lineage | Count |
---|---|
140 | |
lineage4.5 | 2 |
lineage1.1.2 | 2 |
lineage2.2.1 | 12 |
lineage2.2 | 10 |
lineage7;lineage2.2.1.2 | 1 |
lineage2 | 3 |
lineage4.9 | 34 |
lineage6.3;lineage2.2.1 | 1 |
lineage4.1.1.1 | 1 |
lineage4.8 | 2 |
lineage2.2.1;La3 | 1 |
lineage4.9;La3 | 1 |
lineage4 | 57 |
lineage3;lineage2.2.1 | 1 |
lineage4.1.1 | 1 |
lineage4.3.4.2.1 | 2 |
lineage4.3 | 1 |
La1.8.1 | 2 |
lineage4.8;La3 | 2 |
lineage3 | 3 |
lineage5.2 | 2 |
lineage4.6.2.2 | 3 |
lineage4.1.2.1 | 8 |
lineage4.1.2 | 2 |
lineage4.3.2.1 | 1 |
lineage4.1.1.3 | 1 |
lineage4.3.4.1 | 1 |
lineage4.1.3 | 2 |
lineage4.6.1.1 | 1 |
lineage4.3.4 | 1 |
lineage6.3.1 | 1 |
lineage2.2.1.2 | 2 |
lineage4.4.1.1 | 1 |
lineage4.3.3 | 3 |
lineage3.1 | 2 |
spoligotype | Count |
---|---|
None | 310 |
ID | Drug resistance | Lineage | Country iso2 | SRR15368973 | Other | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR25827687 | MDR-TB | lineage1.1.2 | None | SRR18003019 | Other | lineage2.2.1 | None | SRR18910194 | HR-TB | lineage2.2 | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR20969677 | HR-TB | lineage2 | None | SRR19304036 | HR-TB | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR19303884 | HR-TB | None | SRR25827682 | Other | None | SRR20970016 | Other | lineage2.2 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | SRR26159043 | Other | lineage4.9 | None | SRR25827507 | MDR-TB | lineage4.1.1.1 | None | ERR11081257 | Other | lineage4.8 | None | SRR26937071 | MDR-TB | lineage2.2.1;La3 | None | SRR26399973 | Other | lineage4.9;La3 | None | SRR3675455 | Sensitive | lineage4 | None | SRR25827497 | Pre-XDR-TB | lineage3;lineage2.2.1 | None | ERR4815604 | HR-TB | None | SRR3675473 | Sensitive | lineage4.9 | None | SRR3675477 | Other | lineage4.9 | None | ERR176779 | HR-TB | None | SRR3675472 | Sensitive | lineage4.9 | None | ERR176778 | HR-TB | None | SRR3675465 | HR-TB | None | ERR176793 | Other | lineage4.1.1 | None | ERR4814352 | HR-TB | lineage2.2.1 | None | ERR1577244 | Sensitive | lineage2.2.1 | None | SRR3675488 | HR-TB | None | SRR3675210 | Sensitive | lineage4.9 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | SRR3675222 | Other | None | SRR3675221 | HR-TB | None | SRR3675229 | Other | lineage4 | None | ERR181824 | HR-TB | lineage4 | None | SRR3675501 | HR-TB | None | SRR3675236 | HR-TB | None | SRR3675270 | HR-TB | None | SRR3675246 | Sensitive | lineage4 | None | ERR176568 | Other | lineage4.3 | None | SRR3675311 | Other | None | SRR3675279 | Other | None | ERR176643 | HR-TB | None | SRR3675514 | Sensitive | lineage4.9 | None | ERR176651 | HR-TB | None | ERR181887 | HR-TB | None | SRR3675387 | Sensitive | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR3675522 | Other | None | ERR4816999 | Other | None | ERR212001 | HR-TB | None | SRR3675548 | Sensitive | lineage4.9 | None | ERR2027263 | Other | lineage4 | None | ERR4816466 | HR-TB | None | SRR3675572 | Other | None | SRR3675577 | Sensitive | lineage4.9 | None | ERR212125 | HR-TB | lineage4 | None | SRR3675574 | HR-TB | None | ERR4816585 | Other | lineage2.2 | None | SRR3742665 | HR-TB | None | ERR502912 | Other | lineage2.2.1 | None | ERR4818021 | Other | La1.8.1 | None | ERR4817893 | Other | lineage4.8;La3 | None | SRR7496472 | Other | None | ERR234659 | HR-TB | None | ERR4818110 | Sensitive | lineage4.9 | None | SRR5341437 | Sensitive | lineage4.9 | None | SRR5341453 | Sensitive | None | SRR5007188 | Other | lineage4 | None | SRR5341456 | Other | None | ERR4819051 | Other | lineage4 | None | ERR4818615 | Other | None | ERR2514552 | Sensitive | lineage3 | None | SRR5341323 | Sensitive | lineage4 | None | SRR5341296 | Sensitive | lineage4.9 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR5341315 | Sensitive | None | SRR5341299 | Sensitive | lineage4 | None | ERR2514692 | Other | None | SRR5341302 | HR-TB | None | SRR5341313 | HR-TB | None | ERR6359082 | Other | lineage4.9 | None | SRR5341333 | HR-TB | None | SRR5341330 | HR-TB | None | SRR5341345 | Sensitive | lineage4.9 | None | SRR6045327 | HR-TB | None | SRR6046210 | Other | lineage4 | None | SRR6045526 | HR-TB | None | SRR5535933 | HR-TB | None | SRR6045519 | HR-TB | None | SRR6044780 | Other | lineage4.9 | None | SRR6045892 | Sensitive | None | SRR6044790 | HR-TB | None | SRR6044876 | Sensitive | lineage4 | None | SRR6045010 | Other | lineage4 | None | SRR6045217 | Other | lineage4 | None | SRR6046066 | HR-TB | None | SRR6045503 | HR-TB | None | ERR4821655 | Sensitive | lineage4 | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR6044855 | Other | lineage4.9 | None | SRR6046046 | Other | None | SRR6046245 | Other | lineage4.9 | None | SRR6046540 | HR-TB | None | ERR4830353 | Other | None | SRR6046305 | Other | lineage4.9 | None | ERR4872094 | MDR-TB | lineage5.2 | None | SRR6046878 | HR-TB | lineage4 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6511621 | HR-TB | None | SRR6046611 | HR-TB | lineage4.9 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR11466146 | Other | lineage4.3.4.2.1 | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | ERR502532 | HR-TB | None | ERR4831638 | Sensitive | None | SRR6789626 | Other | None | ERR502943 | HR-TB | None | ERR502908 | HR-TB | lineage2.2.1 | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR7496509 | Other | None | SRR7496517 | Other | None | SRR7535086 | Other | None | SRR7585435 | Other | lineage4.9 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | ERR323043 | HR-TB | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR9971114 | Other | lineage2.2.1 | None | ERR323045 | HR-TB | None | ERR323107 | Other | lineage4 | None | ERR1023525 | HR-TB | lineage4 | None | ERR067699 | HR-TB | lineage4 | None | ERR1035157 | Other | lineage4.9 | None | ERR1035122 | Sensitive | None | ERR11465024 | Other | lineage4.1.1.3 | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | ERR1063859 | HR-TB | None | ERR1063857 | HR-TB | None | ERR1063862 | HR-TB | None | ERR1063858 | HR-TB | None | ERR11049020 | Other | lineage4.8 | None | ERR1063883 | Sensitive | lineage4 | None | ERR1063896 | Sensitive | None | ERR3283047 | HR-TB | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3283025 | HR-TB | None | ERR3283028 | Other | None | ERR3283027 | HR-TB | None | ERR3283040 | HR-TB | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283036 | HR-TB | None | ERR3445503 | HR-TB | None | ERR3445504 | HR-TB | None | ERR3445502 | HR-TB | lineage4 | None | ERR3283057 | HR-TB | lineage4 | None | ERR349330 | Sensitive | lineage4 | None | ERR363453 | Sensitive | lineage4 | None | ERR363421 | Sensitive | lineage4 | None | ERR363426 | Sensitive | lineage4 | None | ERR363456 | Sensitive | lineage4 | None | ERR373946 | Sensitive | lineage4 | None | ERR363498 | Sensitive | lineage4 | None | ERR363502 | Sensitive | lineage4 | None | ERR363506 | Sensitive | lineage4 | None | ERR3797015 | HR-TB | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797046 | HR-TB | None | ERR3797047 | HR-TB | lineage4 | None | ERR3797069 | Other | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3797063 | HR-TB | None | ERR3797073 | HR-TB | La1.8.1 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR3797064 | Sensitive | None | ERR3797086 | Other | lineage4.9 | None | ERR400320 | Sensitive | lineage4 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR400326 | Sensitive | lineage4 | None | ERR4024991 | Other | None | ERR400336 | Sensitive | lineage4 | None | ERR400345 | Other | lineage4 | None | ERR405209 | Sensitive | lineage4 | None | ERR4407463 | HR-TB | None | ERR4188247 | HR-TB | None | ERR4769474 | HR-TB | lineage4 | None | ERR473332 | Other | lineage4 | None | ERR4769457 | Other | lineage4.9 | None | ERR4769452 | HR-TB | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4796254 | Sensitive | lineage4 | None | ERR4769521 | HR-TB | None | ERR4796929 | Sensitive | lineage4 | None | ERR4797184 | Sensitive | lineage4 | None | ERR4797264 | Sensitive | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4797474 | Other | None | ERR4797313 | HR-TB | None | ERR4797350 | Sensitive | lineage4.9 | None | ERR12015083 | Other | lineage4.8;La3 | None | ERR4798099 | Other | None | ERR4799025 | Pre-XDR-TB | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4799378 | Sensitive | lineage4 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4800341 | Other | lineage3 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR4810741 | HR-TB | None | ERR4811022 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR4811030 | Sensitive | None | ERR4811105 | HR-TB | None | ERR4811493 | HR-TB | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR4812155 | Sensitive | None | ERR5336148 | Other | None | ERR6866807 | HR-TB | lineage4 | None | ERR6358979 | Other | None | ERR6866022 | Other | None | ERR6866410 | Sensitive | None | ERR6866547 | Sensitive | lineage4 | None | ERR6866639 | Other | None | ERR736867 | HR-TB | None | ERR702404 | HR-TB | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR736848 | HR-TB | None | ERR736856 | HR-TB | lineage4 | None | ERR702406 | HR-TB | None | ERR736834 | Sensitive | lineage4 | None | ERR9117709 | HR-TB | None | ERR736874 | HR-TB | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR736875 | HR-TB | lineage4 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR9119669 | HR-TB | None | ERR9786627 | Other | lineage4.1.2.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9786515 | Other | lineage4.1.2.1 | None | ERR9786604 | Other | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786843 | Other | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786671 | Other | None | ERR9786694 | Other | lineage4.1.2.1 | None | SRR10808399 | Sensitive | lineage4 | None | ERR9787197 | Other | None | SRR1169194 | Other | None | SRR10808805 | Sensitive | None | SRR1167384 | Other | lineage4 | None | SRR10809074 | Sensitive | lineage4 | None | SRR1169306 | Other | None | SRR1172817 | HR-TB | None | SRR1172234 | Other | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR1172728 | MDR-TB | None | SRR1173118 | Other | None | SRR1172844 | MDR-TB | lineage4.4.1.1 | None | SRR1172951 | Other | None | SRR1172857 | MDR-TB | None | SRR1173153 | HR-TB | None | SRR1173166 | Other | lineage4.9 | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173218 | Pre-XDR-TB | lineage4.3.3 | None | SRR1173384 | Other | lineage4 | None | SRR1173484 | Other | lineage4 | None | SRR1173363 | HR-TB | None | SRR1173400 | Other | None | SRR1173778 | Other | None | SRR1173629 | Other | None | SRR1173706 | Other | lineage4.9 | None | SRR1173788 | Other | None | SRR1175090 | Other | lineage4.9 | None | SRR1175074 | MDR-TB | None | SRR1175496 | HR-TB | lineage4.9 | None | SRR1175127 | Sensitive | lineage2.2.1.2 | None | SRR1184294 | HR-TB | None | SRR1175500 | MDR-TB | lineage4 | None | SRR1175507 | MDR-TB | lineage4 | None | SRR1175508 | Other | lineage4.9 | None | SRR1184372 | MDR-TB | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184380 | HR-TB | None | SRR1184381 | MDR-TB | None | SRR1184388 | Other | None | SRR1196546 | HR-TB | None | SRR1196494 | MDR-TB | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1196566 | HR-TB | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | SRR1196677 | HR-TB | lineage2 | None | SRR14782405 | HR-TB | None | SRR1196768 | MDR-TB | None | SRR12142341 | HR-TB | None | SRR12416824 | HR-TB | None | SRR14801749 | Sensitive | None |
---|