Rv3596c - c.1374C>G


Drug resistance types
15 Sensitive 2 RR-TB 49 HR-TB 16 MDR-TB 4 Pre-XDR-TB 1 XDR-TB 151 Other
lineage Counts
lineage Count
lineage4.9 55
lineage4.3.4.1 1
lineage2.1 3
lineage4.1.3 2
lineage4.9;lineage6.3 8
La3;lineage4.8 2
La3;lineage4.9 3
lineage2.1;lineage4.9 14
lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 1
La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 1
La1.7;lineage4.2 1
La1.2 1
lineage1.1.1;lineage4 1
lineage4.1.2.1 11
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 4
La1.7;lineage4.9 2
20
lineage4.1.1.3 2
lineage2.2.1 11
La1.7;M.canetti;lineage4.9 1
lineage6.1.3 2
lineage2.1;lineage4.9;lineage6.3 10
La3;lineage2.1;lineage6.3 1
lineage4.5 1
lineage6.3.1 1
La3;lineage2.2.1 1
La1.7.X-unk4;lineage4.9 1
lineage4.7 1
lineage2.1;lineage6.3 2
La3;lineage1.1.2 1
lineage3 4
lineage2.2.2 1
lineage4.6.2.2 3
lineage1.2.2.2 2
M.canetti;lineage2.1;lineage4.9 2
La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 1
La3 2
La3;lineage2.1;lineage4.9 2
M.canetti;lineage2.1;lineage6.3 1
La3;lineage2.1;lineage4.9;lineage6.3 4
La1.7;lineage4.9;lineage7 3
lineage4.6.3;lineage4.9 1
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
lineage5.2 2
lineage4.1 1
lineage3.1.2.1;lineage4 1
M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 1
La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 2
lineage4.6.1.1 1
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 1
lineage4.2;lineage4.6.3;lineage4.9.1 1
La3;lineage2 1
lineage1.1.2 1
La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 1
La1.6;La3;lineage4.9 2
lineage2.2.1;lineage3 1
lineage4.1;lineage4.8 2
lineage2.2.1;lineage6.3 1
lineage4.1.1.1 3
La1.6;La3;M.canetti;lineage2.1;lineage4.9 1
La1;lineage4.9 1
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 1
lineage2.2.2;lineage4 1
lineage4.3.4.2.1 2
lineage4.1.2 1
lineage1;lineage4.9 1
lineage4.3.3 1
La1.2.BCG;La1.8.1 1
lineage4.8 1
lineage4.2.1.1;lineage4.3.3 1
La3;M.canetti;lineage2.2.1 1
lineage2.2.1;lineage4 1
La1.6;La3;lineage4.6.4;lineage4.9 1
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 1
lineage4.6.3;lineage4.9;lineage6.3 1
lineage4 3
lineage3.1.1 1
lineage2.1;lineage4.3.2;lineage4.9 1
La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 1
spoligotype Counts
spoligotype Count
None 238
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR4812155 Other lineage4.9 None
SRR13583478 HR-TB lineage4.3.4.1 None
ERR702406 Other lineage2.1 None
SRR3675247 Other lineage4.9 None
ERR9786611 HR-TB lineage4.1.3 None
SRR3675549 Other lineage4.9 None
ERR13265748 Other lineage4.9;lineage6.3 None
ERR12015083 Other La3;lineage4.8 None
SRR29017461 Other La3;lineage4.9 None
ERR323043 Other lineage2.1;lineage4.9 None
ERR6358991 HR-TB lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 None
SRR3675234 Other La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR23961559 Other La1.7;lineage4.2 None
SRR23961549 Other La1.2 None
SRR7496472 Other lineage4.9 None
SRR1184294 Other lineage4.9 None
ERR4831638 Sensitive lineage1.1.1;lineage4 None
ERR3804155 Other lineage4.1.2.1 None
ERR3797014 Other La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR3797070 Other lineage4.9 None
ERR176560 HR-TB La1.7;lineage4.9 None
SRR3675221 Other lineage4.9 None
ERR11252612 Other La3;lineage4.9 None
ERR212001 HR-TB None
SRR6789621 Other lineage4.9 None
ERR234659 Other None
SRR28119752 Other lineage4.9 None
ERR11465024 Other lineage4.1.1.3 None
ERR4819422 HR-TB lineage4.9 None
ERR4819781 Other lineage2.2.1 None
ERR736835 HR-TB La1.7;M.canetti;lineage4.9 None
SRR1165667 Other lineage4.9;lineage6.3 None
SRR6045380 Other lineage2.1;lineage4.9 None
ERR13265528 Other lineage4.9;lineage6.3 None
SRR1196566 Other lineage4.9 None
ERR9787165 Other lineage6.1.3 None
ERR4819241 Other lineage4.9 None
SRR1173778 Other lineage4.9 None
ERR4818929 HR-TB lineage4.9 None
SRR3675508 Other lineage2.1;lineage4.9;lineage6.3 None
ERR4810741 HR-TB La3;lineage2.1;lineage6.3 None
ERR4811030 Sensitive lineage4.9 None
ERR4811031 Sensitive lineage4.5 None
SRR18213713 HR-TB None
ERR9787139 Other lineage6.3.1 None
ERR736871 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR29055629 MDR-TB La3;lineage2.2.1 None
ERR4811075 Other lineage2.1;lineage4.9;lineage6.3 None
SRR3675214 Other lineage4.9 None
SRR3675520 Other La1.7.X-unk4;lineage4.9 None
ERR4817896 HR-TB lineage2.2.1 None
ERR4819932 Other lineage4.7 None
ERR2693245 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR19303884 Other lineage2.1;lineage6.3 None
ERR9786682 Other lineage4.1.2.1 None
ERR9117721 HR-TB La3;lineage1.1.2 None
ERR13267017 Pre-XDR-TB lineage2.2.1 None
SRR5341332 Pre-XDR-TB lineage3 None
SRR3675455 Sensitive lineage4.9 None
SRR15368973 Other lineage4.9 None
SRR18910194 HR-TB lineage2.2.2 None
SRR26159043 Other lineage4.9 None
ERR9119525 MDR-TB lineage4.6.2.2 None
SRR6458423 HR-TB lineage2.2.1 None
ERR400336 Sensitive lineage4.9 None
ERR4811311 Other lineage2.1;lineage4.9;lineage6.3 None
SRR7535086 Other None
ERR2693230 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR108471 HR-TB lineage4.9 None
ERR4797201 Other lineage1.2.2.2 None
ERR4800341 Other lineage3 None
ERR736859 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675229 Sensitive lineage4.9 None
ERR4816656 Other lineage4.9 None
ERR2026696 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 None
ERR5336148 Other lineage2.1;lineage6.3 None
SRR1172817 Other La3 None
SRR1172234 Other lineage4.9 None
SRR7496509 Other None
ERR736867 Other lineage2.1;lineage4.9 None
ERR702404 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR4797054 Pre-XDR-TB lineage2.1 None
SRR5341302 Other La3;lineage2.1;lineage4.9 None
ERR502532 Other M.canetti;lineage2.1;lineage6.3 None
SRR3675517 Other La3;lineage2.1;lineage4.9;lineage6.3 None
SRR5341422 HR-TB La1.7;lineage4.9;lineage7 None
SRR7131023 Other lineage4.1.2.1 None
SRR11662690 HR-TB lineage4.9 None
ERR11252558 Other lineage4.6.3;lineage4.9 None
SRR12416824 HR-TB lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
ERR9119500 MDR-TB lineage5.2 None
ERR9786642 Other lineage4.1.2.1 None
SRR1184381 MDR-TB None
SRR28044634 Other lineage3 None
ERR2514692 Other None
SRR25827682 Other None
SRR8552928 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR4797313 Sensitive lineage2.2.1 None
ERR9786671 Other None
SRR28119756 Other lineage4.9;lineage6.3 None
ERR212034 HR-TB La1.7;lineage4.9 None
SRR1184372 MDR-TB None
ERR9786440 Other lineage4.1 None
SRR5341333 Other lineage2.1;lineage4.9 None
SRR3675232 Other lineage4.1.2.1 None
SRR3675465 Other lineage4.9;lineage6.3 None
SRR28351455 Other lineage3.1.2.1;lineage4 None
SRR29050928 Other lineage4.9 None
SRR29096541 Other lineage4.9 None
ERR9786694 Other lineage4.1.2.1 None
SRR1196768 MDR-TB None
SRR19304036 Other La3;lineage2.1;lineage4.9;lineage6.3 None
ERR11252599 Other M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 None
SRR6046540 Other lineage2.1;lineage4.9 None
SRR3675275 Other lineage4.9 None
ERR2026698 HR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
ERR6358755 Other lineage4.6.1.1 None
SRR3742665 HR-TB M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
SRR28119717 Other lineage4.9;lineage6.3 None
ERR2693257 Other La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 None
ERR3283019 Other lineage2.1;lineage4.9 None
ERR3283026 HR-TB lineage4.2;lineage4.6.3;lineage4.9.1 None
SRR20969677 HR-TB La3;lineage2 None
ERR736874 Other La3;lineage2.1;lineage4.9 None
ERR400320 Sensitive lineage4.9 None
SRR1173629 Other lineage2.1;lineage4.9 None
SRR25827687 MDR-TB lineage1.1.2 None
ERR4811022 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR3797069 Other lineage4.9 None
ERR2026695 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 None
SRR5341432 Sensitive La1.7;lineage4.9;lineage7 None
ERR2026697 HR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
ERR3797061 Other La1.6;La3;lineage4.9 None
SRR3675467 Other lineage2.1;lineage4.9;lineage6.3 None
SRR6045526 Other lineage4.9 None
ERR4815604 Other None
SRR25827497 XDR-TB lineage2.2.1;lineage3 None
ERR9786526 Other lineage4.1;lineage4.8 None
SRR6789626 Other None
SRR28119811 Other lineage2.2.1;lineage6.3 None
ERR9786617 Other lineage4.1.1.1 None
ERR4797588 MDR-TB lineage3 None
ERR4872119 MDR-TB lineage4.6.2.2 None
ERR9786515 Other lineage4.1.2.1 None
ERR400326 Other lineage4.9 None
ERR3283020 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.9 None
SRR1196546 Other lineage4.9 None
SRR6046245 Other lineage4.9 None
ERR4820854 Other lineage4.1.2.1 None
ERR4815441 HR-TB lineage4.9 None
SRR20970043 MDR-TB lineage2.2.1 None
SRR3675524 Other lineage4.9;lineage6.3 None
SRR23961542 Other La1;lineage4.9 None
ERR4872094 MDR-TB lineage5.2 None
SRR3675387 Other lineage4.9 None
SRR28119777 Other lineage4.9 None
ERR9117709 Other None
SRR1173400 Other lineage4.9 None
SRR3675581 Other lineage2.1;lineage4.9 None
SRR12416840 MDR-TB lineage4.9 None
ERR9787153 Other lineage6.1.3 None
ERR1334034 Other lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 None
SRR11972367 Sensitive lineage2.2.1 None
ERR9786645 Other lineage4.6.2.2 None
SRR3675490 Other lineage2.1;lineage4.9;lineage6.3 None
SRR2010299 MDR-TB lineage2.2.1 None
ERR502912 Other lineage2.2.1 None
ERR9786843 Other None
ERR11252664 Other lineage2.2.1 None
SRR29093105 Other lineage2.2.2;lineage4 None
ERR9787197 Other None
SRR28119805 Other lineage4.9 None
ERR4814352 Other lineage2.2.1 None
ERR9786601 Other lineage4.1.2.1 None
SRR12142341 HR-TB lineage2.1 None
ERR176549 Other lineage4.3.4.2.1 None
ERR9786421 Other lineage4.1.2.1 None
ERR9786525 Other lineage4.1;lineage4.8 None
ERR9786604 Other None
SRR3675477 Sensitive lineage4.9 None
SRR3675457 Other lineage4.9 None
ERR4818347 Other lineage4.1.2 None
SRR25827507 MDR-TB lineage4.1.1.1 None
ERR4797350 Sensitive lineage1;lineage4.9 None
SRR29051093 Other lineage4.9 None
SRR6045242 Other lineage2.1;lineage4.9 None
SRR29051043 Other lineage4.3.3 None
ERR3283036 Other lineage2.1;lineage4.9 None
ERR4407463 HR-TB None
ERR3283027 Other lineage2.1;lineage4.9;lineage6.3 None
ERR4818021 Other La1.2.BCG;La1.8.1 None
ERR9786569 Other lineage4.8 None
SRR1196583 Other lineage4.9 None
SRR29016780 Other lineage4.9 None
SRR5341373 Other lineage4.9 None
ERR867542 HR-TB lineage4.2.1.1;lineage4.3.3 None
ERR4817893 Other La3;lineage4.8 None
ERR161034 HR-TB lineage4.3.4.2.1 None
SRR3742657 Pre-XDR-TB La3;M.canetti;lineage2.2.1 None
SRR1184388 Other lineage2.1;lineage4.9 None
SRR3675522 Other lineage4.9 None
SRR5341313 Sensitive La1.7;lineage4.9;lineage7 None
ERR502943 Sensitive lineage2.2.1;lineage4 None
SRR26399973 Other La3;lineage4.9 None
ERR9786627 Other lineage4.1.2.1 None
ERR3797017 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR4811142 RR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
ERR4820773 HR-TB lineage4.9 None
SRR3675529 Other lineage2.1;lineage4.9;lineage6.3 None
SRR6044790 Other lineage2.1;lineage4.9 None
ERR2693231 Other La1.6;La3;lineage4.6.4;lineage4.9 None
ERR736863 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR3675574 Other lineage4.6.3;lineage4.9;lineage6.3 None
ERR4811105 HR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
ERR2693254 Other La1.6;La3;lineage4.9 None
SRR3675216 Other lineage2.1;lineage4.9 None
ERR2027263 Other lineage4 None
ERR400345 Other lineage4.9 None
ERR4816999 Other None
ERR11465665 Other lineage4.1.1.3 None
SRR29051077 Other lineage4.9 None
SRR3675248 Other lineage4.9 None
SRR1196474 Other lineage3.1.1 None
SRR12708411 HR-TB lineage1.2.2.2 None
SRR1184380 Other lineage2.1;lineage4.9 None
SRR6045327 Other lineage2.1;lineage4.3.2;lineage4.9 None
SRR6046644 HR-TB La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 None
ERR176793 Other lineage4.1.1.1 None
SRR3675236 Other None
ERR212121 HR-TB lineage4.9;lineage6.3 None
ERR3283044 Other lineage4 None
ERR3804169 HR-TB lineage4.1.3 None
ERR4819877 HR-TB lineage4.9 None
ERR4817731 HR-TB lineage4.9 None
ERR4816478 HR-TB lineage4 None
SRR3675541 Sensitive lineage4.9 None
ERR4816466 HR-TB lineage4.9 None
SRR1172728 RR-TB La3 None