EBG00000313339 - n.289A>T
Drug resistance types
30 Sensitive
6 RR-TB
67 HR-TB
20 MDR-TB
6 Pre-XDR-TB
0 XDR-TB
130 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 112 |
| lineage4.3.4.1 | 1 |
| La3;lineage4.8 | 1 |
| lineage2.1;lineage4.9 | 6 |
| La1;lineage4.1.2 | 1 |
| lineage4.9;lineage7 | 1 |
| M.canetti;lineage4.9 | 1 |
| lineage2.2.1 | 15 |
| La3 | 2 |
| lineage6.1.3 | 2 |
| lineage4.1.1.3;lineage4.9 | 2 |
| La1.2.BCG | 1 |
| lineage4.6.2.2 | 1 |
| lineage4.1.1.1 | 3 |
| lineage4.1.2.1 | 11 |
| 12 | |
| lineage4.9;lineage6.3 | 5 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| lineage4.5 | 2 |
| La3;M.canetti;lineage2.2.1 | 1 |
| lineage2.2.2 | 1 |
| lineage4.1.2 | 1 |
| lineage2.2 | 3 |
| La1.7;lineage4.9 | 1 |
| lineage4.3.4.2.1 | 2 |
| La3;lineage3 | 1 |
| lineage4.8 | 5 |
| lineage4.9;lineage9 | 2 |
| lineage3 | 3 |
| La3;lineage4.9 | 2 |
| lineage4.3.2.1 | 2 |
| La1;lineage4.9 | 2 |
| lineage1.2.2.2 | 1 |
| lineage4.3.3 | 3 |
| La2;lineage4.9 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| La1.7 | 1 |
| La3;lineage2.1;lineage4.9 | 2 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage4.1.1.3 | 2 |
| La1.7;lineage4.2 | 1 |
| lineage1.1.3.1 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 4 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| La1;lineage2;lineage4.9 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 3 |
| lineage2.1 | 2 |
| La1.2;La1.8.1 | 1 |
| lineage4.3.2;lineage4.9 | 1 |
| lineage2.2.1.2;lineage7 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| lineage4.1 | 1 |
| lineage1.1.1 | 1 |
| La3;lineage2 | 1 |
| lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| La3;lineage2.1;lineage6.3 | 1 |
| lineage4.2.1.1;lineage4.3.3 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage6.3.1 | 1 |
| lineage2.2.1;lineage4 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| lineage2.2.1.1 | 1 |
| lineage4.6.1.1 | 1 |
| lineage2.2.1;lineage6.3 | 1 |
| lineage4 | 2 |
| lineage4.9;lineage6.1.3 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage3.1 | 1 |
| lineage3.1.1 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| lineage4.4.1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 259 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR3675514 | Sensitive | lineage4.9 | None | ERR363453 | Other | lineage4.9 | None | ERR11466499 | Other | lineage4.3.4.1 | None | SRR1172234 | Other | lineage4.9 | None | ERR12015083 | Other | La3;lineage4.8 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | SRR9970978 | Other | La1;lineage4.1.2 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | SRR12416840 | MDR-TB | lineage4.9 | None | ERR970413 | MDR-TB | lineage2.2.1 | None | SRR1172817 | Other | La3 | None | ERR9787165 | Other | lineage6.1.3 | None | SRR2010299 | MDR-TB | lineage2.2.1 | None | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR1915487 | Other | La1.2.BCG | None | ERR9786645 | Other | lineage4.6.2.2 | None | SRR25827507 | MDR-TB | lineage4.1.1.1 | None | SRR6045359 | HR-TB | lineage4.9 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR1063896 | HR-TB | None | ERR9786671 | Other | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | SRR1173363 | Other | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | SRR1172857 | Other | None | ERR9787197 | Other | None | SRR28119805 | Other | lineage4.9 | None | SRR12708416 | Sensitive | None | ERR752229 | Other | lineage4.5 | None | SRR1196583 | Other | lineage4.9 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | ERR779852 | HR-TB | lineage4.9 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | ERR369151 | Other | lineage4.9 | None | ERR702405 | HR-TB | lineage4.9 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | SRR18910194 | HR-TB | lineage2.2.2 | None | SRR9970980 | HR-TB | lineage4.1.2 | None | SRR20969708 | HR-TB | lineage2.2 | None | ERR926165 | Other | lineage4.9 | None | SRR3675492 | Other | La1.7;lineage4.9 | None | ERR176549 | Other | lineage4.3.4.2.1 | None | SRR1196677 | Other | lineage2.2 | None | ERR926156 | Other | lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR926162 | Sensitive | lineage4.9 | None | SRR1172310 | MDR-TB | lineage4.9 | None | ERR387051 | RR-TB | lineage4.9 | None | ERR1023302 | MDR-TB | La3;lineage3 | None | ERR926154 | Sensitive | lineage4.9 | None | ERR4799025 | Other | lineage4.8 | None | ERR11138607 | Pre-XDR-TB | lineage2.2.1 | None | SRR15368973 | Other | lineage4.9 | None | ERR4816762 | Sensitive | lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | SRR17832802 | HR-TB | lineage3 | None | ERR349265 | Other | lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | ERR124636 | HR-TB | lineage4.9 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | ERR926160 | Other | lineage4.9 | None | SRR1173384 | Other | lineage4.9 | None | ERR4811030 | Other | lineage4.9 | None | ERR3283011 | Other | La3;lineage4.9 | None | SRR5341461 | HR-TB | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR6511621 | HR-TB | lineage4.9 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | ERR1035122 | HR-TB | lineage4.9 | None | ERR4796584 | Sensitive | lineage1.2.2.2 | None | ERR926163 | Other | lineage4.9 | None | SRR5341387 | Other | lineage4.9 | None | ERR751326 | Other | lineage4.9 | None | SRR1172951 | Other | lineage4.9 | None | ERR4799171 | Pre-XDR-TB | lineage4.8 | None | SRR1196566 | Other | lineage4.9 | None | SRR21732980 | Other | lineage4.3.3 | None | ERR323039 | MDR-TB | La2;lineage4.9 | None | SRR5341453 | Other | lineage4.9 | None | ERR363490 | Other | lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR363445 | Other | lineage4.9 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | ERR926164 | Other | lineage4.9 | None | ERR5311097 | Other | lineage4.2;lineage4.6.3;lineage4.9 | None | ERR9786694 | Other | lineage4.1.2.1 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR3797046 | HR-TB | lineage4.9 | None | SRR3675222 | Other | La1.7 | None | SRR1158918 | Other | lineage4.9 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR373947 | Other | lineage4.9 | None | ERR11465024 | Other | lineage4.1.1.3 | None | SRR23961559 | Other | La1.7;lineage4.2 | None | ERR363500 | Other | lineage4.9 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | SRR6045503 | Other | lineage4.9 | None | ERR970445 | MDR-TB | lineage2.2.1 | None | ERR9786617 | Other | lineage4.1.1.1 | None | SRR20970016 | Other | lineage2.2 | None | ERR736856 | HR-TB | lineage4.9 | None | ERR971389 | Other | lineage4.9 | None | ERR8479578 | HR-TB | lineage1.1.3.1 | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | SRR1184381 | MDR-TB | None | SRR1184372 | MDR-TB | None | SRR7535086 | Other | None | SRR28044634 | Other | lineage3 | None | ERR4407463 | HR-TB | None | SRR1196768 | MDR-TB | None | SRR29603691 | Sensitive | lineage3 | None | ERR369162 | Other | lineage4.9 | None | ERR363449 | Other | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | ERR373945 | Other | lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | SRR10808668 | Other | lineage2.2.1 | None | ERR363421 | Other | lineage4.9 | None | ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR18003019 | Other | lineage2.2.1 | None | ERR9786569 | Other | lineage4.8 | None | SRR7535082 | Other | lineage4.9 | None | SRR20969731 | Other | lineage2.2.1 | None | ERR736848 | Other | lineage4.9 | None | ERR926157 | Other | lineage4.9 | None | SRR1180226 | HR-TB | lineage4.9 | None | ERR4799547 | HR-TB | lineage2.2.1 | None | ERR067712 | Sensitive | lineage4.9 | None | ERR067699 | HR-TB | La1;lineage2;lineage4.9 | None | ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR4811311 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR12142341 | HR-TB | lineage2.1 | None | ERR373946 | Other | lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | SRR7240033 | Other | La1.2;La1.8.1 | None | SRR14801749 | HR-TB | lineage4.9 | None | SRR5341308 | HR-TB | lineage4.9 | None | ERR4811142 | RR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR400326 | Other | lineage4.9 | None | ERR502524 | MDR-TB | lineage4.9;lineage6.3 | None | ERR4814639 | HR-TB | lineage4.9 | None | ERR176793 | Other | lineage4.1.1.1 | None | ERR736865 | MDR-TB | lineage4.3.2;lineage4.9 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | SRR18549032 | HR-TB | lineage2.2.1.2;lineage7 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | ERR926159 | Sensitive | lineage4.9 | None | SRR1184294 | Other | lineage4.9 | None | ERR323107 | HR-TB | lineage4.9 | None | SRR1165699 | Other | lineage4.9 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | SRR1172728 | RR-TB | La3 | None | SRR10809074 | HR-TB | lineage4.9 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | SRR19295647 | HR-TB | lineage4.9 | None | ERR9786440 | Other | lineage4.1 | None | SRR21658550 | Other | lineage1.1.1 | None | SRR20969677 | HR-TB | La3;lineage2 | None | ERR11081258 | Other | lineage4.8 | None | ERR363447 | Other | lineage4.9 | None | ERR9787153 | Other | lineage6.1.3 | None | SRR1196546 | Other | lineage4.9 | None | SRR28119741 | Pre-XDR-TB | lineage2.2.1 | None | SRR1173777 | Sensitive | lineage4.9 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR6358991 | HR-TB | lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR736834 | HR-TB | lineage4.9 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | SRR5341299 | HR-TB | lineage4.9 | None | ERR736863 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR926155 | Other | lineage4.9 | None | ERR4815815 | Sensitive | lineage4.9 | None | ERR11466146 | Other | lineage4.3.4.2.1 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR9786682 | Other | lineage4.1.2.1 | None | SRR5341456 | Other | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | SRR1173788 | Sensitive | lineage4.9 | None | ERR363456 | Sensitive | lineage4.9 | None | ERR9786604 | Other | None | SRR28119777 | Other | lineage4.9 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None | ERR867542 | HR-TB | lineage4.2.1.1;lineage4.3.3 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | ERR502908 | HR-TB | lineage2.2.1 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR2693252 | HR-TB | lineage4.9 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | ERR400320 | Sensitive | lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | ERR11465025 | Other | lineage4.1.1.3 | None | ERR349296 | Sensitive | lineage4.9 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | SRR1169194 | Other | lineage4.9 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR702406 | Other | lineage2.1 | None | SRR1173633 | Other | lineage4.9 | None | SRR26159047 | RR-TB | lineage4.6.3;lineage4.9 | None | ERR363506 | Sensitive | lineage4.9 | None | SRR15600376 | HR-TB | lineage2.2.1.1 | None | SRR5341300 | HR-TB | lineage4.9 | None | ERR369163 | Other | lineage4.9 | None | ERR323115 | Sensitive | lineage4.9 | None | SRR1184312 | Other | lineage2.2.1 | None | ERR369161 | Sensitive | lineage4.9 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR9786627 | Other | lineage4.1.2.1 | None | SRR1173778 | Other | lineage4.9 | None | SRR16156817 | Other | lineage4.9 | None | SRR28119811 | Other | lineage2.2.1;lineage6.3 | None | ERR4798823 | HR-TB | lineage4 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | SRR8552928 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR1173118 | Other | lineage2.2.1 | None | SRR6046397 | RR-TB | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR323066 | HR-TB | lineage4.9 | None | SRR11662694 | Other | lineage4.9 | None | SRR6789621 | Other | lineage4.9 | None | ERR926158 | Sensitive | lineage4.9 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1173400 | Other | lineage4.9 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | SRR13837915 | Sensitive | lineage4.9 | None | ERR4811031 | Other | lineage4.5 | None | ERR349299 | Other | lineage4.9 | None | SRR1196474 | Other | lineage3.1.1 | None | ERR323062 | HR-TB | lineage4.9 | None | ERR3273109 | HR-TB | lineage4 | None | ERR2446566 | Other | lineage4.9 | None | ERR363498 | Other | lineage4.9 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | SRR1173153 | Other | lineage4.9 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR176751 | HR-TB | lineage4.9 | None | SRR1183111 | HR-TB | lineage4.9 | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR3675541 | Sensitive | lineage4.9 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR363502 | Other | lineage4.9 | None | SRR12708372 | Sensitive | lineage4.9 | None | ERR363509 | Sensitive | lineage4.9 | None |
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