Rv0006 - c.-998C>G
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
21 Sensitive
0 RR-TB
19 HR-TB
4 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
69 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 49 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage2.2.1 | 10 |
| lineage4.7 | 2 |
| 11 | |
| lineage2.1;lineage4.9 | 7 |
| lineage4 | 3 |
| La1.7;lineage4.9 | 1 |
| lineage4.1.3 | 2 |
| lineage4.1.2.1 | 1 |
| lineage4.9;lineage6.3 | 2 |
| lineage2.1;lineage6.3 | 2 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| La1.8.1 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 5 |
| La1.2.BCG;La1.8.1 | 1 |
| M.canetti;lineage1 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage4.6.2.2 | 2 |
| lineage3 | 2 |
| lineage4.1.2 | 1 |
| lineage2.2 | 1 |
| lineage4.9;lineage7 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| lineage4.8 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| La1;lineage4.9 | 1 |
| lineage6 | 1 |
| lineage4.8.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 115 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4769452 | Other | lineage4.9 | None | SRR3675311 | Other | lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | SRR11662690 | HR-TB | lineage4.9 | None | SRR5341456 | Other | lineage4.9 | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | ERR926156 | Sensitive | lineage4.9 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR6045555 | Other | lineage4.9 | None | SRR7496523 | Other | lineage4.7 | None | SRR3675572 | Other | None | SRR3675457 | Other | lineage4.9 | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | ERR3797029 | Other | lineage4.9 | None | SRR6045053 | Other | lineage4 | None | ERR926160 | Sensitive | lineage4.9 | None | ERR13264981 | Sensitive | La1.7;lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | SRR6046133 | HR-TB | lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | ERR4810624 | HR-TB | lineage2.2.1 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR4819932 | Sensitive | lineage4.7 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | SRR3675236 | Other | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | ERR9117721 | HR-TB | None | ERR4816466 | HR-TB | lineage4.9 | None | SRR20969708 | HR-TB | lineage2.2.1 | None | SRR6046594 | Sensitive | lineage4.9 | None | ERR9117709 | Other | None | SRR3675549 | Other | lineage4.9 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR14782405 | HR-TB | lineage4.9 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | SRR7496509 | Other | None | SRR7240033 | Other | La1.8.1 | None | ERR6359082 | Other | lineage4.9 | None | ERR9786843 | Other | None | SRR3675221 | Other | lineage4.9 | None | ERR4814352 | Other | lineage2.2.1 | None | SRR6046305 | Sensitive | lineage4.9 | None | ERR926165 | Sensitive | lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | SRR1180137 | Other | lineage2.2.1 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | SRR3675275 | Other | lineage4.9 | None | SRR18213713 | HR-TB | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | ERR4815604 | Other | None | ERR3797069 | Other | lineage4.9 | None | SRR5535933 | Other | lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | ERR926162 | Sensitive | lineage4.9 | None | ERR736848 | Other | lineage4.9 | None | SRR6046066 | Other | lineage4.9 | None | ERR4800341 | Other | None | ERR4816999 | Other | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | SRR15014655 | Other | M.canetti;lineage1 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR926159 | Sensitive | lineage4.9 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR971389 | Sensitive | lineage4.9 | None | SRR20969731 | Other | lineage2.2.1 | None | ERR4816585 | Other | lineage2.2.1 | None | SRR5341332 | Pre-XDR-TB | lineage3 | None | ERR926164 | Other | lineage4.9 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | ERR4799513 | HR-TB | lineage2.2 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR7496472 | Other | lineage4.9 | None | SRR6046485 | Other | lineage4.9 | None | ERR3797070 | Other | lineage4.9 | None | SRR28044873 | Pre-XDR-TB | lineage3 | None | ERR3283055 | HR-TB | lineage4.9 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | ERR4818615 | Sensitive | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | SRR23961558 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR926157 | Sensitive | lineage4.9 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | SRR3675214 | Other | lineage4.9 | None | SRR6046046 | Other | lineage4.9 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4799025 | Other | lineage4.8 | None | SRR14782054 | Other | lineage4.9 | None | SRR10809074 | Sensitive | lineage4.9 | None | SRR29050859 | Other | lineage4.9 | None | SRR6045219 | HR-TB | lineage4.9 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR9786525 | Other | lineage4 | None | ERR926163 | Other | lineage4.9 | None | ERR3283044 | Other | lineage4 | None | ERR9787165 | Other | lineage6 | None | ERR926154 | Sensitive | lineage4.9 | None | ERR3797046 | HR-TB | lineage4.9 | None | SRR12708389 | MDR-TB | lineage4.8.1 | None |
|---|
