Rv2754c - c.174C>G
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
7 Sensitive
1 RR-TB
23 HR-TB
10 MDR-TB
5 Pre-XDR-TB
1 XDR-TB
110 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.2.1 | 9 |
| 25 | |
| lineage2.1;lineage4.9 | 13 |
| lineage4.9;lineage6.3 | 4 |
| La1.7;lineage4.9;lineage6 | 1 |
| lineage4.9 | 35 |
| La3;lineage2.1;lineage4.9 | 2 |
| La3;lineage4.9 | 3 |
| La1.7;lineage4.9 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 5 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.2.2.2 | 1 |
| lineage4.8 | 5 |
| lineage2.2.1 | 11 |
| lineage4.7 | 2 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| lineage4.1.3 | 2 |
| lineage6.3.1 | 1 |
| lineage1.1.2 | 1 |
| lineage2.1;lineage6.3 | 2 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 2 |
| lineage3.1 | 1 |
| La1.2.BCG;La1.8.1 | 1 |
| lineage2.2.1.2 | 1 |
| lineage2.1 | 3 |
| lineage4.3.3 | 2 |
| lineage4.1.1.1 | 2 |
| lineage4.6.1 | 1 |
| lineage3.1.1 | 1 |
| La3 | 2 |
| lineage2.2.1;lineage3 | 1 |
| lineage4.1.2 | 1 |
| lineage4.2.1 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| lineage4.3.4.2 | 1 |
| lineage4 | 3 |
| lineage4.3.4.2.1 | 1 |
| lineage5.2 | 2 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 157 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR4407463 | HR-TB | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | SRR1173788 | Sensitive | lineage4.9 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | SRR3675214 | Other | lineage4.9 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | SRR26399973 | Other | La3;lineage4.9 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR2513470 | Other | lineage4.2.2.2 | None | SRR1173384 | Other | lineage4.9 | None | SRR6046066 | Other | lineage4.9 | None | ERR11081257 | Other | lineage4.8 | None | SRR6789626 | Other | None | SRR29051077 | Other | lineage4.9 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR4819932 | Sensitive | lineage4.7 | None | SRR6046644 | HR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | ERR9786569 | Other | lineage4.8 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR12142341 | HR-TB | lineage2.2.1 | None | ERR9117721 | HR-TB | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | ERR4816585 | Other | lineage2.2.1 | None | SRR25827687 | MDR-TB | lineage1.1.2 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR9117709 | Other | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR6785413 | Other | lineage2.2.1 | None | ERR473332 | Other | lineage4.9 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | ERR2229542 | Other | lineage4.8 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR3675311 | Other | lineage4.9 | None | SRR29097037 | Other | lineage4.9 | None | SRR6789621 | Other | lineage4.9 | None | ERR4814352 | Other | lineage2.2.1 | None | SRR1184372 | MDR-TB | None | ERR9786604 | Other | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | SRR1196566 | Other | lineage4.9 | None | SRR29096541 | Other | lineage4.9 | None | SRR1172951 | Other | lineage4.9 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1173778 | Other | lineage4.9 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | SRR1196768 | MDR-TB | None | SRR1196583 | Other | lineage4.9 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | ERR4797054 | Pre-XDR-TB | lineage2.2.1.2 | None | SRR1710057 | Other | lineage2.1 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR4815604 | Other | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | ERR6358979 | Other | lineage4.9 | None | SRR15368973 | Other | lineage4.9 | None | ERR13267017 | Pre-XDR-TB | lineage2.2.1 | None | ERR176793 | Other | lineage4.1.1.1 | None | SRR10809074 | Sensitive | lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | SRR29016901 | Other | La3;lineage4.9 | None | ERR4816999 | Other | None | SRR26159043 | Other | lineage4.9 | None | ERR4811105 | HR-TB | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR4810741 | HR-TB | None | ERR6358755 | Other | lineage4.6.1 | None | SRR1196474 | Other | lineage3.1.1 | None | SRR1196546 | Other | lineage4.9 | None | SRR29051093 | Other | lineage4.9 | None | SRR3675236 | Other | None | SRR1172728 | RR-TB | La3 | None | SRR25827497 | XDR-TB | lineage2.2.1;lineage3 | None | ERR702406 | Other | lineage2.1 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | SRR6785268 | Sensitive | lineage4.2.1 | None | SRR1172234 | Other | lineage4.9 | None | SRR7496509 | Other | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR9786642 | Other | lineage4.1.2.1 | None | SRR1184381 | MDR-TB | None | ERR4819781 | Other | lineage2.2.1 | None | SRR7496523 | Other | lineage4.7 | None | SRR3675572 | Other | None | SRR3675457 | Other | lineage4.9 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675275 | Other | lineage4.9 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR18213713 | HR-TB | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR1063896 | Sensitive | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3797069 | Other | lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | SRR3416776 | Other | lineage2.1 | None | SRR1169194 | Other | lineage4.9 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | ERR12015083 | Other | lineage4.8 | None | ERR1035157 | Other | lineage4.9 | None | ERR176549 | Other | lineage4.3.4.2 | None | ERR2027263 | Other | lineage4 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR4800341 | Other | None | ERR9786515 | Other | lineage4.1.2.1 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR4872094 | MDR-TB | lineage5.2 | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | SRR29017461 | Other | La3;lineage4.9 | None | SRR12416824 | HR-TB | None | ERR3283044 | Other | lineage4 | None | SRR7535086 | Other | None | ERR4817893 | Other | lineage4.8 | None | ERR212138 | HR-TB | lineage4.9 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR1172817 | Other | La3 | None | SRR1173400 | Other | lineage4.9 | None | SRR25827507 | MDR-TB | lineage4.1.1.1 | None | SRR29055629 | MDR-TB | lineage2.2.1 | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | SRR7496472 | Other | lineage4.9 | None | SRR1184294 | Other | lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | ERR3804155 | Other | lineage4.1.2.1 | None | SRR7131023 | Other | lineage4.1.2.1 | None | ERR3797070 | Other | lineage4.9 | None | SRR3675221 | Other | lineage4.9 | None | SRR1173118 | Other | lineage2.2.1 | None | SRR25827682 | Other | None | SRR28351339 | MDR-TB | lineage4 | None | SRR1172857 | Other | None | ERR9787197 | Other | None | ERR4817060 | Other | None |
|---|
