lineage | Count |
---|---|
lineage4.8 | 4 |
lineage4.1 | 1 |
140 | |
lineage4.1.1 | 2 |
lineage2.2.1 | 9 |
lineage4 | 28 |
lineage4.3.4.2.1 | 1 |
lineage4.1.3;lineage4.1.2.1;lineage1.1.2 | 1 |
lineage4.4.1.1 | 1 |
lineage4.1.1.3 | 1 |
lineage2.2 | 2 |
La1.8.1 | 1 |
lineage4;lineage1.1 | 1 |
lineage4.1.2.1 | 9 |
lineage4.9 | 15 |
lineage5.2 | 2 |
lineage1.1 | 1 |
lineage4.3.3 | 3 |
lineage3.1 | 3 |
lineage4.6.2.2 | 5 |
La2 | 1 |
lineage4.1.3 | 2 |
La1 | 1 |
lineage2 | 2 |
lineage3 | 2 |
lineage4.6.1.1 | 1 |
lineage1.1.2 | 1 |
lineage4.3.2 | 1 |
lineage4.8;lineage4.1 | 1 |
lineage6 | 1 |
lineage2.2.1.1 | 1 |
lineage4.5 | 2 |
spoligotype | Count |
---|---|
None | 246 |
ID | Drug resistance | Lineage | Country iso2 | ERR11081257 | Other | lineage4.8 | None | SRR3675464 | HR-TB | lineage4.1 | None | ERR4815604 | HR-TB | None | ERR176793 | Other | lineage4.1.1 | None | SRR6325445 | HR-TB | None | ERR1035239 | HR-TB | None | SRR3675465 | HR-TB | None | ERR158583 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | ERR161033 | HR-TB | None | SRR3675236 | HR-TB | None | SRR3675486 | HR-TB | None | ERR181744 | HR-TB | None | SRR3675221 | HR-TB | None | SRR3675246 | Sensitive | lineage4 | None | SRR3675234 | Other | None | SRR3675311 | Other | None | ERR176549 | Other | lineage4.3.4.2.1 | None | SRR3675312 | HR-TB | lineage4 | None | ERR2229542 | Other | lineage4.8 | None | SRR3675502 | Other | None | ERR2027263 | Other | lineage4 | None | ERR4816999 | Other | None | ERR4816100 | Sensitive | lineage4.1.3;lineage4.1.2.1;lineage1.1.2 | None | ERR212123 | Other | None | ERR2229084 | Sensitive | lineage4.8 | dk | ERR4817060 | RR-TB | None | SRR3675558 | HR-TB | None | SRR3675545 | HR-TB | None | SRR3675550 | Other | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | SRR3675572 | Other | None | ERR4816466 | HR-TB | None | SRR3675574 | HR-TB | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR4816585 | Other | lineage2.2 | None | SRR3742665 | HR-TB | None | SRR7496472 | Other | None | ERR4818021 | Other | La1.8.1 | None | SRR5341461 | Sensitive | lineage4 | None | ERR4818615 | Other | None | ERR234659 | HR-TB | None | SRR5341366 | Sensitive | lineage4 | None | ERR4819322 | Other | lineage4;lineage1.1 | None | SRR5341387 | Other | lineage4 | None | SRR5341418 | Other | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR2514692 | Other | None | SRR5341455 | Sensitive | lineage4 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR5341300 | Other | lineage4 | None | SRR5341299 | Sensitive | lineage4 | None | SRR5341298 | Sensitive | lineage4 | None | SRR5341469 | Other | lineage4 | None | SRR5341302 | HR-TB | None | SRR5341308 | Sensitive | lineage4 | None | SRR5341333 | HR-TB | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | ERR2693231 | Other | None | SRR6044790 | HR-TB | None | SRR6045555 | HR-TB | None | SRR6046133 | HR-TB | None | ERR2693239 | HR-TB | None | ERR2693230 | Other | None | SRR6045503 | HR-TB | None | SRR6045526 | HR-TB | None | SRR6044855 | Other | lineage4.9 | None | SRR6045327 | HR-TB | None | SRR6045233 | HR-TB | None | SRR6045952 | HR-TB | None | SRR6046066 | HR-TB | None | SRR6046225 | HR-TB | None | SRR6046305 | Other | lineage4.9 | None | SRR6325442 | HR-TB | None | ERR4828143 | Other | lineage2.2.1 | vn | SRR6046362 | HR-TB | None | ERR278594 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6046460 | HR-TB | None | SRR6046540 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | SRR6325447 | HR-TB | None | SRR6046824 | HR-TB | None | SRR6046594 | HR-TB | lineage4 | None | SRR6046644 | HR-TB | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6511621 | HR-TB | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR323036 | HR-TB | None | ERR3077978 | Other | lineage1.1 | None | SRR7496509 | Other | None | SRR6831950 | Other | lineage4.3.3 | None | ERR323034 | HR-TB | lineage3.1 | None | ERR5311090 | HR-TB | None | ERR5311099 | HR-TB | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | SRR6789626 | Other | None | ERR294248 | HR-TB | None | ERR502524 | HR-TB | La2 | None | ERR502532 | HR-TB | None | ERR502889 | Other | None | ERR5311081 | HR-TB | None | SRR7585435 | Other | lineage4.9 | None | SRR7535086 | Other | None | ERR323041 | HR-TB | None | ERR323038 | HR-TB | None | ERR323063 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323043 | HR-TB | None | ERR323055 | HR-TB | None | ERR067699 | HR-TB | lineage4 | None | ERR323066 | Sensitive | lineage4 | None | ERR323085 | Sensitive | lineage4 | None | ERR067681 | HR-TB | None | ERR1035157 | Other | lineage4.9 | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR1035122 | Sensitive | None | ERR1063896 | Sensitive | None | ERR1063857 | HR-TB | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR11049020 | Other | lineage4.8 | None | ERR137286 | Sensitive | lineage4 | None | ERR133825 | Sensitive | lineage4 | None | ERR133986 | HR-TB | None | ERR323115 | Sensitive | lineage4 | None | ERR3283025 | HR-TB | None | ERR3283017 | HR-TB | None | ERR3283027 | HR-TB | None | ERR3283024 | Other | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3283043 | Other | lineage4.9 | None | ERR3283036 | HR-TB | None | ERR3283032 | HR-TB | None | ERR3468544 | HR-TB | None | ERR3439432 | Other | None | ERR3797036 | HR-TB | None | ERR3797014 | Other | None | ERR3797017 | Other | None | ERR3797016 | HR-TB | None | ERR3797043 | HR-TB | None | ERR3797044 | Other | None | ERR3797058 | Other | lineage4.9 | None | ERR3797082 | Other | lineage4.9 | None | ERR3797069 | Other | None | ERR4407463 | HR-TB | None | ERR3797083 | HR-TB | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR387051 | HR-TB | None | ERR4188350 | HR-TB | None | ERR3797086 | Other | lineage4.9 | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR403298 | HR-TB | lineage4 | None | ERR4769521 | HR-TB | None | ERR4798262 | HR-TB | La1 | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR6358837 | HR-TB | None | ERR4798406 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR5336148 | Other | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4800341 | Other | lineage3 | None | ERR4810741 | HR-TB | None | ERR4811022 | HR-TB | None | ERR4811105 | HR-TB | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR736856 | HR-TB | lineage4 | None | ERR702404 | HR-TB | None | ERR702406 | HR-TB | None | ERR736834 | Sensitive | lineage4 | None | ERR736848 | HR-TB | None | ERR6359045 | HR-TB | None | ERR6866807 | HR-TB | lineage4 | None | ERR736872 | Sensitive | lineage4 | None | ERR736867 | HR-TB | None | ERR751326 | Sensitive | lineage4 | None | ERR736874 | HR-TB | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9117709 | HR-TB | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR8976043 | HR-TB | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR9786525 | Other | lineage4.8;lineage4.1 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9786617 | Other | lineage4.1.1 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786604 | Other | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786671 | Other | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | SRR1172234 | Other | None | ERR9786843 | Other | None | SRR1158918 | Sensitive | lineage4 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1169194 | Other | None | ERR9787165 | Other | lineage6 | None | ERR9787197 | Other | None | SRR1173118 | Other | None | SRR1172951 | Other | None | SRR1172857 | MDR-TB | None | SRR1173363 | HR-TB | None | SRR1173153 | HR-TB | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173400 | Other | None | SRR1173562 | HR-TB | lineage4 | None | SRR1173568 | Other | lineage4.9 | None | SRR1173384 | Other | lineage4 | None | SRR1173788 | Other | None | SRR1173706 | Other | lineage4.9 | None | SRR1173778 | Other | None | SRR1173629 | Other | None | SRR1175074 | MDR-TB | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR1184294 | HR-TB | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1196494 | MDR-TB | None | SRR1184388 | Other | None | SRR1184381 | MDR-TB | None | SRR1184380 | HR-TB | None | SRR12416824 | HR-TB | None | SRR1196566 | HR-TB | None | SRR1196768 | MDR-TB | None | SRR1196546 | HR-TB | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | SRR12142341 | HR-TB | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR13861666 | Sensitive | lineage4.9 | None | SRR13423544 | Other | lineage4.5 | None | SRR1640750 | HR-TB | None | SRR15368973 | Other | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR18003019 | Other | lineage2.2.1 | None | SRR19304036 | HR-TB | None | SRR21240211 | Sensitive | lineage4.3.3 | None | SRR19303884 | HR-TB | None | SRR20969677 | HR-TB | lineage2 | None |
---|