | lineage4.3.3 | None | SAMN02628529 | MDR-TB | lineage4.4 | ir | ERR4810539 | Pre-XDR-TB | lineage2.2.1 | cn | SRR11972401 | MDR-TB | lineage2.2.1 | None | SRR22757405 | MDR-TB | lineage2.2.1 | None | ERR7911707 | Pre-XDR-TB | lineage2.2.1 | za | ERR9992885 | Pre-XDR-TB | lineage4.3.2.1 | None | SRR6832072 | MDR-TB | lineage2.2.1 | None | ERR11082580 | MDR-TB | lineage4.8 | None | ERR2516474 | MDR-TB | lineage2.2.1 | nl | SRR6280209 | Pre-XDR-TB | lineage2.2.1 | cn | SRR6824648 | MDR-TB | lineage2.2.1 | cn | SRR6824655 | MDR-TB | lineage2.2.1 | cn | SRR6824653 | MDR-TB | lineage2.2.1 | cn | SRR6824536 | MDR-TB | lineage2.2.1 | cn | SRR6824533 | MDR-TB | lineage2.2.1 | cn | SRR6824567 | MDR-TB | lineage2.2.2 | cn | ERR11068063 | Pre-XDR-TB | lineage2.2.1 | None | SRR29017131 | Pre-XDR-TB | lineage1.1.2 | None | ERR5865555 | MDR-TB | lineage2.2.1 | None | DRR130091 | Pre-XDR-TB | lineage2.2.1 | None | SRR14801409 | MDR-TB | lineage4.2.1 | None | ERR13258455 | Pre-XDR-TB | lineage2.2.1 | None | SRR3724799 | MDR-TB | lineage4.3.4.2.1 | cd | ERR4423738 | MDR-TB | lineage4.3.4.2.1 | None |
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