Rv2764c - c.318T>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
5 Sensitive
1 RR-TB
12 HR-TB
14 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
51 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 14 |
| 11 | |
| lineage4.9;lineage6.3 | 2 |
| lineage2.1;lineage4.9 | 4 |
| lineage2.2.1.2 | 1 |
| La2;lineage2.2 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.6.2.2 | 4 |
| lineage4.1.3 | 2 |
| lineage4.6.1 | 1 |
| lineage2.2.1 | 6 |
| lineage4.1.2.1 | 3 |
| lineage5.2 | 2 |
| lineage4 | 1 |
| La3;lineage4.9 | 4 |
| lineage1.1.2 | 1 |
| lineage4.4.1.1 | 1 |
| La3;lineage2.2.1 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| La3;lineage2.1;lineage4.9 | 2 |
| La1.7;lineage4.9 | 1 |
| La1.7;M.canetti;lineage4.9 | 1 |
| M.canetti;lineage4.9 | 2 |
| lineage4.1.1.1 | 3 |
| lineage4.8 | 2 |
| lineage3 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage2.1 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 2 |
| lineage2.1;lineage6.3 | 2 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| La2;lineage4.9 | 1 |
| lineage4.3.4 | 1 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 85 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR29017081 | Sensitive | lineage4.9 | None | SRR7496472 | Other | lineage4.9 | None | ERR9786843 | Other | None | ERR4817060 | Other | None | ERR234659 | Other | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR3283042 | Other | lineage4.9 | None | ERR4797054 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | ERR4815604 | Other | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR6358755 | Other | lineage4.6.1 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR9786525 | Other | lineage4 | None | SRR29017461 | Other | La3;lineage4.9 | None | SRR12416840 | MDR-TB | lineage4.9 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR4816585 | Other | lineage2.2.1 | None | SRR25827687 | MDR-TB | lineage1.1.2 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | SRR29055629 | MDR-TB | lineage2.2.1 | None | SRR26937071 | MDR-TB | La3;lineage2.2.1 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | SRR28119752 | Other | lineage4.9 | None | ERR3797070 | Other | lineage4.9 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | SRR3675221 | Other | lineage4.9 | None | ERR4814352 | Other | lineage2.2.1 | None | ERR4819781 | Other | lineage2.2.1 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | ERR3797069 | Other | lineage4.9 | None | SRR6045526 | Other | lineage4.9 | None | ERR13267017 | Pre-XDR-TB | lineage2.2.1 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | ERR176793 | Other | lineage4.1.1.1 | None | ERR11081257 | Other | lineage4.8 | None | SRR6789626 | Other | None | SRR29016901 | Other | La3;lineage4.9 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | SRR3675248 | Other | lineage4.9 | None | ERR9786617 | Other | lineage4.1.1.1 | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | SRR12416824 | HR-TB | None | SRR7535086 | Other | None | ERR9119500 | MDR-TB | lineage5.2 | None | SRR29096387 | Sensitive | M.canetti;lineage4.9 | None | ERR702406 | Other | lineage2.1 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR3283018 | HR-TB | lineage4.9 | None | ERR3797014 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR2514692 | Other | None | ERR9787197 | Other | None | ERR9786604 | Other | None | SRR3675572 | Other | None | ERR6866807 | Other | lineage4.9 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR26399973 | Other | La3;lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | ERR11049020 | Other | lineage4.8 | None | ERR4769521 | RR-TB | lineage4.9 | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR161037 | Other | lineage4.9 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR25827507 | MDR-TB | lineage4.1.1.1 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None |
|---|
