Rv1819c - c.-169C>G
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
1 Sensitive
1 RR-TB
38 HR-TB
19 MDR-TB
2 Pre-XDR-TB
1 XDR-TB
32 Other
lineage Counts
| lineage | Count |
|---|---|
| 9 | |
| M.canetti;lineage2.1;lineage4.9;lineage6.3 | 4 |
| lineage4.9 | 8 |
| M.canetti;lineage2.1;lineage4.9 | 12 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage2.2 | 1 |
| lineage4.9;lineage6.3 | 3 |
| La3;lineage4.9 | 2 |
| lineage2.1 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage3 | 1 |
| La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 2 |
| lineage2.2.1 | 5 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9 | 9 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 3 |
| M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | 1 |
| lineage2.1;lineage4.9 | 3 |
| lineage2.2.1.2 | 1 |
| La3;M.canetti;lineage2.1;lineage3.1 | 1 |
| La1.7 | 1 |
| lineage4.1.3 | 2 |
| lineage2.2.2;lineage4 | 1 |
| lineage4.7 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | 2 |
| lineage6.3.1 | 1 |
| lineage4.8 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 3 |
| lineage2.2.1;lineage3 | 1 |
| lineage4.1.1;lineage4.9 | 1 |
| lineage4.1.1.1 | 1 |
| La3;lineage2.2.1 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| La3;M.canetti;lineage4.8;lineage4.9 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.1;lineage6.3 | 1 |
| La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 94 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6789626 | Other | None | ERR5311078 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR29051077 | Other | lineage4.9 | None | ERR4811105 | HR-TB | None | ERR161033 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR28119753 | Other | lineage4.9 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | SRR29093909 | Other | lineage4.9 | None | ERR8976043 | HR-TB | lineage2.2 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | SRR29017461 | Other | La3;lineage4.9 | None | SRR3675515 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR5311089 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR20969677 | HR-TB | lineage2.1 | None | SRR6325444 | MDR-TB | M.canetti;lineage2.1;lineage6.3 | None | SRR28119777 | Other | lineage4.9 | None | SRR5341332 | Pre-XDR-TB | lineage3 | None | SRR3675450 | HR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR28119811 | Other | lineage2.2.1 | None | ERR5311102 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3283017 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 | None | ERR5311090 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR323038 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR6325448 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR3675554 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR124652 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | ERR323047 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR3675558 | HR-TB | M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | None | ERR5311098 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR1035239 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR4797054 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR4815604 | Other | None | ERR5311081 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR323034 | MDR-TB | La3;M.canetti;lineage2.1;lineage3.1 | None | ERR5311100 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR126608 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR6325445 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR4830353 | Other | La1.7 | None | SRR3675486 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR323064 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR26159043 | Other | lineage4.9 | None | ERR4810741 | HR-TB | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR4811142 | RR-TB | None | ERR3283016 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR4811075 | Other | None | ERR4811311 | Other | None | SRR29093105 | Other | lineage2.2.2;lineage4 | None | ERR4819932 | Sensitive | lineage4.7 | None | ERR5311082 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR12142341 | HR-TB | lineage2.2.1 | None | SRR12416824 | HR-TB | None | ERR4817893 | Other | lineage4.8 | None | ERR126618 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR4816585 | Other | lineage2.2.1 | None | SRR25827497 | XDR-TB | lineage2.2.1;lineage3 | None | ERR4188350 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6325442 | HR-TB | lineage4.1.1;lineage4.9 | None | SRR6325447 | HR-TB | lineage4.1.1.1 | None | SRR26937071 | MDR-TB | La3;lineage2.2.1 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR5311096 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR28119752 | Other | lineage4.9 | None | ERR323033 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR25827682 | Other | None | SRR28119805 | Other | lineage4.9 | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | ERR4814352 | Other | lineage2.2.1 | None | SRR10808730 | Other | lineage4.9 | None | ERR126600 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR3675568 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | ERR323060 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR6358837 | HR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR3797016 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR038268 | HR-TB | La3;M.canetti;lineage4.8;lineage4.9 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675322 | HR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | None | ERR323063 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR6046514 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR294248 | MDR-TB | lineage2.1;lineage4.9 | None | SRR26399973 | Other | La3;lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | ERR124651 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | ERR124642 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | ERR323040 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None |
|---|
