lineage | Count |
---|---|
lineage4 | 63 |
127 | |
La3 | 1 |
lineage4.9 | 37 |
lineage4.4.1.1 | 2 |
lineage4.3.3 | 2 |
lineage2.2.1 | 17 |
lineage2.2 | 7 |
lineage3.1 | 2 |
lineage2 | 3 |
lineage4.3.4.1 | 1 |
lineage4.2.1 | 2 |
lineage1.1.2 | 3 |
lineage4.5 | 1 |
La1.8.1 | 2 |
lineage2.1 | 3 |
lineage7;lineage2.2.1.2 | 1 |
lineage4.1 | 9 |
lineage4.8 | 3 |
lineage4.9;La3 | 1 |
lineage4;lineage2.2 | 1 |
lineage2.2.1;La3 | 1 |
lineage3;lineage2.2.1 | 1 |
lineage4.1.1.1 | 1 |
lineage6.3;lineage2.2.1 | 1 |
lineage4.2;La1.7 | 1 |
lineage4.9;lineage4.8.1;lineage4.1.1 | 1 |
lineage4.1.1 | 1 |
lineage4.3.4.2.1 | 3 |
lineage4.3 | 1 |
lineage4.8;La3 | 1 |
lineage4.1.2 | 4 |
lineage4.1.1.2 | 1 |
lineage4.1.2.1 | 2 |
lineage4;lineage1.1 | 1 |
lineage4.6.2.2 | 3 |
lineage4.7 | 1 |
lineage4.9;lineage2.1 | 1 |
lineage5.2 | 2 |
lineage2.2.1.1 | 1 |
lineage4.3.2.1 | 2 |
La2 | 1 |
lineage4.1.1.3 | 1 |
lineage4.1.3 | 2 |
lineage4.3.2 | 3 |
La1.2 | 1 |
lineage3 | 2 |
lineage3.1.2 | 1 |
lineage4.6.1.1 | 1 |
lineage1.1.3.1 | 1 |
lineage3.1.2.2;lineage3.1.2.1 | 1 |
lineage4.8;lineage4.1 | 1 |
spoligotype | Count |
---|---|
None | 333 |
ID | Drug resistance | Lineage | Country iso2 | SRR10809074 | Sensitive | lineage4 | None | SRR10808399 | Sensitive | lineage4 | None | SRR10808805 | Sensitive | None | SRR1167384 | Other | lineage4 | None | SRR1158918 | Sensitive | lineage4 | None | SRR1169194 | Other | None | SRR1169306 | Other | None | SRR1169249 | Other | La3 | None | SRR1172214 | HR-TB | lineage4.9 | None | SRR1172234 | Other | None | SRR1172310 | HR-TB | None | SRR1172951 | Other | None | SRR1172844 | MDR-TB | lineage4.4.1.1 | None | SRR1172728 | MDR-TB | None | SRR1172817 | HR-TB | None | SRR1172857 | MDR-TB | None | SRR1173218 | Pre-XDR-TB | lineage4.3.3 | None | SRR1173166 | Other | lineage4.9 | None | SRR1173118 | Other | None | SRR1173153 | HR-TB | None | SRR1173400 | Other | None | SRR1173363 | HR-TB | None | SRR1173384 | Other | lineage4 | None | SRR1173568 | Other | lineage4.9 | None | SRR1173562 | HR-TB | lineage4 | None | SRR1173484 | Other | lineage4 | None | SRR1173706 | Other | lineage4.9 | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173629 | Other | None | SRR1174897 | HR-TB | None | SRR1173777 | Other | lineage4 | None | SRR1173778 | Other | None | SRR1173788 | Other | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1180996 | HR-TB | lineage4 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR1181289 | Other | lineage2.2.1 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR1183049 | Other | lineage2.2 | None | SRR1184294 | HR-TB | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184372 | MDR-TB | None | SRR1184380 | HR-TB | None | SRR1184381 | MDR-TB | None | SRR1196494 | MDR-TB | None | SRR1184388 | Other | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1196768 | MDR-TB | None | SRR1196566 | HR-TB | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | SRR1196546 | HR-TB | None | SRR1196677 | HR-TB | lineage2 | None | SRR12142341 | HR-TB | None | SRR12416824 | HR-TB | None | SRR14801749 | Sensitive | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR15368973 | Other | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | SRR25827687 | MDR-TB | lineage1.1.2 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR1791747 | Other | La1.8.1 | None | SRR1710057 | Other | lineage2.1 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR19304036 | HR-TB | None | SRR19303884 | HR-TB | None | SRR8692858 | Sensitive | lineage4.9 | None | SRR20970016 | Other | lineage2.2 | None | SRR25827682 | Other | None | SRR22048420 | Sensitive | lineage4.1 | None | SRR20969677 | HR-TB | lineage2 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR20969708 | HR-TB | lineage2.2 | None | ERR11081257 | Other | lineage4.8 | None | SRR26399973 | Other | lineage4.9;La3 | None | SRR8692800 | Other | lineage4 | None | SRR8692863 | Other | lineage4;lineage2.2 | None | SRR26937071 | MDR-TB | lineage2.2.1;La3 | None | SRR25827497 | Pre-XDR-TB | lineage3;lineage2.2.1 | None | SRR25827507 | MDR-TB | lineage4.1.1.1 | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | SRR26159043 | Other | lineage4.9 | None | SRR23961559 | Other | lineage4.2;La1.7 | None | ERR4815604 | HR-TB | None | ERR779852 | Sensitive | lineage4.9;lineage4.8.1;lineage4.1.1 | None | ERR176793 | Other | lineage4.1.1 | None | SRR3675465 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | SRR3675488 | HR-TB | None | SRR3416776 | Other | lineage2.1 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | SRR3544723 | Sensitive | lineage4.1 | None | SRR3675221 | HR-TB | None | SRR3675236 | HR-TB | None | SRR3675501 | HR-TB | None | ERR4815471 | Other | lineage4.9 | None | SRR3675222 | Other | None | SRR3675311 | Other | None | ERR176643 | HR-TB | None | ERR702405 | Sensitive | lineage2.1 | None | SRR3675246 | Sensitive | lineage4 | None | ERR176568 | Other | lineage4.3 | None | ERR2027263 | Other | lineage4 | None | SRR3675312 | HR-TB | lineage4 | None | ERR176751 | HR-TB | None | ERR4816964 | Other | lineage4.9 | None | ERR2229542 | Other | lineage4.8 | None | ERR176740 | HR-TB | None | SRR3675510 | Other | None | ERR4816999 | Other | None | ERR212001 | HR-TB | None | SRR3675572 | Other | None | ERR212033 | HR-TB | None | ERR4817060 | RR-TB | None | SRR3675574 | HR-TB | None | SRR3675571 | HR-TB | None | ERR4816585 | Other | lineage2.2 | None | SRR5341384 | Sensitive | lineage4.9 | None | SRR3742665 | HR-TB | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | ERR502912 | Other | lineage2.2.1 | None | ERR4816656 | HR-TB | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR4817893 | Other | lineage4.8;La3 | None | ERR4818021 | Other | La1.8.1 | None | ERR2446566 | Other | lineage4.1 | None | ERR234659 | HR-TB | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR4818347 | Other | lineage4.1.2 | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR4818615 | Other | None | ERR4819051 | Other | lineage4 | None | ERR4818394 | Other | lineage4.9 | None | ERR4818929 | HR-TB | None | ERR4818536 | Other | lineage4.9 | None | SRR5341396 | Other | lineage4 | None | SRR5341453 | Sensitive | None | SRR5341387 | Other | lineage4 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR4819781 | Other | lineage2.2.1 | None | ERR4819322 | Other | lineage4;lineage1.1 | None | ERR4819357 | Other | lineage4.9 | None | SRR5341456 | Other | None | SRR5341425 | Other | lineage4 | None | ERR4819462 | Other | lineage4 | None | SRR5341455 | Sensitive | lineage4 | None | ERR4819809 | HR-TB | lineage4.6.2.2 | None | SRR5341300 | Other | lineage4 | None | SRR5341299 | Sensitive | lineage4 | None | SRR5341298 | Sensitive | lineage4 | None | SRR5341302 | HR-TB | None | SRR5341303 | RR-TB | lineage4 | None | ERR2514692 | Other | None | ERR4819933 | Other | lineage4.9 | None | SRR5341308 | Sensitive | lineage4 | None | SRR5341330 | HR-TB | None | ERR4819932 | Other | lineage4.7 | None | SRR5341323 | Sensitive | lineage4 | None | SRR5341310 | Other | lineage1.1.2 | None | SRR5341333 | HR-TB | None | SRR5341366 | Sensitive | lineage4 | None | SRR5341461 | Sensitive | lineage4 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341467 | Other | lineage4 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | ERR4821655 | Sensitive | lineage4 | None | SRR6045519 | HR-TB | None | SRR5341469 | Other | lineage4 | None | SRR5341470 | HR-TB | None | ERR502511 | Sensitive | lineage4.9;lineage2.1 | None | SRR6046210 | Other | lineage4 | None | SRR6045526 | HR-TB | None | SRR6045664 | Other | lineage4.2.1 | None | SRR6045555 | HR-TB | None | SRR6046133 | HR-TB | None | SRR6046141 | Other | lineage4.9 | None | SRR6045832 | HR-TB | lineage4.9 | None | SRR6045795 | HR-TB | lineage2.2.1 | None | SRR6044790 | HR-TB | None | SRR6045892 | Sensitive | None | SRR6044855 | Other | lineage4.9 | None | SRR6044835 | Sensitive | lineage4 | None | SRR6044918 | Sensitive | lineage4.9 | None | SRR6044876 | Sensitive | lineage4 | None | SRR6045002 | MDR-TB | lineage4.9 | None | SRR6045327 | HR-TB | None | SRR6045010 | Other | lineage4 | None | SRR6046066 | HR-TB | None | SRR6046305 | Other | lineage4.9 | None | SRR6046225 | HR-TB | None | SRR6046299 | HR-TB | None | SRR6046385 | Other | lineage4.9 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR3148182 | MDR-TB | lineage2.2.1 | mx | SRR6046492 | Other | None | SRR6046594 | HR-TB | lineage4 | None | ERR323037 | HR-TB | lineage4 | None | ERR4831117 | HR-TB | None | ERR2516121 | Sensitive | lineage4.1 | es | ERR4830353 | Other | None | SRR6046540 | HR-TB | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6511621 | HR-TB | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | ERR502510 | Sensitive | lineage4 | None | SRR6789624 | MDR-TB | lineage4.1 | None | SRR6789626 | Other | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | ERR4872203 | MDR-TB | lineage4.1.2 | None | SRR6982077 | MDR-TB | lineage4.3.2.1 | None | SRR7496509 | Other | None | ERR502524 | HR-TB | La2 | None | ERR502532 | HR-TB | None | SRR7535082 | Sensitive | lineage4 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR7535086 | Other | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR7585435 | Other | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | ERR323066 | Sensitive | lineage4 | None | ERR323039 | HR-TB | None | ERR323043 | HR-TB | None | ERR323053 | HR-TB | None | ERR1035122 | Sensitive | None | ERR323107 | Other | lineage4 | None | ERR067699 | HR-TB | lineage4 | None | ERR323085 | Sensitive | lineage4 | None | ERR11465024 | Other | lineage4.1.1.3 | None | ERR1035157 | Other | lineage4.9 | None | ERR1063896 | Sensitive | None | ERR1063855 | Other | lineage4 | None | ERR1063883 | Sensitive | lineage4 | None | ERR137286 | Sensitive | lineage4 | None | ERR11044945 | Sensitive | lineage4.1 | None | ERR11044946 | Sensitive | lineage4.1 | None | ERR133825 | Sensitive | lineage4 | None | ERR3283014 | HR-TB | None | ERR323115 | Sensitive | lineage4 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3283027 | HR-TB | None | ERR3283028 | Other | None | ERR3283031 | HR-TB | None | ERR3445504 | HR-TB | None | ERR3283036 | HR-TB | None | ERR3283047 | HR-TB | None | ERR3283055 | HR-TB | None | ERR3283057 | HR-TB | lineage4 | None | ERR369151 | Sensitive | lineage4.9 | None | ERR3797046 | HR-TB | None | ERR369156 | Sensitive | lineage4.9 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR3797048 | HR-TB | None | ERR3797036 | HR-TB | None | ERR3797069 | Other | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797063 | HR-TB | None | ERR4797474 | Other | None | ERR3797064 | Sensitive | None | ERR3797087 | Sensitive | lineage4 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR4195419 | Sensitive | lineage4.3.2 | None | ERR4195854 | Sensitive | lineage4.1 | None | ERR4407463 | HR-TB | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR4796929 | Sensitive | lineage4 | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4797184 | Sensitive | lineage4 | None | ERR3797079 | Sensitive | lineage4 | None | ERR4024991 | Other | None | ERR4195505 | Sensitive | lineage4.3.2 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR4769442 | HR-TB | lineage4 | None | ERR4769497 | HR-TB | La1.2 | None | ERR4796254 | Sensitive | lineage4 | None | ERR4797264 | Sensitive | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4798099 | Other | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4810741 | HR-TB | None | ERR4800341 | Other | lineage3 | None | ERR4799378 | Sensitive | lineage4 | None | ERR4811022 | HR-TB | None | ERR4811105 | HR-TB | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR4811493 | HR-TB | None | ERR5336148 | Other | None | ERR4811142 | MDR-TB | None | ERR702404 | HR-TB | None | ERR6358951 | HR-TB | lineage4 | None | ERR6358979 | Other | None | ERR6359066 | HR-TB | lineage4 | None | ERR6359069 | Other | lineage4.9 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR6866547 | Sensitive | lineage4 | None | ERR6359070 | Other | lineage4.9 | None | ERR6866022 | Other | None | ERR6866410 | Sensitive | None | ERR6866639 | Other | None | ERR702406 | HR-TB | None | ERR736865 | HR-TB | None | ERR736831 | HR-TB | lineage4.9 | None | ERR736834 | Sensitive | lineage4 | None | ERR736867 | HR-TB | None | ERR751326 | Sensitive | lineage4 | None | ERR736872 | Sensitive | lineage4 | None | ERR736874 | HR-TB | None | ERR176549 | Other | lineage4.3.4.2.1 | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9117709 | HR-TB | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | ERR9121453 | Sensitive | lineage4.3.2 | None | ERR9786525 | Other | lineage4.8;lineage4.1 | None | ERR9786671 | Other | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR987722 | HR-TB | None | ERR9121485 | Sensitive | lineage4.1 | None | ERR9786604 | Other | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9787197 | Other | None |
---|