EBG00000313339 - n.288T>A
Drug resistance types
136 Sensitive
4 RR-TB
103 HR-TB
21 MDR-TB
13 Pre-XDR-TB
0 XDR-TB
100 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 19 |
| lineage3.1 | 2 |
| 113 | |
| lineage2 | 2 |
| lineage4.3.3 | 5 |
| lineage4.9 | 50 |
| lineage4.1.1.3 | 1 |
| lineage2.2.1.1 | 3 |
| lineage2.1 | 4 |
| lineage3 | 5 |
| lineage7;lineage2.2.1.2 | 1 |
| lineage2.2 | 4 |
| lineage3.1.3 | 1 |
| lineage4 | 101 |
| lineage4.8 | 7 |
| lineage1.1.1 | 2 |
| lineage4.1 | 4 |
| lineage4.1.1 | 4 |
| lineage4.9;lineage4.8.1;lineage4.1.1 | 1 |
| lineage4.4.1.1 | 2 |
| lineage4.3.4.2.1 | 2 |
| lineage4;lineage2 | 1 |
| lineage4.1.2.1 | 12 |
| lineage4.8;La3 | 1 |
| lineage4.2.2.2 | 1 |
| lineage4.2.1 | 3 |
| lineage4.3.2.1 | 3 |
| lineage1.1.2 | 1 |
| La2 | 1 |
| lineage4.7 | 1 |
| lineage4.1.2 | 2 |
| lineage3;La3 | 1 |
| lineage4.6.1.1 | 3 |
| La1.2 | 1 |
| lineage1.2.2.2 | 1 |
| lineage3.1.2 | 1 |
| lineage3.1.2.1 | 1 |
| lineage2.2.1.2 | 1 |
| lineage4.5 | 2 |
| lineage1.1.3.1 | 1 |
| lineage4.6.2.2 | 1 |
| lineage6.1.3 | 2 |
| lineage6.3.1 | 1 |
| lineage6 | 1 |
| La1.8.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 377 |
Geographic prevalence
Country level data for this variant is available for 3 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184372 | MDR-TB | None | SRR1184381 | MDR-TB | None | SRR1184380 | HR-TB | None | SRR1184388 | Other | None | SRR1196566 | HR-TB | None | SRR1196494 | MDR-TB | None | SRR1196546 | HR-TB | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1196677 | HR-TB | lineage2 | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | SRR13837915 | Sensitive | lineage4.9 | None | SRR13591342 | HR-TB | lineage4.1.1.3 | None | SRR1196768 | MDR-TB | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR12142341 | HR-TB | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR13837584 | Sensitive | lineage4.9 | None | SRR18003019 | Other | lineage2.2.1 | None | SRR15600376 | HR-TB | lineage2.2.1.1 | None | SRR16157123 | Other | lineage4.9 | None | SRR14782405 | HR-TB | None | SRR14801749 | Sensitive | None | SRR15368973 | Other | None | SRR1710057 | Other | lineage2.1 | None | SRR17832802 | HR-TB | lineage3 | None | SRR19304036 | HR-TB | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR18910194 | HR-TB | lineage2.2 | None | SRR18913742 | Sensitive | lineage3.1.3 | None | SRR20632814 | Sensitive | lineage4 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR20969677 | HR-TB | lineage2 | None | ERR11081258 | Other | lineage4.8 | None | SRR20970016 | Other | lineage2.2 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | ERR11081257 | Other | lineage4.8 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR21658550 | Other | lineage1.1.1 | None | SRR22424787 | Sensitive | lineage4.9 | None | ERR11138607 | Pre-XDR-TB | lineage2.2.1 | None | SRR12708416 | Sensitive | lineage4.1 | None | SRR3675472 | Sensitive | lineage4.9 | None | SRR3675455 | Sensitive | lineage4 | None | SRR3675473 | Sensitive | lineage4.9 | None | SRR3675222 | Other | None | ERR176793 | Other | lineage4.1.1 | None | SRR3675488 | HR-TB | None | SRR3675209 | Sensitive | lineage4.9 | None | ERR4814639 | HR-TB | lineage4 | None | SRR3675210 | Sensitive | lineage4.9 | None | ERR779852 | Sensitive | lineage4.9;lineage4.8.1;lineage4.1.1 | None | SRR3416776 | Other | lineage2.1 | None | SRR3675229 | Other | lineage4 | None | SRR3675292 | Sensitive | lineage4 | None | ERR702405 | Sensitive | lineage2.1 | None | ERR1750920 | Sensitive | lineage4.4.1.1 | za | SRR3675247 | Other | lineage4.9 | None | SRR3675266 | Sensitive | lineage4.9 | None | ERR176549 | Other | lineage4.3.4.2.1 | None | SRR3675279 | Other | None | SRR3675283 | Sensitive | lineage4.9 | None | SRR3675318 | Other | lineage4.9 | None | SRR3675514 | Sensitive | lineage4.9 | None | ERR176740 | HR-TB | None | ERR176751 | HR-TB | None | SRR3675522 | Other | None | SRR3675548 | Sensitive | lineage4.9 | None | SRR3675541 | Sensitive | lineage4.9 | None | ERR4816110 | Sensitive | lineage4.9 | gb | SRR3675542 | Other | lineage4.9 | None | ERR4816113 | Sensitive | lineage4.1.1 | None | SRR3675553 | Sensitive | lineage4.9 | None | SRR3675555 | HR-TB | None | SRR3742665 | HR-TB | None | ERR212121 | HR-TB | None | ERR4816470 | Other | lineage3 | None | SRR5341384 | Sensitive | lineage4.9 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR4816762 | Other | lineage4;lineage2 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | ERR4815815 | Sensitive | lineage4 | None | SRR5341453 | Sensitive | None | ERR4817893 | Other | lineage4.8;La3 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR2446566 | Other | lineage4.1 | None | ERR4818831 | Other | lineage3 | None | ERR4817915 | RR-TB | lineage4.9 | None | ERR4818811 | Pre-XDR-TB | lineage2.2.1 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR2513470 | Other | lineage4.2.2.2 | None | ERR2512770 | Other | lineage4.2.1 | None | ERR4818561 | HR-TB | lineage4 | None | ERR2513724 | Sensitive | lineage4.3.2.1 | None | ERR4817552 | Sensitive | lineage2.2.1.1 | None | SRR5341366 | Sensitive | lineage4 | None | SRR5341387 | Other | lineage4 | None | SRR5341425 | Other | lineage4 | None | SRR5341396 | Other | lineage4 | None | ERR4819314 | Other | lineage1.1.1 | None | ERR4819546 | HR-TB | lineage3 | None | SRR5341303 | RR-TB | lineage4 | None | SRR5341456 | Other | None | SRR5341455 | Sensitive | lineage4 | None | SRR5341300 | Other | lineage4 | None | SRR5341299 | Sensitive | lineage4 | None | SRR5341437 | Sensitive | lineage4.9 | None | SRR5341296 | Sensitive | lineage4.9 | None | SRR5341298 | Sensitive | lineage4 | None | SRR5341308 | Sensitive | lineage4 | None | SRR5341302 | HR-TB | None | SRR5341330 | HR-TB | None | SRR5341323 | Sensitive | lineage4 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341345 | Sensitive | lineage4.9 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341467 | Other | lineage4 | None | ERR2693238 | HR-TB | lineage4.9 | None | SRR5341461 | Sensitive | lineage4 | None | ERR2517475 | Other | lineage4 | None | SRR5341469 | Other | lineage4 | None | SRR5341470 | HR-TB | None | SRR5535933 | HR-TB | None | SRR6045480 | Other | lineage4.1.1 | None | SRR6045503 | HR-TB | None | SRR6045526 | HR-TB | None | ERR2652925 | HR-TB | lineage4.9 | None | SRR6045706 | Sensitive | lineage4 | None | SRR6045519 | HR-TB | None | ERR2660539 | Other | lineage4.9 | None | ERR4821655 | Sensitive | lineage4 | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | SRR6046046 | Other | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR6045050 | Sensitive | lineage4.3.2.1 | None | SRR6044835 | Sensitive | lineage4 | None | SRR6045053 | Other | None | SRR6045158 | Other | lineage4.9 | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR6045217 | Other | lineage4 | None | SRR6045327 | HR-TB | None | SRR6046245 | Other | lineage4.9 | None | SRR6045359 | Sensitive | lineage4.9 | None | SRR6046066 | HR-TB | None | SRR6045371 | Sensitive | lineage4.2.1 | None | SRR6046225 | HR-TB | None | SRR6046397 | Other | None | SRR6046299 | HR-TB | None | ERR4830353 | Other | None | ERR4829530 | Pre-XDR-TB | lineage4.8 | None | SRR6046863 | Sensitive | lineage1.1.2 | None | SRR6046611 | HR-TB | lineage4.9 | None | SRR6046492 | Other | None | SRR6046540 | HR-TB | None | SRR6046802 | Other | lineage4 | None | SRR6046878 | HR-TB | lineage4 | None | SRR6046897 | Sensitive | lineage4 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6785315 | Sensitive | lineage4.3.3 | None | SRR6511621 | HR-TB | None | ERR4832052 | HR-TB | lineage2.1 | vn | ERR4831638 | Sensitive | None | ERR4831117 | HR-TB | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | SRR7496471 | Sensitive | None | SRR6789624 | MDR-TB | lineage4.1 | None | SRR6832644 | Other | lineage4.3.3 | None | ERR502510 | Sensitive | lineage4 | None | ERR502524 | HR-TB | La2 | None | ERR502908 | HR-TB | lineage2.2.1 | None | ERR502532 | HR-TB | None | ERR502943 | HR-TB | None | SRR7496523 | Other | lineage4.7 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR7535082 | Sensitive | lineage4 | None | SRR7535086 | Other | None | ERR323107 | Other | lineage4 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR7755654 | Pre-XDR-TB | lineage4.2.1 | None | ERR1035122 | Sensitive | None | ERR323066 | Sensitive | lineage4 | None | ERR323085 | Sensitive | lineage4 | None | ERR067712 | HR-TB | lineage4 | None | ERR1023302 | MDR-TB | lineage3;La3 | None | ERR323039 | HR-TB | None | ERR323043 | HR-TB | None | ERR323053 | HR-TB | None | ERR067699 | HR-TB | lineage4 | None | ERR1199132 | Sensitive | lineage4.6.1.1 | None | ERR1063855 | Other | lineage4 | None | ERR1063896 | Sensitive | None | ERR1035157 | Other | lineage4.9 | None | ERR1063883 | Sensitive | lineage4 | None | ERR133825 | Sensitive | lineage4 | None | ERR323115 | Sensitive | lineage4 | None | ERR3283047 | HR-TB | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3283014 | HR-TB | None | ERR3283055 | HR-TB | None | ERR349296 | Sensitive | lineage4 | None | ERR349298 | Sensitive | lineage4 | None | ERR3283057 | HR-TB | lineage4 | None | ERR3445504 | HR-TB | None | ERR349264 | Sensitive | lineage4 | None | ERR349265 | Sensitive | lineage4 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR349299 | Sensitive | lineage4 | None | ERR363437 | Sensitive | lineage4 | None | ERR349330 | Sensitive | lineage4 | None | ERR363421 | Sensitive | lineage4 | None | ERR363426 | Sensitive | lineage4 | None | ERR363446 | Sensitive | lineage4 | None | ERR363447 | Sensitive | lineage4 | None | ERR363445 | Sensitive | lineage4 | None | ERR363449 | Sensitive | lineage4 | None | ERR363453 | Sensitive | lineage4 | None | ERR363474 | Sensitive | lineage4 | None | ERR363456 | Sensitive | lineage4 | None | ERR363509 | Sensitive | lineage4 | None | ERR363479 | Sensitive | lineage4 | None | ERR363498 | Sensitive | lineage4 | None | ERR363502 | Sensitive | lineage4 | None | ERR363499 | Sensitive | lineage4 | None | ERR363490 | Sensitive | lineage4 | None | ERR363500 | Sensitive | lineage4 | None | ERR363506 | Sensitive | lineage4 | None | ERR369158 | Sensitive | lineage4 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR369151 | Sensitive | lineage4.9 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR369159 | Sensitive | lineage4 | None | ERR3797048 | HR-TB | None | ERR373947 | Sensitive | lineage4 | None | ERR3797046 | HR-TB | None | ERR369162 | Sensitive | lineage4 | None | ERR369163 | Sensitive | lineage4 | None | ERR373945 | HR-TB | lineage4 | None | ERR373946 | Sensitive | lineage4 | None | ERR3797064 | Sensitive | None | ERR3797079 | Sensitive | lineage4 | None | ERR3797063 | HR-TB | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR3797081 | Sensitive | lineage4 | None | ERR3797087 | Sensitive | lineage4 | None | ERR400320 | Sensitive | lineage4 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | ERR387051 | HR-TB | None | ERR4769452 | HR-TB | None | ERR400326 | Sensitive | lineage4 | None | ERR400345 | Other | lineage4 | None | ERR4024991 | Other | None | ERR4178226 | Sensitive | lineage4 | None | ERR4407463 | HR-TB | None | ERR400336 | Sensitive | lineage4 | None | ERR4188247 | HR-TB | None | ERR4769450 | HR-TB | None | ERR4769457 | Other | lineage4.9 | None | ERR4769497 | HR-TB | La1.2 | None | ERR4796254 | Sensitive | lineage4 | None | ERR4797184 | Sensitive | lineage4 | None | ERR4796577 | MDR-TB | None | ERR4796584 | Sensitive | lineage1.2.2.2 | None | ERR4796929 | Sensitive | lineage4 | None | ERR4797313 | HR-TB | None | ERR4797264 | Sensitive | None | ERR4798431 | HR-TB | None | ERR4798099 | Other | None | ERR4797474 | Other | None | ERR4798504 | Other | lineage3 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4799547 | Sensitive | lineage2.2.1 | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4798823 | HR-TB | lineage4 | None | ERR4799025 | Pre-XDR-TB | None | ERR4799171 | Pre-XDR-TB | lineage4.8 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4800102 | Sensitive | lineage3.1.2.1 | None | ERR4799989 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR4810741 | HR-TB | None | ERR4811030 | Sensitive | None | ERR4811022 | HR-TB | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR4811493 | HR-TB | None | ERR4811105 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR4812155 | Sensitive | None | ERR6197030 | Other | lineage4.9 | None | ERR6358991 | HR-TB | None | ERR6358979 | Other | None | ERR6866022 | Other | None | ERR6865502 | Sensitive | lineage4 | None | ERR6866410 | Sensitive | None | ERR736848 | HR-TB | None | ERR6866547 | Sensitive | lineage4 | None | ERR702406 | HR-TB | None | ERR736834 | Sensitive | lineage4 | None | ERR736867 | HR-TB | None | ERR736856 | HR-TB | lineage4 | None | ERR736865 | HR-TB | None | ERR736872 | Sensitive | lineage4 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR736874 | HR-TB | None | ERR751326 | Sensitive | lineage4 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR970445 | MDR-TB | lineage2.2.1 | None | ERR752229 | Other | lineage4.5 | None | ERR970413 | MDR-TB | lineage2.2.1 | None | ERR9786627 | Other | lineage4.1.2.1 | None | ERR9786440 | Other | lineage4.1 | None | ERR9786569 | Other | lineage4.8 | None | ERR9786604 | Other | None | ERR9786639 | Sensitive | lineage4.8 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786515 | Other | lineage4.1.2.1 | None | ERR9786617 | Other | lineage4.1.1 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786671 | Other | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9787153 | Other | lineage6.1.3 | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR9787165 | Other | lineage6 | None | ERR9787197 | Other | None | ERR987765 | Sensitive | lineage4.6.1.1 | None | ERR9787256 | Other | lineage6.1.3 | None | ERR987722 | HR-TB | None | SRR10808399 | Sensitive | lineage4 | None | SRR1172234 | Other | None | SRR10808490 | Sensitive | lineage2.2.1.1 | None | SRR10808805 | Sensitive | None | SRR10809074 | Sensitive | lineage4 | None | SRR1169194 | Other | None | SRR10808668 | Sensitive | lineage2.2.1 | None | SRR11462861 | Other | La1.8.1 | None | SRR1158918 | Sensitive | lineage4 | None | SRR1172817 | HR-TB | None | SRR1172310 | HR-TB | None | SRR1172728 | MDR-TB | None | SRR1173166 | Other | lineage4.9 | None | SRR1172857 | MDR-TB | None | SRR1172951 | Other | None | SRR1173118 | Other | None | SRR1173153 | HR-TB | None | SRR1173363 | HR-TB | None | SRR1173218 | Pre-XDR-TB | lineage4.3.3 | None | SRR1173384 | Other | lineage4 | None | SRR1173400 | Other | None | SRR1173562 | HR-TB | lineage4 | None | SRR1173484 | Other | lineage4 | None | SRR1173568 | Other | lineage4.9 | None | SRR1173788 | Other | None | SRR1173706 | Other | lineage4.9 | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173629 | Other | None | SRR1173777 | Other | lineage4 | None | SRR1173778 | Other | None | SRR1174897 | HR-TB | None | SRR1175049 | RR-TB | None | SRR1175074 | MDR-TB | None | SRR1175496 | HR-TB | lineage4.9 | None | SRR1175507 | MDR-TB | lineage4 | None | SRR1180996 | HR-TB | lineage4 | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR1175500 | MDR-TB | lineage4 | None | SRR1175508 | Other | lineage4.9 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR1184294 | HR-TB | None |
|---|
